CircRNA Information

General Information
circRNA Basic Information
CircID chr12:16367303|16367465
Strand +
CircType exon
Host Gene ENSG00000008394.11;
Algorism CIRI2;
Sequence CTCTGGGATTTGGACGACCAGGCCATGAGACAGTTACAAGTCTGTTTCCATGCATTTCCTGCCATTCTCATTTCCACTCCAGTCTCATTTACATGTAGGTTCTTCTGAATCTGCCTTTCTGGGCCTAAGATCTCCTGTGCCCTGAAAGAATCATTTTTTCAGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:16367303|16367465 hsa-miR-122-5p 0 0 1
chr12:16367303|16367465 hsa-miR-122-3p 0 0 1
chr12:16367303|16367465 hsa-miR-580-5p 0 0 1
chr12:16367303|16367465 hsa-miR-580-3p 0 0 1
chr12:16367303|16367465 hsa-miR-605-5p 0 0 1
chr12:16367303|16367465 hsa-miR-605-3p 0 0 1
chr12:16367303|16367465 hsa-miR-1207-5p 1 0 1
chr12:16367303|16367465 hsa-miR-548b-3p 0 0 1
chr12:16367303|16367465 hsa-miR-1295 0 0 1
chr12:16367303|16367465 hsa-miR-608 1 0 0
chr12:16367303|16367465 hsa-miR-1204 0 1 0
chr12:16367303|16367465 hsa-miR-4298 1 0 0
chr12:16367303|16367465 hsa-miR-3652 1 0 0
chr12:16367303|16367465 hsa-miR-3945 1 0 0
chr12:16367303|16367465 hsa-miR-4430 1 0 0
chr12:16367303|16367465 hsa-miR-4463 1 1 0
chr12:16367303|16367465 hsa-miR-4651 1 0 0
chr12:16367303|16367465 hsa-miR-5093 1 1 0
chr12:16367303|16367465 hsa-miR-5186 0 1 0
chr12:16367303|16367465 hsa-miR-6088 1 0 0
chr12:16367303|16367465 hsa-miR-8052 1 1 0
chr12:16367303|16367465 hsa-miR-12115 1 1 0
chr12:16367303|16367465 hsa-miR-4433b-3p 1 0 0
chr12:16367303|16367465 hsa-miR-504-3p 1 0 0
chr12:16367303|16367465 hsa-miR-4433a-3p 1 0 0
chr12:16367303|16367465 hsa-miR-6765-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6894-5p 1 0 0
chr12:16367303|16367465 hsa-miR-1236-5p 1 0 0
chr12:16367303|16367465 hsa-miR-4768-3p 0 1 0
chr12:16367303|16367465 hsa-miR-6089 1 0 0
chr12:16367303|16367465 hsa-miR-4722-5p 1 0 0
chr12:16367303|16367465 hsa-miR-3605-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6716-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6768-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6760-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6782-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6888-5p 1 1 0
chr12:16367303|16367465 hsa-miR-1226-5p 1 0 0
chr12:16367303|16367465 hsa-miR-7161-3p 0 1 0
chr12:16367303|16367465 hsa-miR-873-3p 1 0 0
chr12:16367303|16367465 hsa-miR-4727-3p 1 0 0
chr12:16367303|16367465 hsa-miR-4524a-3p 0 1 0
chr12:16367303|16367465 hsa-miR-4763-3p 1 0 0
chr12:16367303|16367465 hsa-miR-6778-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6812-5p 1 1 0
chr12:16367303|16367465 hsa-miR-6775-5p 1 1 0
chr12:16367303|16367465 hsa-miR-6743-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6819-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6797-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6879-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6735-5p 0 1 0
chr12:16367303|16367465 hsa-miR-4436b-3p 1 0 0
chr12:16367303|16367465 hsa-miR-1910-3p 0 1 0
chr12:16367303|16367465 hsa-miR-6511a-5p 0 1 0
chr12:16367303|16367465 hsa-miR-3198 1 0 0
chr12:16367303|16367465 hsa-miR-6849-5p 1 0 0
chr12:16367303|16367465 hsa-miR-6529-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:16367303|16367465
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MDDQAMRQLQVCFHAFPAILISTPVSFTCRFF
Nucleotide Sequence TTGGACGACCAGGCCATGAGACAGTTACAAGTCTGTTTCCATGCATTTCCTGCCATTCTCATTTCCACTCCAGTCTCATTTACATGTAGGTTCTTCTGA
CircID chr12:16367303|16367465
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MHFLPFSFPLQSHLHVGSSESAFLGLRSPVP
Nucleotide Sequence ATGCATTTCCTGCCATTCTCATTTCCACTCCAGTCTCATTTACATGTAGGTTCTTCTGAATCTGCCTTTCTGGGCCTAAGATCTCCTGTGCCCTGA
CircID chr12:16367303|16367465
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence LGFGRPGHETVTSLFPCISCHSHFHSSLIYM
Nucleotide Sequence CTGGGATTTGGACGACCAGGCCATGAGACAGTTACAAGTCTGTTTCCATGCATTTCCTGCCATTCTCATTTCCACTCCAGTCTCATTTACATGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab