CircNet

General Information

circRNA Basic Information

CircID	chr12:28450161\|28452654
Strand	+
CircType	exon
Host Gene	ENSG00000123106.10;
Algorism	CIRI2;find_circ;DCC;
Sequence	CATCAGAGGCTCCTTGAAATGCTAGATACAGAGAAGGAACTGTTAAAAGAAAAAATAAAGGAAGCTTTGATTCAGCAATCTCAAGAACAGAAGGAAATATTGGAAAAGTGTTTGGAGGAAGAAAGGCAAAGAAATAAAGAGGCATTAGTATCCGCTGCAAAGGTATTTCCATCTGTAATAGTGGGTTGCTTGTAACTTGAAAAAGAAGCAGTGAAGGATGCAGTTTTAAAAGTCGTAGAAGAAGAAAGAAAAAATTTAGAAAAAGCGCATGCTGAAGAAAGGGAATTATGGAAGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAAATTCAAAAAGCTATACAAGAACAAAGAAAAATAAGTCAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr12:28450161\|28452654	hsa-miR-217-5p	0	1	1
chr12:28450161\|28452654	hsa-miR-217-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr12:28450161\|28452654
ORF Type	ORF1
Protein Length	59
Nucleotide Length	177
Protein Sequence	MLDTEKELLKEKIKEALIQQSQEQKEILEKCLEEERQRNKEALVSAAKVFPSVIVGCL*
Nucleotide Sequence	ATGCTAGATACAGAGAAGGAACTGTTAAAAGAAAAAATAAAGGAAGCTTTGATTCAGCAATCTCAAGAACAGAAGGAAATATTGGAAAAGTGTTTGGAGGAAGAAAGGCAAAGAAATAAAGAGGCATTAGTATCCGCTGCAAAGGTATTTCCATCTGTAATAGTGGGTTGCTTGTAA

CircID	chr12:28450161\|28452654
ORF Type	ORF2
Protein Length	57
Nucleotide Length	171
Protein Sequence	MEIPLQRILMPLYFFAFLPPNTFPIFPSVLEIAESKLPLFFLLTVPSLYLAFQGASD
Nucleotide Sequence	ATGGAAATACCTTTGCAGCGGATACTAATGCCTCTTTATTTCTTTGCCTTTCTTCCTCCAAACACTTTTCCAATATTTCCTTCTGTTCTTGAGATTGCTGAATCAAAGCTTCCTTTATTTTTTCTTTTAACAGTTCCTTCTCTGTATCTAGCATTTCAAGGAGCCTCTGAT

CircID	chr12:28450161\|28452654
ORF Type	ORF3
Protein Length	33
Nucleotide Length	99
Protein Sequence	MLKKGNYGRQNMQKIKKKYLRKFKKLYKNKEK*
Nucleotide Sequence	ATGCTGAAGAAAGGGAATTATGGAAGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAAATTCAAAAAGCTATACAAGAACAAAGAAAAATAA

CircID	chr12:28450161\|28452654
ORF Type	ORF4
Protein Length	54
Nucleotide Length	162
Protein Sequence	VKDAVLKVVEEERKNLEKAHAEERELWKTEHAKDQEKVSQEIQKAIQEQRKISQ
Nucleotide Sequence	GTGAAGGATGCAGTTTTAAAAGTCGTAGAAGAAGAAAGAAAAAATTTAGAAAAAGCGCATGCTGAAGAAAGGGAATTATGGAAGACAGAACATGCAAAAGATCAAGAAAAAGTATCTCAGGAAATTCAAAAAGCTATACAAGAACAAAGAAAAATAAGTCAG

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr12:28450161\|28452654	IGF2BP2	1	1	5
chr12:28450161\|28452654	NOP58	1	2	3
chr12:28450161\|28452654	RBM47	1	1	0
chr12:28450161\|28452654	MSI2	0	0	1
chr12:28450161\|28452654	HNRNPC	1	0	0
chr12:28450161\|28452654	NOP56	4	0	2
chr12:28450161\|28452654	CSTF2T	0	0	1
chr12:28450161\|28452654	DDX54	0	0	8
chr12:28450161\|28452654	FUS	0	1	0
chr12:28450161\|28452654	RBM10	1	0	0
chr12:28450161\|28452654	HNRNPL	0	3	0
chr12:28450161\|28452654	AGO2	0	0	1
chr12:28450161\|28452654	IGF2BP1	1	0	0
chr12:28450161\|28452654	U2AF2	5	11	0
chr12:28450161\|28452654	FBL	0	0	3
chr12:28450161\|28452654	TRA2A	0	0	1
chr12:28450161\|28452654	EIF4A3	1	1	7
chr12:28450161\|28452654	ELAVL1	5	7	1

CircRNA Information