CircRNA Information

General Information
circRNA Basic Information
CircID chr12:32216247|32216459
Strand +
CircType exon
Host Gene ENSG00000151746.13;
Algorism find_circ;CIRI2;DCC;
Sequence GCATTTGGGCAGTCCTTCTCCATCCACCGGAAGGTTGCTGAAGATGGAGAGACTCGGGAGGAAACGCTTCTGCAGGAGTCAGCATCGAAGGAGGCTTACTATCTGGGGAAGATCTTGGAGATGCAGAACGAGCTGAAACAGAGCCGGGCTGTGGTCACTAATGTACAGGCAGAAAACGAGAGGCTCACCGCAGTCGTGCAGGATCTGAAGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:32216247|32216459 hsa-miR-136-5p 0 0 1
chr12:32216247|32216459 hsa-miR-136-3p 0 0 1
chr12:32216247|32216459 hsa-miR-185-5p 0 0 1
chr12:32216247|32216459 hsa-miR-185-3p 0 0 1
chr12:32216247|32216459 hsa-miR-432-5p 0 0 1
chr12:32216247|32216459 hsa-miR-432-3p 0 0 1
chr12:32216247|32216459 hsa-miR-494-5p 0 0 1
chr12:32216247|32216459 hsa-miR-494-3p 0 0 1
chr12:32216247|32216459 hsa-miR-517-5p 0 0 1
chr12:32216247|32216459 hsa-miR-517a-3p 0 0 1
chr12:32216247|32216459 hsa-miR-517b-3p 0 0 1
chr12:32216247|32216459 hsa-miR-517c-3p 0 0 1
chr12:32216247|32216459 hsa-miR-620 0 0 1
chr12:32216247|32216459 hsa-miR-637 1 0 1
chr12:32216247|32216459 hsa-miR-298 1 0 1
chr12:32216247|32216459 hsa-miR-1237-5p 0 0 1
chr12:32216247|32216459 hsa-miR-1237-3p 0 0 1
chr12:32216247|32216459 hsa-miR-1205 0 0 1
chr12:32216247|32216459 hsa-miR-1286 0 0 1
chr12:32216247|32216459 hsa-miR-1248 0 0 1
chr12:32216247|32216459 hsa-miR-1270 1 0 1
chr12:32216247|32216459 hsa-miR-1252-5p 0 0 1
chr12:32216247|32216459 hsa-miR-1252-3p 0 0 1
chr12:32216247|32216459 hsa-miR-1184 0 0 1
chr12:32216247|32216459 hsa-miR-628-5p 0 0 1
chr12:32216247|32216459 hsa-miR-515-5p 0 0 1
chr12:32216247|32216459 hsa-miR-544 0 0 1
chr12:32216247|32216459 hsa-miR-762 1 0 0
chr12:32216247|32216459 hsa-miR-2861 1 0 0
chr12:32216247|32216459 hsa-miR-3185 1 0 0
chr12:32216247|32216459 hsa-miR-3188 1 0 0
chr12:32216247|32216459 hsa-miR-3195 1 0 0
chr12:32216247|32216459 hsa-miR-4271 1 0 0
chr12:32216247|32216459 hsa-miR-3665 1 0 0
chr12:32216247|32216459 hsa-miR-4418 1 0 0
chr12:32216247|32216459 hsa-miR-4421 1 0 0
chr12:32216247|32216459 hsa-miR-4429 1 0 0
chr12:32216247|32216459 hsa-miR-4487 1 0 0
chr12:32216247|32216459 hsa-miR-4533 1 0 0
chr12:32216247|32216459 hsa-miR-4537 1 0 0
chr12:32216247|32216459 hsa-miR-4538 1 0 0
chr12:32216247|32216459 hsa-miR-4656 1 0 0
chr12:32216247|32216459 hsa-miR-4675 1 0 0
chr12:32216247|32216459 hsa-miR-4739 1 0 0
chr12:32216247|32216459 hsa-miR-4741 1 0 0
chr12:32216247|32216459 hsa-miR-5787 1 0 0
chr12:32216247|32216459 hsa-miR-6088 1 0 0
chr12:32216247|32216459 hsa-miR-8089 1 0 0
chr12:32216247|32216459 hsa-miR-7155-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6747-5p 1 0 0
chr12:32216247|32216459 hsa-miR-3150a-3p 1 0 0
chr12:32216247|32216459 hsa-miR-7106-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6825-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6894-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6799-5p 1 0 0
chr12:32216247|32216459 hsa-miR-4695-5p 1 0 0
chr12:32216247|32216459 hsa-miR-4653-3p 1 0 0
chr12:32216247|32216459 hsa-miR-4722-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6805-5p 1 0 0
chr12:32216247|32216459 hsa-miR-23a-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6798-5p 1 0 0
chr12:32216247|32216459 hsa-miR-2467-3p 1 0 0
chr12:32216247|32216459 hsa-miR-6850-5p 1 0 0
chr12:32216247|32216459 hsa-miR-1229-5p 1 0 0
chr12:32216247|32216459 hsa-miR-296-3p 1 0 0
chr12:32216247|32216459 hsa-miR-6771-5p 1 0 0
chr12:32216247|32216459 hsa-miR-3160-3p 1 0 0
chr12:32216247|32216459 hsa-miR-149-3p 1 0 0
chr12:32216247|32216459 hsa-miR-937-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6824-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6781-5p 1 0 0
chr12:32216247|32216459 hsa-miR-423-5p 1 0 0
chr12:32216247|32216459 hsa-miR-744-5p 1 0 0
chr12:32216247|32216459 hsa-miR-5007-5p 1 0 0
chr12:32216247|32216459 hsa-let-7g-3p 1 0 0
chr12:32216247|32216459 hsa-miR-6778-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6812-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6870-5p 1 0 0
chr12:32216247|32216459 hsa-miR-5001-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6743-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6754-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6803-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6780a-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6879-5p 1 0 0
chr12:32216247|32216459 hsa-miR-7111-5p 1 0 0
chr12:32216247|32216459 hsa-miR-4728-5p 1 0 0
chr12:32216247|32216459 hsa-miR-5196-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6780b-5p 1 0 0
chr12:32216247|32216459 hsa-miR-10526-3p 1 0 0
chr12:32216247|32216459 hsa-miR-4725-3p 1 0 0
chr12:32216247|32216459 hsa-miR-4745-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6735-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6795-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6846-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6848-5p 1 0 0
chr12:32216247|32216459 hsa-miR-4723-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6511a-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6511b-5p 1 0 0
chr12:32216247|32216459 hsa-miR-4665-5p 1 0 0
chr12:32216247|32216459 hsa-miR-7151-3p 1 0 0
chr12:32216247|32216459 hsa-miR-4667-5p 1 0 0
chr12:32216247|32216459 hsa-miR-6718-5p 1 0 0
chr12:32216247|32216459 hsa-miR-320a-3p 1 0 0
chr12:32216247|32216459 hsa-miR-320b 1 0 0
chr12:32216247|32216459 hsa-miR-320c 1 0 0
chr12:32216247|32216459 hsa-miR-4756-5p 1 0 0
chr12:32216247|32216459 hsa-miR-320d 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:32216247|32216459
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MERLGRKRFCRSQHRRRLTIWGRSWRCRTS*
Nucleotide Sequence ATGGAGAGACTCGGGAGGAAACGCTTCTGCAGGAGTCAGCATCGAAGGAGGCTTACTATCTGGGGAAGATCTTGGAGATGCAGAACGAGCTGA
CircID chr12:32216247|32216459
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MQNELKQSRAVVTNVQAENERLTAVVQDLKE
Nucleotide Sequence ATGCAGAACGAGCTGAAACAGAGCCGGGCTGTGGTCACTAATGTACAGGCAGAAAACGAGAGGCTCACCGCAGTCGTGCAGGATCTGAAGGAG
CircID chr12:32216247|32216459
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MHDCGEPLVFCLYISDHSPALFQLVLHLQDLPQIVSLLRC
Nucleotide Sequence CTGCACGACTGCGGTGAGCCTCTCGTTTTCTGCCTGTACATTAGTGACCACAGCCCGGCTCTGTTTCAGCTCGTTCTGCATCTCCAAGATCTTCCCCAGATAGTAAGCCTCCTTCGATGCTGA
CircID chr12:32216247|32216459
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MQKRFLPSLSIFSNLPVDGEGLPKC
Nucleotide Sequence CTGCAGAAGCGTTTCCTCCCGAGTCTCTCCATCTTCAGCAACCTTCCGGTGGATGGAGAAGGACTGCCCAAATGC
CircID chr12:32216247|32216459
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MLTPAEAFPPESLHLQQPSGGWRRTAQM
Nucleotide Sequence ATGCTGACTCCTGCAGAAGCGTTTCCTCCCGAGTCTCTCCATCTTCAGCAACCTTCCGGTGGATGGAGAAGGACTGCCCAAATG
CircID chr12:32216247|32216459
ORF Type ORF4
Protein Length 48
Nucleotide Length 144
Protein Sequence MQESASKEAYYLGKILEMQNELKQSRAVVTNVQAENERLTAVVQDLKE
Nucleotide Sequence CTGCAGGAGTCAGCATCGAAGGAGGCTTACTATCTGGGGAAGATCTTGGAGATGCAGAACGAGCTGAAACAGAGCCGGGCTGTGGTCACTAATGTACAGGCAGAAAACGAGAGGCTCACCGCAGTCGTGCAGGATCTGAAGGAG
CircID chr12:32216247|32216459
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MGSPSPSTGRLLKMERLGRKRFCRSQHRRRLTIWGRSWRCRTS
Nucleotide Sequence TTGGGCAGTCCTTCTCCATCCACCGGAAGGTTGCTGAAGATGGAGAGACTCGGGAGGAAACGCTTCTGCAGGAGTCAGCATCGAAGGAGGCTTACTATCTGGGGAAGATCTTGGAGATGCAGAACGAGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr12:32216247|32216459 ELAVL1 1 1 2
chr12:32216247|32216459 PRPF8 0 1 0
chr12:32216247|32216459 FMR1 0 0 1
chr12:32216247|32216459 CPSF4 1 0 0
chr12:32216247|32216459 CPSF3 1 0 0
chr12:32216247|32216459 FUS 0 1 1
chr12:32216247|32216459 SRSF1 0 2 6
chr12:32216247|32216459 NOP58 0 2 1
chr12:32216247|32216459 U2AF2 5 13 0
chr12:32216247|32216459 SRSF9 0 0 2
chr12:32216247|32216459 DDX54 0 0 1
chr12:32216247|32216459 HNRNPL 0 1 0
chr12:32216247|32216459 RBM15 1 0 0
chr12:32216247|32216459 HNRNPC 0 2 0
chr12:32216247|32216459 MSI1 0 1 0
chr12:32216247|32216459 HNRNPA1 2 1 0
chr12:32216247|32216459 RANGAP1 0 0 1
chr12:32216247|32216459 LIN28B 1 0 0
chr12:32216247|32216459 IGF2BP2 1 1 3
chr12:32216247|32216459 TARDBP 0 1 0
chr12:32216247|32216459 BUD13 0 0 1
chr12:32216247|32216459 RBFOX2 0 1 0
chr12:32216247|32216459 CSTF2T 1 0 1
chr12:32216247|32216459 CSTF2 2 0 0
chr12:32216247|32216459 WDR33 1 0 0
chr12:32216247|32216459 AIFM1 0 0 1
chr12:32216247|32216459 EIF4A3 1 8 2
chr12:32216247|32216459 FBL 0 1 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab