CircRNA Information

General Information
circRNA Basic Information
CircID chr12:29270445|29270614
Strand +
CircType exon
Host Gene ENSG00000064763.9;
Algorism CIRI2;
Sequence CCTCTGCTGCAGTGTCTGGCCAGCCTTGGGCCTCACAAGGATGTAAATGACTTTCAGGTCTGGGCTGGTGCGAAACAGCTTCTCCATCAGCACTTTGCCCAGAAAGCCTGTGGCCCCCGTGATGAGAATGGACTTGCCGCCATAGAAAGCTGCAATTGTGGACATGATTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:29270445|29270614 hsa-miR-17-5p 0 0 1
chr12:29270445|29270614 hsa-miR-17-3p 0 0 1
chr12:29270445|29270614 hsa-miR-20a-5p 0 0 1
chr12:29270445|29270614 hsa-miR-20a-3p 0 0 1
chr12:29270445|29270614 hsa-miR-93-5p 0 0 1
chr12:29270445|29270614 hsa-miR-93-3p 0 0 1
chr12:29270445|29270614 hsa-miR-106a-5p 0 0 1
chr12:29270445|29270614 hsa-miR-106a-3p 0 0 1
chr12:29270445|29270614 hsa-miR-107 0 0 1
chr12:29270445|29270614 hsa-miR-106b-5p 0 0 1
chr12:29270445|29270614 hsa-miR-106b-3p 0 0 1
chr12:29270445|29270614 hsa-miR-302a-5p 0 0 1
chr12:29270445|29270614 hsa-miR-302a-3p 0 0 1
chr12:29270445|29270614 hsa-miR-302b-5p 0 0 1
chr12:29270445|29270614 hsa-miR-302b-3p 0 0 1
chr12:29270445|29270614 hsa-miR-302c-5p 0 0 1
chr12:29270445|29270614 hsa-miR-302c-3p 0 0 1
chr12:29270445|29270614 hsa-miR-302d-5p 0 0 1
chr12:29270445|29270614 hsa-miR-302d-3p 0 0 1
chr12:29270445|29270614 hsa-miR-372-5p 0 0 1
chr12:29270445|29270614 hsa-miR-372-3p 0 0 1
chr12:29270445|29270614 hsa-miR-373-5p 0 0 1
chr12:29270445|29270614 hsa-miR-373-3p 0 0 1
chr12:29270445|29270614 hsa-miR-20b-5p 0 0 1
chr12:29270445|29270614 hsa-miR-20b-3p 0 0 1
chr12:29270445|29270614 hsa-miR-520e-5p 0 0 1
chr12:29270445|29270614 hsa-miR-520e-3p 0 0 1
chr12:29270445|29270614 hsa-miR-520b-5p 0 0 1
chr12:29270445|29270614 hsa-miR-520b-3p 0 0 1
chr12:29270445|29270614 hsa-miR-519d-5p 0 0 1
chr12:29270445|29270614 hsa-miR-519d-3p 0 0 1
chr12:29270445|29270614 hsa-miR-520g-5p 0 0 1
chr12:29270445|29270614 hsa-miR-520g-3p 0 0 1
chr12:29270445|29270614 hsa-miR-520h 0 0 1
chr12:29270445|29270614 hsa-miR-612 0 1 1
chr12:29270445|29270614 hsa-miR-652-5p 0 0 1
chr12:29270445|29270614 hsa-miR-652-3p 0 0 1
chr12:29270445|29270614 hsa-miR-1301-5p 0 0 1
chr12:29270445|29270614 hsa-miR-1301-3p 0 0 1
chr12:29270445|29270614 hsa-miR-922 0 0 1
chr12:29270445|29270614 hsa-miR-1226-5p 0 0 1
chr12:29270445|29270614 hsa-miR-1226-3p 0 0 1
chr12:29270445|29270614 hsa-miR-1294 0 0 1
chr12:29270445|29270614 hsa-miR-302e 0 0 1
chr12:29270445|29270614 hsa-miR-512-3p 0 0 1
chr12:29270445|29270614 hsa-miR-1184 0 0 1
chr12:29270445|29270614 hsa-miR-362-5p 0 1 1
chr12:29270445|29270614 hsa-miR-520d-3p 0 0 1
chr12:29270445|29270614 hsa-miR-509-3-5p 0 0 1
chr12:29270445|29270614 hsa-miR-509-5p 0 1 1
chr12:29270445|29270614 hsa-miR-520a-3p 0 0 1
chr12:29270445|29270614 hsa-miR-520c-3p 0 0 1
chr12:29270445|29270614 hsa-miR-103 0 0 1
chr12:29270445|29270614 hsa-miR-1285 0 0 1
chr12:29270445|29270614 hsa-miR-3196 1 0 0
chr12:29270445|29270614 hsa-miR-4467 1 0 0
chr12:29270445|29270614 hsa-miR-4534 0 1 0
chr12:29270445|29270614 hsa-miR-3960 1 0 0
chr12:29270445|29270614 hsa-miR-4730 1 0 0
chr12:29270445|29270614 hsa-miR-4736 1 0 0
chr12:29270445|29270614 hsa-miR-6860 1 1 0
chr12:29270445|29270614 hsa-miR-8075 1 1 0
chr12:29270445|29270614 hsa-miR-4435 1 1 0
chr12:29270445|29270614 hsa-miR-128-1-5p 0 1 0
chr12:29270445|29270614 hsa-miR-1972 1 0 0
chr12:29270445|29270614 hsa-miR-6089 1 0 0
chr12:29270445|29270614 hsa-miR-3187-3p 1 0 0
chr12:29270445|29270614 hsa-miR-6796-5p 1 1 0
chr12:29270445|29270614 hsa-miR-5008-5p 0 1 0
chr12:29270445|29270614 hsa-miR-3190-5p 0 1 0
chr12:29270445|29270614 hsa-miR-6814-5p 0 1 0
chr12:29270445|29270614 hsa-miR-6770-3p 0 1 0
chr12:29270445|29270614 hsa-miR-329-5p 0 1 0
chr12:29270445|29270614 hsa-miR-10400-5p 1 0 0
chr12:29270445|29270614 hsa-miR-5001-5p 1 0 0
chr12:29270445|29270614 hsa-miR-5189-5p 1 1 0
chr12:29270445|29270614 hsa-miR-6889-5p 1 0 0
chr12:29270445|29270614 hsa-miR-3187-5p 0 1 0
chr12:29270445|29270614 hsa-miR-7843-5p 1 0 0
chr12:29270445|29270614 hsa-miR-6762-5p 0 1 0
chr12:29270445|29270614 hsa-miR-6764-5p 0 1 0
chr12:29270445|29270614 hsa-miR-4690-3p 0 1 0
chr12:29270445|29270614 hsa-miR-10395-5p 0 1 0
chr12:29270445|29270614 hsa-miR-7155-3p 0 1 0
chr12:29270445|29270614 hsa-miR-3136-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:29270445|29270614
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MLQCLASLGPHKDVNDFQVWAGAKQLLHQHFAQKACGPRDENGLAAIESCNCGHD
Nucleotide Sequence CTGCTGCAGTGTCTGGCCAGCCTTGGGCCTCACAAGGATGTAAATGACTTTCAGGTCTGGGCTGGTGCGAAACAGCTTCTCCATCAGCACTTTGCCCAGAAAGCCTGTGGCCCCCGTGATGAGAATGGACTTGCCGCCATAGAAAGCTGCAATTGTGGACATGAT
CircID chr12:29270445|29270614
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MTFRSGLVRNSFSISTLPRKPVAPVMRMDLPP
Nucleotide Sequence ATGACTTTCAGGTCTGGGCTGGTGCGAAACAGCTTCTCCATCAGCACTTTGCCCAGAAAGCCTGTGGCCCCCGTGATGAGAATGGACTTGCCGCCATAG
CircID chr12:29270445|29270614
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MSTIAAFYGGKSILITGATGFLGKVLMEKLFRTSPDLKVIYILVRPKAGQTLQQR
Nucleotide Sequence ATGTCCACAATTGCAGCTTTCTATGGCGGCAAGTCCATTCTCATCACGGGGGCCACAGGCTTTCTGGGCAAAGTGCTGATGGAGAAGCTGTTTCGCACCAGCCCAGACCTGAAAGTCATTTACATCCTTGTGAGGCCCAAGGCTGGCCAGACACTGCAGCAGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab