CircRNA Information

General Information
circRNA Basic Information
CircID chr12:2803612|2803820
Strand +
CircType exon
Host Gene ENSG00000004478.7;
Algorism CIRI2;
Sequence AGGGGAAATACCAGAACAGGGAACAGGGGGTGGTCACCATGACACCAGAAGACATCATCAGCCACACCGTCGGGGGTGAGGAAGGGAACAGAGAGAAGAAATGGCATAGCAGTGGTTTTTCCCATGTCCCTAGCACCCACATGGAGGCCACATTTGGAAATGGACTGGGAGAGGGAAAGGATGAGGAAAACGGCTGCCCAGGAGTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:2803612|2803820 hsa-miR-204-5p 0 0 1
chr12:2803612|2803820 hsa-miR-204-3p 0 0 1
chr12:2803612|2803820 hsa-miR-211-5p 0 0 1
chr12:2803612|2803820 hsa-miR-211-3p 0 0 1
chr12:2803612|2803820 hsa-miR-150-5p 0 0 1
chr12:2803612|2803820 hsa-miR-150-3p 0 0 1
chr12:2803612|2803820 hsa-miR-612 0 1 1
chr12:2803612|2803820 hsa-miR-623 0 0 1
chr12:2803612|2803820 hsa-miR-942-5p 0 0 1
chr12:2803612|2803820 hsa-miR-942-3p 0 0 1
chr12:2803612|2803820 hsa-miR-1238-5p 0 0 1
chr12:2803612|2803820 hsa-miR-1238-3p 0 0 1
chr12:2803612|2803820 hsa-miR-663b 0 0 1
chr12:2803612|2803820 hsa-miR-532-3p 0 0 1
chr12:2803612|2803820 hsa-miR-299-3p 0 0 1
chr12:2803612|2803820 hsa-miR-339-5p 0 0 1
chr12:2803612|2803820 hsa-miR-501-5p 0 0 1
chr12:2803612|2803820 hsa-miR-455-3p 0 0 1
chr12:2803612|2803820 hsa-miR-548d-3p 0 0 1
chr12:2803612|2803820 hsa-miR-1274a 0 0 1
chr12:2803612|2803820 hsa-miR-642 0 0 1
chr12:2803612|2803820 hsa-miR-1274b 0 0 1
chr12:2803612|2803820 hsa-miR-644 0 0 1
chr12:2803612|2803820 hsa-miR-1285 0 0 1
chr12:2803612|2803820 hsa-miR-3148 0 1 0
chr12:2803612|2803820 hsa-miR-4312 1 0 0
chr12:2803612|2803820 hsa-miR-4313 1 0 0
chr12:2803612|2803820 hsa-miR-4502 0 1 0
chr12:2803612|2803820 hsa-miR-8075 0 1 0
chr12:2803612|2803820 hsa-miR-8089 0 1 0
chr12:2803612|2803820 hsa-miR-93-3p 1 0 0
chr12:2803612|2803820 hsa-miR-6892-3p 0 1 0
chr12:2803612|2803820 hsa-miR-769-5p 1 0 0
chr12:2803612|2803820 hsa-miR-6741-5p 0 1 0
chr12:2803612|2803820 hsa-miR-4474-3p 0 1 0
chr12:2803612|2803820 hsa-miR-6873-3p 0 1 0
chr12:2803612|2803820 hsa-miR-4728-3p 1 0 0
chr12:2803612|2803820 hsa-miR-7845-5p 0 1 0
chr12:2803612|2803820 hsa-miR-7108-5p 0 1 0
chr12:2803612|2803820 hsa-miR-6748-5p 0 1 0
chr12:2803612|2803820 hsa-miR-7855-5p 1 0 0
chr12:2803612|2803820 hsa-miR-939-3p 0 1 0
chr12:2803612|2803820 hsa-miR-3667-3p 0 1 0
chr12:2803612|2803820 hsa-miR-642b-5p 0 1 0
chr12:2803612|2803820 hsa-miR-4787-5p 1 0 0
chr12:2803612|2803820 hsa-miR-1266-3p 0 1 0
chr12:2803612|2803820 hsa-miR-6739-3p 0 1 0
chr12:2803612|2803820 hsa-miR-146b-3p 1 0 0
chr12:2803612|2803820 hsa-miR-4640-3p 1 1 0
chr12:2803612|2803820 hsa-miR-5584-5p 0 1 0
chr12:2803612|2803820 hsa-miR-6870-3p 0 1 0
chr12:2803612|2803820 hsa-miR-4707-5p 1 0 0
chr12:2803612|2803820 hsa-miR-3619-3p 1 0 0
chr12:2803612|2803820 hsa-miR-670-3p 0 1 0
chr12:2803612|2803820 hsa-miR-3605-3p 1 0 0
chr12:2803612|2803820 hsa-miR-6865-3p 0 1 0
chr12:2803612|2803820 hsa-miR-6826-3p 1 0 0
chr12:2803612|2803820 hsa-miR-6795-3p 1 0 0
chr12:2803612|2803820 hsa-miR-3124-3p 0 1 0
chr12:2803612|2803820 hsa-miR-1255b-2-3p 1 0 0
chr12:2803612|2803820 hsa-miR-6780b-3p 1 0 0
chr12:2803612|2803820 hsa-miR-642a-5p 0 1 0
chr12:2803612|2803820 hsa-miR-6808-3p 1 0 0
chr12:2803612|2803820 hsa-miR-892c-3p 1 0 0
chr12:2803612|2803820 hsa-miR-3187-5p 0 1 0
chr12:2803612|2803820 hsa-miR-6784-3p 1 0 0
chr12:2803612|2803820 hsa-miR-6805-3p 1 0 0
chr12:2803612|2803820 hsa-miR-6810-3p 1 0 0
chr12:2803612|2803820 hsa-miR-3059-5p 1 0 0
chr12:2803612|2803820 hsa-miR-6529-3p 0 1 0
chr12:2803612|2803820 hsa-miR-6819-3p 1 0 0
chr12:2803612|2803820 hsa-miR-6891-3p 0 1 0
chr12:2803612|2803820 hsa-miR-4701-5p 1 0 0
chr12:2803612|2803820 hsa-miR-6783-3p 0 1 0
chr12:2803612|2803820 hsa-miR-4768-5p 0 1 0
chr12:2803612|2803820 hsa-miR-5006-3p 0 1 0
chr12:2803612|2803820 hsa-miR-6833-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:2803612|2803820
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MSLAPTWRPHLEMDWERERMRKTAAQES
Nucleotide Sequence ATGTCCCTAGCACCCACATGGAGGCCACATTTGGAAATGGACTGGGAGAGGGAAAGGATGAGGAAAACGGCTGCCCAGGAGTCT
CircID chr12:2803612|2803820
ORF Type ORF2
Protein Length 57
Nucleotide Length 171
Protein Sequence MTPEDIISHTVGGEEGNREKKWHSSGFSHVPSTHMEATFGNGLGEGKDEENGCPGVS
Nucleotide Sequence ATGACACCAGAAGACATCATCAGCCACACCGTCGGGGGTGAGGAAGGGAACAGAGAGAAGAAATGGCATAGCAGTGGTTTTTCCCATGTCCCTAGCACCCACATGGAGGCCACATTTGGAAATGGACTGGGAGAGGGAAAGGATGAGGAAAACGGCTGCCCAGGAGTCTCC
CircID chr12:2803612|2803820
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MGKTTAMPFLLSVPFLTPDGVADDVFWCHGDHPLFPVLVFP
Nucleotide Sequence ATGGGAAAAACCACTGCTATGCCATTTCTTCTCTCTGTTCCCTTCCTCACCCCCGACGGTGTGGCTGATGATGTCTTCTGGTGTCATGGTGACCACCCCCTGTTCCCTGTTCTGGTATTTCCC
CircID chr12:2803612|2803820
ORF Type ORF4
Protein Length 47
Nucleotide Length 141
Protein Sequence MWVLGTWEKPLLCHFFSLFPSSPPTVWLMMSSGVMVTTPCSLFWYFP
Nucleotide Sequence ATGTGGGTGCTAGGGACATGGGAAAAACCACTGCTATGCCATTTCTTCTCTCTGTTCCCTTCCTCACCCCCGACGGTGTGGCTGATGATGTCTTCTGGTGTCATGGTGACCACCCCCTGTTCCCTGTTCTGGTATTTCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab