CircNet

General Information

circRNA Basic Information

CircID	chr12:28255581\|28452654
Strand	+
CircType	exon
Host Gene	ENSG00000123106.10;
Algorism	find_circ;CIRI2;DCC;
Sequence	GTGCTATACGTGGATGACCTGCTTAGTTTTAATTTTTGGAGAAATACATTTTATAAAACATTTTCATCAGATTGCTAAAATTGTGCCACTTGAAGAATGGATGATGATGATTTTGGTGGTTTTGAGGCTGCGGAGACTTTTGATGGTGGAAGTGGTGAAACCCAAACAACATCTCCTGCTATTCCTTGGGCTGCCTTTCCTGCAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr12:28255581\|28452654	hsa-miR-197-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr12:28255581\|28452654
ORF Type	ORF1
Protein Length	64
Nucleotide Length	192
Protein Sequence	MTCLVLIFGEIHFIKHFHQIAKIVPLEEWMMMILVVLRLRRLLMVEVVKPKQHLLLFLGLPFLQ
Nucleotide Sequence	ATGACCTGCTTAGTTTTAATTTTTGGAGAAATACATTTTATAAAACATTTTCATCAGATTGCTAAAATTGTGCCACTTGAAGAATGGATGATGATGATTTTGGTGGTTTTGAGGCTGCGGAGACTTTTGATGGTGGAAGTGGTGAAACCCAAACAACATCTCCTGCTATTCCTTGGGCTGCCTTTCCTGCAG

CircID	chr12:28255581\|28452654
ORF Type	ORF2
Protein Length	48
Nucleotide Length	144
Protein Sequence	MLFGFHHFHHQKSPQPQNHQNHHHPFFKWHNFSNLMKMFYKMYFSKN*
Nucleotide Sequence	ATGTTGTTTGGGTTTCACCACTTCCACCATCAAAAGTCTCCGCAGCCTCAAAACCACCAAAATCATCATCATCCATTCTTCAAGTGGCACAATTTTAGCAATCTGATGAAAATGTTTTATAAAATGTATTTCTCCAAAAATTAA

CircID	chr12:28255581\|28452654
ORF Type	ORF3
Protein Length	36
Nucleotide Length	108
Protein Sequence	MDDDDFGGFEAAETFDGGSGETQTTSPAIPWAAFPA
Nucleotide Sequence	ATGGATGATGATGATTTTGGTGGTTTTGAGGCTGCGGAGACTTTTGATGGTGGAAGTGGTGAAACCCAAACAACATCTCCTGCTATTCCTTGGGCTGCCTTTCCTGCA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr12:28255581\|28452654	U2AF2	12	11	1
chr12:28255581\|28452654	MOV10	0	0	2
chr12:28255581\|28452654	FUS	3	1	0
chr12:28255581\|28452654	ELAVL1	12	7	0
chr12:28255581\|28452654	NOP58	2	2	1
chr12:28255581\|28452654	NOP56	2	0	0
chr12:28255581\|28452654	DDX54	0	0	1
chr12:28255581\|28452654	HNRNPL	0	3	0
chr12:28255581\|28452654	PTBP1	2	0	0
chr12:28255581\|28452654	HNRNPC	15	0	0
chr12:28255581\|28452654	HNRNPA1	1	0	0
chr12:28255581\|28452654	LIN28B	0	0	2
chr12:28255581\|28452654	IGF2BP1	0	0	1
chr12:28255581\|28452654	IGF2BP3	0	0	1
chr12:28255581\|28452654	IGF2BP2	2	1	1
chr12:28255581\|28452654	TARDBP	2	0	0
chr12:28255581\|28452654	RBM47	0	1	0
chr12:28255581\|28452654	CSTF2T	2	0	0
chr12:28255581\|28452654	CSTF2	4	0	0
chr12:28255581\|28452654	WDR33	1	0	0
chr12:28255581\|28452654	EWSR1	2	0	0
chr12:28255581\|28452654	EIF4A3	3	1	3
chr12:28255581\|28452654	FBL	1	0	0

CircRNA Information