CircRNA Information

General Information
circRNA Basic Information
CircID chr12:48826443|48826806
Strand -
CircType exon
Host Gene ENSG00000167535.6;
Algorism CIRI2;
Sequence CATCAACCACCCAGCACAGCTGGCCAAGACCTCGCTGGCCCCCATCATCGTCTTTGTCAAAGTGTCCTCACCAAAGGTAAGTCAGCTGGGCTCATGGAGGAGGCCCACAGGGCTATCCTACTAGAATGTGGCATGATTCTACTTGGTCCCTGCCTGGGGCACCTGAGTTCCCTTTTCCTGCTGCCCTTAACACAACTCTGAGTCATCCTCACCTGCTACTGATGCCACAAGTGGAAGAAATGCCTAGCTCTGCCCGGGCTCAGCTCTGCCCAGAGTCCTGAGAGACTCCAGGCCTAGCTCTGCCCTCCCCGCTCAGGTACTCCAGCGTCTCATTCGCTCCCGGGGGAAGTCACAGATGAAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:48826443|48826806 hsa-miR-214-5p 0 0 1
chr12:48826443|48826806 hsa-miR-214-3p 0 0 1
chr12:48826443|48826806 hsa-miR-134-5p 0 0 1
chr12:48826443|48826806 hsa-miR-134-3p 0 0 1
chr12:48826443|48826806 hsa-miR-326 0 0 1
chr12:48826443|48826806 hsa-miR-325 0 1 1
chr12:48826443|48826806 hsa-miR-510-5p 0 0 1
chr12:48826443|48826806 hsa-miR-510-3p 0 0 1
chr12:48826443|48826806 hsa-miR-563 0 0 1
chr12:48826443|48826806 hsa-miR-588 0 0 1
chr12:48826443|48826806 hsa-miR-612 1 1 1
chr12:48826443|48826806 hsa-miR-617 0 0 1
chr12:48826443|48826806 hsa-miR-936 1 0 1
chr12:48826443|48826806 hsa-miR-940 0 1 1
chr12:48826443|48826806 hsa-miR-1293 0 0 1
chr12:48826443|48826806 hsa-miR-1266-5p 0 0 1
chr12:48826443|48826806 hsa-miR-1266-3p 0 0 1
chr12:48826443|48826806 hsa-miR-1197 0 0 1
chr12:48826443|48826806 hsa-miR-125a-3p 1 1 1
chr12:48826443|48826806 hsa-miR-139-3p 0 0 1
chr12:48826443|48826806 hsa-miR-1225-3p 0 0 1
chr12:48826443|48826806 hsa-miR-1224-5p 1 0 1
chr12:48826443|48826806 hsa-miR-146b-3p 0 1 1
chr12:48826443|48826806 hsa-miR-1289 0 0 1
chr12:48826443|48826806 hsa-miR-628-3p 0 0 1
chr12:48826443|48826806 hsa-miR-876-3p 0 0 1
chr12:48826443|48826806 hsa-miR-199b-3p 0 0 1
chr12:48826443|48826806 hsa-miR-199a-3p 0 0 1
chr12:48826443|48826806 hsa-miR-1207-5p 1 1 1
chr12:48826443|48826806 hsa-miR-330-5p 0 0 1
chr12:48826443|48826806 hsa-miR-1233 0 0 1
chr12:48826443|48826806 hsa-miR-9 0 0 1
chr12:48826443|48826806 hsa-miR-1285 0 0 1
chr12:48826443|48826806 hsa-miR-514 0 0 1
chr12:48826443|48826806 hsa-miR-1254 0 0 1
chr12:48826443|48826806 hsa-miR-129-3p 0 0 1
chr12:48826443|48826806 hsa-miR-1185 0 0 1
chr12:48826443|48826806 hsa-miR-604 1 0 0
chr12:48826443|48826806 hsa-miR-637 1 1 0
chr12:48826443|48826806 hsa-miR-650 1 0 0
chr12:48826443|48826806 hsa-miR-661 1 0 0
chr12:48826443|48826806 hsa-miR-762 1 0 0
chr12:48826443|48826806 hsa-miR-1202 1 0 0
chr12:48826443|48826806 hsa-miR-1538 1 0 0
chr12:48826443|48826806 hsa-miR-3132 1 1 0
chr12:48826443|48826806 hsa-miR-3141 1 0 0
chr12:48826443|48826806 hsa-miR-3154 0 1 0
chr12:48826443|48826806 hsa-miR-4309 0 1 0
chr12:48826443|48826806 hsa-miR-4259 1 0 0
chr12:48826443|48826806 hsa-miR-4260 1 0 0
chr12:48826443|48826806 hsa-miR-4254 0 1 0
chr12:48826443|48826806 hsa-miR-3651 0 1 0
chr12:48826443|48826806 hsa-miR-3665 1 0 0
chr12:48826443|48826806 hsa-miR-3714 1 0 0
chr12:48826443|48826806 hsa-miR-3907 1 1 0
chr12:48826443|48826806 hsa-miR-4451 0 1 0
chr12:48826443|48826806 hsa-miR-3135b 0 1 0
chr12:48826443|48826806 hsa-miR-4462 1 0 0
chr12:48826443|48826806 hsa-miR-4466 1 0 0
chr12:48826443|48826806 hsa-miR-4471 0 1 0
chr12:48826443|48826806 hsa-miR-4484 1 0 0
chr12:48826443|48826806 hsa-miR-2392 1 0 0
chr12:48826443|48826806 hsa-miR-4514 0 1 0
chr12:48826443|48826806 hsa-miR-4530 1 0 0
chr12:48826443|48826806 hsa-miR-4537 1 0 0
chr12:48826443|48826806 hsa-miR-3977 0 1 0
chr12:48826443|48826806 hsa-miR-4642 0 1 0
chr12:48826443|48826806 hsa-miR-4647 1 0 0
chr12:48826443|48826806 hsa-miR-4651 1 0 0
chr12:48826443|48826806 hsa-miR-4673 0 1 0
chr12:48826443|48826806 hsa-miR-4675 1 0 0
chr12:48826443|48826806 hsa-miR-4688 1 0 0
chr12:48826443|48826806 hsa-miR-4689 1 0 0
chr12:48826443|48826806 hsa-miR-4706 1 1 0
chr12:48826443|48826806 hsa-miR-4710 1 1 0
chr12:48826443|48826806 hsa-miR-4721 1 0 0
chr12:48826443|48826806 hsa-miR-5090 1 0 0
chr12:48826443|48826806 hsa-miR-5193 0 1 0
chr12:48826443|48826806 hsa-miR-5697 0 1 0
chr12:48826443|48826806 hsa-miR-5787 1 0 0
chr12:48826443|48826806 hsa-miR-6085 1 0 0
chr12:48826443|48826806 hsa-miR-6090 1 1 0
chr12:48826443|48826806 hsa-miR-6132 1 1 0
chr12:48826443|48826806 hsa-miR-6165 0 1 0
chr12:48826443|48826806 hsa-miR-6860 1 1 0
chr12:48826443|48826806 hsa-miR-8080 1 0 0
chr12:48826443|48826806 hsa-miR-8089 1 0 0
chr12:48826443|48826806 hsa-miR-12128 1 0 0
chr12:48826443|48826806 hsa-miR-222-5p 0 1 0
chr12:48826443|48826806 hsa-miR-29a-5p 0 1 0
chr12:48826443|48826806 hsa-miR-6734-5p 1 0 0
chr12:48826443|48826806 hsa-miR-504-3p 1 0 0
chr12:48826443|48826806 hsa-miR-1247-3p 1 1 0
chr12:48826443|48826806 hsa-miR-6747-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6765-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6825-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6894-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6799-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6510-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6804-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3934-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6089 1 0 0
chr12:48826443|48826806 hsa-miR-4722-5p 1 0 0
chr12:48826443|48826806 hsa-miR-593-5p 1 0 0
chr12:48826443|48826806 hsa-miR-24-3p 1 0 0
chr12:48826443|48826806 hsa-miR-6820-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6840-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6727-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3622b-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6721-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4655-5p 1 0 0
chr12:48826443|48826806 hsa-miR-197-5p 1 0 0
chr12:48826443|48826806 hsa-miR-8069 1 0 0
chr12:48826443|48826806 hsa-miR-5589-5p 0 1 0
chr12:48826443|48826806 hsa-miR-7108-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3605-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4711-5p 0 1 0
chr12:48826443|48826806 hsa-miR-1292-5p 1 0 0
chr12:48826443|48826806 hsa-miR-503-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3190-3p 1 0 0
chr12:48826443|48826806 hsa-miR-6798-5p 1 0 0
chr12:48826443|48826806 hsa-miR-486-3p 1 0 0
chr12:48826443|48826806 hsa-miR-6810-5p 1 0 0
chr12:48826443|48826806 hsa-miR-7855-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6786-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6852-5p 0 1 0
chr12:48826443|48826806 hsa-miR-5088-5p 1 0 0
chr12:48826443|48826806 hsa-miR-1226-5p 1 1 0
chr12:48826443|48826806 hsa-miR-1229-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4640-5p 1 1 0
chr12:48826443|48826806 hsa-miR-3691-5p 1 0 0
chr12:48826443|48826806 hsa-miR-885-3p 1 0 0
chr12:48826443|48826806 hsa-miR-1908-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6771-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4690-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6823-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6749-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3648 1 0 0
chr12:48826443|48826806 hsa-miR-3160-3p 0 1 0
chr12:48826443|48826806 hsa-miR-149-3p 0 1 0
chr12:48826443|48826806 hsa-miR-6717-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3616-3p 1 1 0
chr12:48826443|48826806 hsa-miR-937-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6824-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6789-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6781-5p 1 0 0
chr12:48826443|48826806 hsa-miR-7112-5p 1 1 0
chr12:48826443|48826806 hsa-miR-423-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6826-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3944-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6801-5p 1 0 0
chr12:48826443|48826806 hsa-miR-5004-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3664-3p 0 1 0
chr12:48826443|48826806 hsa-miR-6779-3p 0 1 0
chr12:48826443|48826806 hsa-miR-5587-3p 0 1 0
chr12:48826443|48826806 hsa-miR-514a-5p 0 1 0
chr12:48826443|48826806 hsa-miR-4763-3p 1 1 0
chr12:48826443|48826806 hsa-miR-6778-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6787-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6893-5p 1 1 0
chr12:48826443|48826806 hsa-miR-1343-5p 1 0 0
chr12:48826443|48826806 hsa-miR-5001-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6726-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6743-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6756-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6803-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6813-5p 1 0 0
chr12:48826443|48826806 hsa-miR-1249-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6722-3p 1 0 0
chr12:48826443|48826806 hsa-miR-6751-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6779-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6780a-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6797-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6808-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6879-5p 1 1 0
chr12:48826443|48826806 hsa-miR-7111-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4728-5p 1 1 0
chr12:48826443|48826806 hsa-miR-5189-5p 0 1 0
chr12:48826443|48826806 hsa-miR-6836-5p 1 0 0
chr12:48826443|48826806 hsa-miR-10392-5p 1 0 0
chr12:48826443|48826806 hsa-miR-10526-3p 0 1 0
chr12:48826443|48826806 hsa-miR-1237-5p 1 0 0
chr12:48826443|48826806 hsa-miR-1909-3p 1 0 0
chr12:48826443|48826806 hsa-miR-328-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4632-5p 1 1 0
chr12:48826443|48826806 hsa-miR-4649-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4726-5p 1 1 0
chr12:48826443|48826806 hsa-miR-4745-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4749-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6729-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6735-5p 1 1 0
chr12:48826443|48826806 hsa-miR-675-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6777-5p 0 1 0
chr12:48826443|48826806 hsa-miR-6795-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6846-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6848-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6858-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6883-5p 0 1 0
chr12:48826443|48826806 hsa-miR-6887-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6889-5p 0 1 0
chr12:48826443|48826806 hsa-miR-3187-5p 1 1 0
chr12:48826443|48826806 hsa-miR-4436b-3p 1 1 0
chr12:48826443|48826806 hsa-miR-4723-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6885-5p 1 0 0
chr12:48826443|48826806 hsa-miR-939-5p 1 1 0
chr12:48826443|48826806 hsa-miR-365a-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3085-5p 1 0 0
chr12:48826443|48826806 hsa-miR-10396a-3p 1 0 0
chr12:48826443|48826806 hsa-miR-10396b-3p 1 0 0
chr12:48826443|48826806 hsa-miR-3198 0 1 0
chr12:48826443|48826806 hsa-miR-6731-5p 1 0 0
chr12:48826443|48826806 hsa-miR-1199-5p 1 1 0
chr12:48826443|48826806 hsa-miR-7843-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6736-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6791-3p 0 1 0
chr12:48826443|48826806 hsa-miR-4700-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3679-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6785-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6724-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6791-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6762-5p 1 1 0
chr12:48826443|48826806 hsa-miR-6822-5p 0 1 0
chr12:48826443|48826806 hsa-miR-6792-3p 0 1 0
chr12:48826443|48826806 hsa-miR-6829-3p 1 1 0
chr12:48826443|48826806 hsa-miR-9851-3p 1 0 0
chr12:48826443|48826806 hsa-miR-4691-5p 0 1 0
chr12:48826443|48826806 hsa-miR-6500-5p 1 0 0
chr12:48826443|48826806 hsa-miR-3619-5p 1 0 0
chr12:48826443|48826806 hsa-miR-4690-3p 1 0 0
chr12:48826443|48826806 hsa-miR-6838-5p 1 0 0
chr12:48826443|48826806 hsa-miR-6820-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:48826443|48826806
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MEEAHRAILLECGMILLGPCLGHLSSLFLLPLTQL
Nucleotide Sequence ATGGAGGAGGCCCACAGGGCTATCCTACTAGAATGTGGCATGATTCTACTTGGTCCCTGCCTGGGGCACCTGAGTTCCCTTTTCCTGCTGCCCTTAACACAACTCTGA
CircID chr12:48826443|48826806
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MAKTSLAPIIVFVKVSSPKVSQLGSWRRPTGLSY
Nucleotide Sequence CTGGCCAAGACCTCGCTGGCCCCCATCATCGTCTTTGTCAAAGTGTCCTCACCAAAGGTAAGTCAGCTGGGCTCATGGAGGAGGCCCACAGGGCTATCCTACTAG
CircID chr12:48826443|48826806
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MPRVLRDSRPSSALPAQVLQRLIRSRGKSQMKH
Nucleotide Sequence CTGCCCAGAGTCCTGAGAGACTCCAGGCCTAGCTCTGCCCTCCCCGCTCAGGTACTCCAGCGTCTCATTCGCTCCCGGGGGAAGTCACAGATGAAGCAC
CircID chr12:48826443|48826806
ORF Type ORF4
Protein Length 51
Nucleotide Length 156
Protein Sequence MWHDSTWSLPGAPEFPFPAALNTTLSHPHLLLMPQVEEMPSSARAQLCPES
Nucleotide Sequence ATGTGGCATGATTCTACTTGGTCCCTGCCTGGGGCACCTGAGTTCCCTTTTCCTGCTGCCCTTAACACAACTCTGAGTCATCCTCACCTGCTACTGATGCCACAAGTGGAAGAAATGCCTAGCTCTGCCCGGGCTCAGCTCTGCCCAGAGTCCTGA
CircID chr12:48826443|48826806
ORF Type ORF5
Protein Length 49
Nucleotide Length 150
Protein Sequence MTQSCVKGSRKRELRCPRQGPSRIMPHSSRIALWASSMSPADLPLVRTL
Nucleotide Sequence ATGACTCAGAGTTGTGTTAAGGGCAGCAGGAAAAGGGAACTCAGGTGCCCCAGGCAGGGACCAAGTAGAATCATGCCACATTCTAGTAGGATAGCCCTGTGGGCCTCCTCCATGAGCCCAGCTGACTTACCTTTGGTGAGGACACTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab