CircRNA Information

General Information
circRNA Basic Information
CircID chr12:1787952|1788140
Strand -
CircType exon
Host Gene ENSG00000006831.9;
Algorism CIRI2;
Sequence AGAATAAAGAACAGTATTAATCCCTTTGAGAAAGCATAGTCCAGCAGGACAGTGGCCATTTGGACAGAAGCCCACTTAGTTTCTTGGGAGCAACAGCACGTATCAGAAGCCAGACTTGCTCTTCGGTCATGCACTTTGGGATACAGCGTATAGGTGCAGCCCTGTCACAACACCAACAGAAGTAGCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:1787952|1788140 hsa-miR-17-5p 0 0 1
chr12:1787952|1788140 hsa-miR-17-3p 0 0 1
chr12:1787952|1788140 hsa-miR-20a-5p 0 0 1
chr12:1787952|1788140 hsa-miR-20a-3p 0 0 1
chr12:1787952|1788140 hsa-miR-93-5p 0 0 1
chr12:1787952|1788140 hsa-miR-93-3p 0 0 1
chr12:1787952|1788140 hsa-miR-106a-5p 0 0 1
chr12:1787952|1788140 hsa-miR-106a-3p 0 0 1
chr12:1787952|1788140 hsa-miR-200b-5p 0 0 1
chr12:1787952|1788140 hsa-miR-200b-3p 0 0 1
chr12:1787952|1788140 hsa-miR-149-5p 0 0 1
chr12:1787952|1788140 hsa-miR-149-3p 0 0 1
chr12:1787952|1788140 hsa-miR-150-5p 0 0 1
chr12:1787952|1788140 hsa-miR-150-3p 0 0 1
chr12:1787952|1788140 hsa-miR-200c-5p 0 0 1
chr12:1787952|1788140 hsa-miR-200c-3p 0 0 1
chr12:1787952|1788140 hsa-miR-106b-5p 0 0 1
chr12:1787952|1788140 hsa-miR-106b-3p 0 0 1
chr12:1787952|1788140 hsa-miR-370-5p 0 0 1
chr12:1787952|1788140 hsa-miR-370-3p 0 0 1
chr12:1787952|1788140 hsa-miR-422a 0 0 1
chr12:1787952|1788140 hsa-miR-20b-5p 0 0 1
chr12:1787952|1788140 hsa-miR-20b-3p 0 0 1
chr12:1787952|1788140 hsa-miR-429 0 0 1
chr12:1787952|1788140 hsa-miR-452-5p 0 0 1
chr12:1787952|1788140 hsa-miR-452-3p 0 0 1
chr12:1787952|1788140 hsa-miR-519d-5p 0 0 1
chr12:1787952|1788140 hsa-miR-519d-3p 0 0 1
chr12:1787952|1788140 hsa-miR-520g-5p 0 0 1
chr12:1787952|1788140 hsa-miR-520g-3p 0 0 1
chr12:1787952|1788140 hsa-miR-520h 0 1 1
chr12:1787952|1788140 hsa-miR-588 0 0 1
chr12:1787952|1788140 hsa-miR-655-5p 0 0 1
chr12:1787952|1788140 hsa-miR-655-3p 0 0 1
chr12:1787952|1788140 hsa-miR-758-5p 0 0 1
chr12:1787952|1788140 hsa-miR-758-3p 0 0 1
chr12:1787952|1788140 hsa-miR-1287-5p 0 0 1
chr12:1787952|1788140 hsa-miR-1287-3p 0 0 1
chr12:1787952|1788140 hsa-miR-1267 0 0 1
chr12:1787952|1788140 hsa-miR-513c-5p 0 0 1
chr12:1787952|1788140 hsa-miR-513c-3p 0 0 1
chr12:1787952|1788140 hsa-miR-519b-3p 0 1 1
chr12:1787952|1788140 hsa-miR-519c-3p 0 1 1
chr12:1787952|1788140 hsa-miR-542-3p 0 0 1
chr12:1787952|1788140 hsa-miR-371-5p 0 0 1
chr12:1787952|1788140 hsa-miR-378 0 0 1
chr12:1787952|1788140 hsa-miR-519a 0 0 1
chr12:1787952|1788140 hsa-miR-4498 1 0 0
chr12:1787952|1788140 hsa-miR-6076 0 1 0
chr12:1787952|1788140 hsa-miR-8086 1 0 0
chr12:1787952|1788140 hsa-miR-3677-5p 0 1 0
chr12:1787952|1788140 hsa-miR-152-3p 0 1 0
chr12:1787952|1788140 hsa-miR-4733-5p 0 1 0
chr12:1787952|1788140 hsa-miR-4999-5p 0 1 0
chr12:1787952|1788140 hsa-miR-4762-3p 0 1 0
chr12:1787952|1788140 hsa-miR-3074-5p 0 1 0
chr12:1787952|1788140 hsa-miR-5007-5p 1 0 0
chr12:1787952|1788140 hsa-miR-4763-3p 1 0 0
chr12:1787952|1788140 hsa-miR-3620-5p 1 0 0
chr12:1787952|1788140 hsa-miR-4758-5p 1 0 0
chr12:1787952|1788140 hsa-miR-6504-5p 1 0 0
chr12:1787952|1788140 hsa-miR-519a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:1787952|1788140
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MDRSPLSFLGATARIRSQTCSSVMHFGIQRIGAALSQHQQK
Nucleotide Sequence TTGGACAGAAGCCCACTTAGTTTCTTGGGAGCAACAGCACGTATCAGAAGCCAGACTTGCTCTTCGGTCATGCACTTTGGGATACAGCGTATAGGTGCAGCCCTGTCACAACACCAACAGAAGTAG
CircID chr12:1787952|1788140
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MYPKVHDRRASLASDTCCCSQETKWASVQMATVLLDYAFSKGLILFFI
Nucleotide Sequence CTGTATCCCAAAGTGCATGACCGAAGAGCAAGTCTGGCTTCTGATACGTGCTGTTGCTCCCAAGAAACTAAGTGGGCTTCTGTCCAAATGGCCACTGTCCTGCTGGACTATGCTTTCTCAAAGGGATTAATACTGTTCTTTATT
CircID chr12:1787952|1788140
ORF Type ORF3
Protein Length 37
Nucleotide Length 114
Protein Sequence MTEEQVWLLIRAVAPKKLSGLLSKWPLSCWTMLSQRD
Nucleotide Sequence ATGACCGAAGAGCAAGTCTGGCTTCTGATACGTGCTGTTGCTCCCAAGAAACTAAGTGGGCTTCTGTCCAAATGGCCACTGTCCTGCTGGACTATGCTTTCTCAAAGGGATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab