CircRNA Information

General Information
circRNA Basic Information
CircID chr12:1646939|1647173
Strand +
CircType exon
Host Gene ENSG00000111186.11;
Algorism CIRI2;
Sequence CTGGGGCAGAGATGATGAGCACGCCGGGCCCGCCAGCCTGACCCGTTGCAGCGTCCTGTGGTTTGTGAGGCCTCCCTCGGTGGAGGAGTGACAGCAGCAGCTCAAGCTTCCCCTCCCCGGGGGTGGGGGAAGACAGTATAACGTCCACGCAGCCTGGTCATGCACCCTGGCTTCTGCAGCCCAGGCGCAAACATTCAGTTTAGGGCTTTCCTGACATGTCAGGTCAAATGGCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:1646939|1647173 hsa-miR-192-5p 0 0 1
chr12:1646939|1647173 hsa-miR-192-3p 0 0 1
chr12:1646939|1647173 hsa-miR-215-5p 0 0 1
chr12:1646939|1647173 hsa-miR-215-3p 0 0 1
chr12:1646939|1647173 hsa-miR-484 1 0 1
chr12:1646939|1647173 hsa-miR-558 0 0 1
chr12:1646939|1647173 hsa-miR-604 0 0 1
chr12:1646939|1647173 hsa-miR-626 0 0 1
chr12:1646939|1647173 hsa-miR-631 0 0 1
chr12:1646939|1647173 hsa-miR-661 0 0 1
chr12:1646939|1647173 hsa-miR-668-5p 0 0 1
chr12:1646939|1647173 hsa-miR-668-3p 0 0 1
chr12:1646939|1647173 hsa-miR-298 0 0 1
chr12:1646939|1647173 hsa-miR-891a-5p 0 0 1
chr12:1646939|1647173 hsa-miR-891a-3p 0 0 1
chr12:1646939|1647173 hsa-miR-873-5p 0 0 1
chr12:1646939|1647173 hsa-miR-873-3p 0 0 1
chr12:1646939|1647173 hsa-miR-548g-5p 0 0 1
chr12:1646939|1647173 hsa-miR-548g-3p 0 0 1
chr12:1646939|1647173 hsa-miR-1321 0 0 1
chr12:1646939|1647173 hsa-miR-361-3p 0 0 1
chr12:1646939|1647173 hsa-miR-140-3p 0 0 1
chr12:1646939|1647173 hsa-miR-324-3p 0 0 1
chr12:1646939|1647173 hsa-miR-483-3p 0 0 1
chr12:1646939|1647173 hsa-miR-663 0 0 1
chr12:1646939|1647173 hsa-miR-762 1 0 0
chr12:1646939|1647173 hsa-miR-1538 1 0 0
chr12:1646939|1647173 hsa-miR-2861 1 0 0
chr12:1646939|1647173 hsa-miR-3181 1 0 0
chr12:1646939|1647173 hsa-miR-3911 1 0 0
chr12:1646939|1647173 hsa-miR-4492 1 0 0
chr12:1646939|1647173 hsa-miR-4498 1 0 0
chr12:1646939|1647173 hsa-miR-4523 1 0 0
chr12:1646939|1647173 hsa-miR-3978 1 0 0
chr12:1646939|1647173 hsa-miR-4706 1 0 0
chr12:1646939|1647173 hsa-miR-4730 1 0 0
chr12:1646939|1647173 hsa-miR-7974 1 0 0
chr12:1646939|1647173 hsa-miR-12116 1 0 0
chr12:1646939|1647173 hsa-miR-4747-3p 1 0 0
chr12:1646939|1647173 hsa-miR-323a-5p 1 0 0
chr12:1646939|1647173 hsa-miR-671-5p 1 0 0
chr12:1646939|1647173 hsa-miR-125b-1-3p 1 0 0
chr12:1646939|1647173 hsa-miR-6089 1 0 0
chr12:1646939|1647173 hsa-miR-6820-5p 1 0 0
chr12:1646939|1647173 hsa-miR-4655-5p 1 0 0
chr12:1646939|1647173 hsa-miR-6849-3p 1 0 0
chr12:1646939|1647173 hsa-miR-6829-5p 1 0 0
chr12:1646939|1647173 hsa-miR-6821-5p 1 0 0
chr12:1646939|1647173 hsa-miR-3944-3p 1 0 0
chr12:1646939|1647173 hsa-miR-1908-5p 1 0 0
chr12:1646939|1647173 hsa-miR-1228-5p 1 0 0
chr12:1646939|1647173 hsa-miR-887-3p 1 0 0
chr12:1646939|1647173 hsa-miR-941 1 0 0
chr12:1646939|1647173 hsa-miR-4638-5p 1 0 0
chr12:1646939|1647173 hsa-miR-6756-5p 1 0 0
chr12:1646939|1647173 hsa-miR-3620-5p 1 0 0
chr12:1646939|1647173 hsa-miR-10392-5p 1 0 0
chr12:1646939|1647173 hsa-miR-10396b-5p 1 0 0
chr12:1646939|1647173 hsa-miR-4726-5p 1 0 0
chr12:1646939|1647173 hsa-miR-4745-3p 1 0 0
chr12:1646939|1647173 hsa-miR-939-5p 1 0 0
chr12:1646939|1647173 hsa-miR-6724-5p 1 0 0
chr12:1646939|1647173 hsa-miR-3085-3p 1 0 0
chr12:1646939|1647173 hsa-miR-6797-3p 1 0 0
chr12:1646939|1647173 hsa-miR-6766-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:1646939|1647173
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MQRPVVCEASLGGGVTAAAQASPPRGWGKTV
Nucleotide Sequence TTGCAGCGTCCTGTGGTTTGTGAGGCCTCCCTCGGTGGAGGAGTGACAGCAGCAGCTCAAGCTTCCCCTCCCCGGGGGTGGGGGAAGACAGTATAA
CircID chr12:1646939|1647173
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MVMHPGFCSPGANIQFRAFLTCQVKWP
Nucleotide Sequence CTGGTCATGCACCCTGGCTTCTGCAGCCCAGGCGCAAACATTCAGTTTAGGGCTTTCCTGACATGTCAGGTCAAATGGCCC
CircID chr12:1646939|1647173
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MSSPTPGEGKLELLLSLLHRGRPHKPQDAATGQAGGPGVLIISAP
Nucleotide Sequence CTGTCTTCCCCCACCCCCGGGGAGGGGAAGCTTGAGCTGCTGCTGTCACTCCTCCACCGAGGGAGGCCTCACAAACCACAGGACGCTGCAACGGGTCAGGCTGGCGGGCCCGGCGTGCTCATCATCTCTGCCCCA
CircID chr12:1646939|1647173
ORF Type ORF4
Protein Length 74
Nucleotide Length 222
Protein Sequence MTCQESPKLNVCAWAAEARVHDQAAWTLYCLPPPPGRGSLSCCCHSSTEGGLTNHRTLQRVRLAGPACSSSLPQ
Nucleotide Sequence CTGACATGTCAGGAAAGCCCTAAACTGAATGTTTGCGCCTGGGCTGCAGAAGCCAGGGTGCATGACCAGGCTGCGTGGACGTTATACTGTCTTCCCCCACCCCCGGGGAGGGGAAGCTTGAGCTGCTGCTGTCACTCCTCCACCGAGGGAGGCCTCACAAACCACAGGACGCTGCAACGGGTCAGGCTGGCGGGCCCGGCGTGCTCATCATCTCTGCCCCAG
CircID chr12:1646939|1647173
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MFAPGLQKPGCMTRLRGRYTVFPHPRGGEA
Nucleotide Sequence ATGTTTGCGCCTGGGCTGCAGAAGCCAGGGTGCATGACCAGGCTGCGTGGACGTTATACTGTCTTCCCCCACCCCCGGGGAGGGGAAGCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab