CircRNA Information

General Information
circRNA Basic Information
CircID chr12:48768622|48768963
Strand +
CircType exon
Host Gene ENSG00000174233.10;
Algorism CIRI2;
Sequence AGCACGGGGGTCCCCGACCGAATCCAGGTGAGGGGGATATGAGCAGGGGCTGGGAGGAACATGGGCCCGGAGGGCTTCCACAGGTGTCTCTGCAGTCTGCTAGGACAGGGGTAGGGTGGCTAGTGTTCTGTGTATGGTGGGGCAGGGACTGGGGGAAGGGAGCTAGCCTGACTAGAGAACCCCTGGGCCCCTGCAAATGCAGCAGGAAGGATTCCAGGCTAAGCGGGCTCCCCTCCCACTCCCCCAGGTGACCACGGACCTGTACCAGGTTCTAGCTGCCAAGGGCTACCAGCTGGAGTGTCGAGGGGTGGTCAAGGTGAAGGGCAAGGGGGAGATGACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:48768622|48768963 hsa-miR-370-5p 0 0 1
chr12:48768622|48768963 hsa-miR-370-3p 0 0 1
chr12:48768622|48768963 hsa-miR-412-5p 0 0 1
chr12:48768622|48768963 hsa-miR-412-3p 0 0 1
chr12:48768622|48768963 hsa-miR-484 0 0 1
chr12:48768622|48768963 hsa-miR-552-5p 0 0 1
chr12:48768622|48768963 hsa-miR-552-3p 0 0 1
chr12:48768622|48768963 hsa-miR-554 0 0 1
chr12:48768622|48768963 hsa-miR-596 0 0 1
chr12:48768622|48768963 hsa-miR-619-5p 0 0 1
chr12:48768622|48768963 hsa-miR-619-3p 0 0 1
chr12:48768622|48768963 hsa-miR-625-5p 0 0 1
chr12:48768622|48768963 hsa-miR-625-3p 0 0 1
chr12:48768622|48768963 hsa-miR-637 0 0 1
chr12:48768622|48768963 hsa-miR-766-5p 0 0 1
chr12:48768622|48768963 hsa-miR-766-3p 0 0 1
chr12:48768622|48768963 hsa-miR-874-5p 0 0 1
chr12:48768622|48768963 hsa-miR-874-3p 0 0 1
chr12:48768622|48768963 hsa-miR-938 0 0 1
chr12:48768622|48768963 hsa-miR-939-5p 0 0 1
chr12:48768622|48768963 hsa-miR-939-3p 0 0 1
chr12:48768622|48768963 hsa-miR-1251-5p 0 0 1
chr12:48768622|48768963 hsa-miR-1251-3p 0 0 1
chr12:48768622|48768963 hsa-miR-1275 0 1 1
chr12:48768622|48768963 hsa-miR-671-5p 0 1 1
chr12:48768622|48768963 hsa-miR-542-5p 0 0 1
chr12:48768622|48768963 hsa-miR-885-3p 0 0 1
chr12:48768622|48768963 hsa-miR-339-5p 0 1 1
chr12:48768622|48768963 hsa-miR-490-3p 0 0 1
chr12:48768622|48768963 hsa-miR-508-5p 0 1 1
chr12:48768622|48768963 hsa-miR-361-3p 0 0 1
chr12:48768622|48768963 hsa-miR-1207-3p 0 0 1
chr12:48768622|48768963 hsa-miR-767-3p 1 1 1
chr12:48768622|48768963 hsa-miR-324-3p 0 0 1
chr12:48768622|48768963 hsa-miR-509-3-5p 0 0 1
chr12:48768622|48768963 hsa-miR-509-5p 0 0 1
chr12:48768622|48768963 hsa-miR-500 0 0 1
chr12:48768622|48768963 hsa-miR-1254 0 0 1
chr12:48768622|48768963 hsa-miR-129-3p 0 0 1
chr12:48768622|48768963 hsa-miR-326 1 1 0
chr12:48768622|48768963 hsa-miR-346 1 0 0
chr12:48768622|48768963 hsa-miR-661 1 0 0
chr12:48768622|48768963 hsa-miR-1470 1 1 0
chr12:48768622|48768963 hsa-miR-1913 1 0 0
chr12:48768622|48768963 hsa-miR-1976 1 0 0
chr12:48768622|48768963 hsa-miR-4326 0 1 0
chr12:48768622|48768963 hsa-miR-4494 0 1 0
chr12:48768622|48768963 hsa-miR-5698 0 1 0
chr12:48768622|48768963 hsa-miR-378j 0 1 0
chr12:48768622|48768963 hsa-miR-150-3p 1 1 0
chr12:48768622|48768963 hsa-miR-4433b-3p 0 1 0
chr12:48768622|48768963 hsa-miR-6749-3p 1 1 0
chr12:48768622|48768963 hsa-miR-4747-3p 1 0 0
chr12:48768622|48768963 hsa-miR-154-5p 1 0 0
chr12:48768622|48768963 hsa-miR-4726-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6836-3p 1 0 0
chr12:48768622|48768963 hsa-miR-212-5p 0 1 0
chr12:48768622|48768963 hsa-miR-149-5p 0 1 0
chr12:48768622|48768963 hsa-miR-6720-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6892-3p 1 0 0
chr12:48768622|48768963 hsa-miR-210-5p 1 1 0
chr12:48768622|48768963 hsa-miR-7851-3p 0 1 0
chr12:48768622|48768963 hsa-miR-1225-3p 1 0 0
chr12:48768622|48768963 hsa-miR-296-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6875-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6840-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6849-3p 1 0 0
chr12:48768622|48768963 hsa-miR-7110-3p 1 0 0
chr12:48768622|48768963 hsa-miR-1915-5p 0 1 0
chr12:48768622|48768963 hsa-miR-6845-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6796-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6827-5p 1 1 0
chr12:48768622|48768963 hsa-miR-6765-3p 0 1 0
chr12:48768622|48768963 hsa-miR-6774-3p 1 0 0
chr12:48768622|48768963 hsa-miR-30b-3p 0 1 0
chr12:48768622|48768963 hsa-miR-5008-5p 1 1 0
chr12:48768622|48768963 hsa-miR-6740-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6772-3p 1 0 0
chr12:48768622|48768963 hsa-miR-4763-5p 1 0 0
chr12:48768622|48768963 hsa-miR-1247-5p 1 0 0
chr12:48768622|48768963 hsa-miR-3944-3p 0 1 0
chr12:48768622|48768963 hsa-miR-6757-3p 1 1 0
chr12:48768622|48768963 hsa-miR-7113-3p 1 0 0
chr12:48768622|48768963 hsa-miR-3667-3p 0 1 0
chr12:48768622|48768963 hsa-miR-7111-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6736-3p 0 1 0
chr12:48768622|48768963 hsa-miR-3158-5p 1 1 0
chr12:48768622|48768963 hsa-miR-6769a-3p 1 1 0
chr12:48768622|48768963 hsa-miR-1236-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6811-3p 1 0 0
chr12:48768622|48768963 hsa-miR-7106-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6785-3p 1 0 0
chr12:48768622|48768963 hsa-miR-4687-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6813-3p 1 1 0
chr12:48768622|48768963 hsa-miR-2114-5p 0 1 0
chr12:48768622|48768963 hsa-miR-584-3p 0 1 0
chr12:48768622|48768963 hsa-miR-4758-3p 1 1 0
chr12:48768622|48768963 hsa-miR-1910-5p 1 0 0
chr12:48768622|48768963 hsa-miR-597-3p 0 1 0
chr12:48768622|48768963 hsa-miR-6752-3p 1 1 0
chr12:48768622|48768963 hsa-miR-3074-5p 0 1 0
chr12:48768622|48768963 hsa-miR-4632-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6886-3p 1 1 0
chr12:48768622|48768963 hsa-miR-5088-3p 1 0 0
chr12:48768622|48768963 hsa-miR-4749-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6795-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6748-3p 1 0 0
chr12:48768622|48768963 hsa-miR-4433a-5p 1 0 0
chr12:48768622|48768963 hsa-miR-5584-3p 1 0 0
chr12:48768622|48768963 hsa-miR-4433b-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6734-3p 0 1 0
chr12:48768622|48768963 hsa-miR-6515-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6812-3p 1 0 0
chr12:48768622|48768963 hsa-miR-1249-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6729-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6847-3p 0 1 0
chr12:48768622|48768963 hsa-miR-6800-3p 1 0 0
chr12:48768622|48768963 hsa-miR-431-3p 1 0 0
chr12:48768622|48768963 hsa-miR-3162-3p 1 1 0
chr12:48768622|48768963 hsa-miR-676-3p 0 1 0
chr12:48768622|48768963 hsa-miR-5587-5p 0 1 0
chr12:48768622|48768963 hsa-miR-4716-5p 1 1 0
chr12:48768622|48768963 hsa-miR-1233-5p 1 1 0
chr12:48768622|48768963 hsa-miR-4763-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6778-5p 0 1 0
chr12:48768622|48768963 hsa-miR-6870-5p 0 1 0
chr12:48768622|48768963 hsa-miR-6813-5p 0 1 0
chr12:48768622|48768963 hsa-miR-6722-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6763-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6779-5p 0 1 0
chr12:48768622|48768963 hsa-miR-6780a-5p 0 1 0
chr12:48768622|48768963 hsa-miR-7111-5p 0 1 0
chr12:48768622|48768963 hsa-miR-4685-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6754-3p 0 1 0
chr12:48768622|48768963 hsa-miR-4728-5p 0 1 0
chr12:48768622|48768963 hsa-miR-1909-3p 1 1 0
chr12:48768622|48768963 hsa-miR-4665-5p 0 1 0
chr12:48768622|48768963 hsa-miR-6877-3p 1 0 0
chr12:48768622|48768963 hsa-miR-10398-5p 1 1 0
chr12:48768622|48768963 hsa-miR-6762-5p 1 0 0
chr12:48768622|48768963 hsa-miR-4722-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6893-3p 0 1 0
chr12:48768622|48768963 hsa-miR-6756-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6792-3p 1 1 0
chr12:48768622|48768963 hsa-miR-6805-3p 1 0 0
chr12:48768622|48768963 hsa-miR-6810-3p 1 1 0
chr12:48768622|48768963 hsa-miR-10392-3p 1 0 0
chr12:48768622|48768963 hsa-miR-3059-5p 1 1 0
chr12:48768622|48768963 hsa-miR-3130-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6819-3p 1 0 0
chr12:48768622|48768963 hsa-miR-330-5p 1 1 0
chr12:48768622|48768963 hsa-miR-487b-5p 1 0 0
chr12:48768622|48768963 hsa-miR-6764-5p 0 1 0
chr12:48768622|48768963 hsa-miR-487a-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:48768622|48768963
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MQMQQEGFQAKRAPLPLPQVTTDLYQVLAAKGYQLECRGVVKVKGKGEMT
Nucleotide Sequence CTGCAAATGCAGCAGGAAGGATTCCAGGCTAAGCGGGCTCCCCTCCCACTCCCCCAGGTGACCACGGACCTGTACCAGGTTCTAGCTGCCAAGGGCTACCAGCTGGAGTGTCGAGGGGTGGTCAAGGTGAAGGGCAAGGGGGAGATGACC
CircID chr12:48768622|48768963
ORF Type ORF2
Protein Length 70
Nucleotide Length 213
Protein Sequence MSRGWEEHGPGGLPQVSLQSARTGVGWLVFCVWWGRDWGKGASLTREPLGPCKCSRKDSRLSGLPSHSPR
Nucleotide Sequence ATGAGCAGGGGCTGGGAGGAACATGGGCCCGGAGGGCTTCCACAGGTGTCTCTGCAGTCTGCTAGGACAGGGGTAGGGTGGCTAGTGTTCTGTGTATGGTGGGGCAGGGACTGGGGGAAGGGAGCTAGCCTGACTAGAGAACCCCTGGGCCCCTGCAAATGCAGCAGGAAGGATTCCAGGCTAAGCGGGCTCCCCTCCCACTCCCCCAGGTGA
CircID chr12:48768622|48768963
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MAARTWYRSVVTWGSGRGARLAWNPSCCICRGPGVL
Nucleotide Sequence TTGGCAGCTAGAACCTGGTACAGGTCCGTGGTCACCTGGGGGAGTGGGAGGGGAGCCCGCTTAGCCTGGAATCCTTCCTGCTGCATTTGCAGGGGCCCAGGGGTTCTCTAG
CircID chr12:48768622|48768963
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MQRHLWKPSGPMFLPAPAHIPLTWIRSGTPV
Nucleotide Sequence CTGCAGAGACACCTGTGGAAGCCCTCCGGGCCCATGTTCCTCCCAGCCCCTGCTCATATCCCCCTCACCTGGATTCGGTCGGGGACCCCCGTG
CircID chr12:48768622|48768963
ORF Type ORF5
Protein Length 89
Nucleotide Length 267
Protein Sequence MVQVRGHLGEWEGSPLSLESFLLHLQGPRGSLVRLAPFPQSLPHHTQNTSHPTPVLADCRDTCGSPPGPCSSQPLLISPSPGFGRGPPC
Nucleotide Sequence CTGGTACAGGTCCGTGGTCACCTGGGGGAGTGGGAGGGGAGCCCGCTTAGCCTGGAATCCTTCCTGCTGCATTTGCAGGGGCCCAGGGGTTCTCTAGTCAGGCTAGCTCCCTTCCCCCAGTCCCTGCCCCACCATACACAGAACACTAGCCACCCTACCCCTGTCCTAGCAGACTGCAGAGACACCTGTGGAAGCCCTCCGGGCCCATGTTCCTCCCAGCCCCTGCTCATATCCCCCTCACCTGGATTCGGTCGGGGACCCCCGTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab