CircRNA Information

General Information
circRNA Basic Information
CircID chr12:48830120|48830283
Strand +
CircType exon
Host Gene ENSG00000174243.8;
Algorism CIRI2;
Sequence GACGCTGTCGGAGGCAGGGAGAGCAAATTACCACAGCTTCTTGGCCCAGTTCTGCCCTTCTTTGCTTTGGGATTGCACTGGGCCATCAGCTCATGCCAGGCTATGGGGGCAGCCAGTTGGCATTGCTCCCCAGACTGAACAGAAACCTGGCCGCCGGATGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:48830120|48830283 hsa-miR-148a-5p 0 0 1
chr12:48830120|48830283 hsa-miR-148a-3p 0 0 1
chr12:48830120|48830283 hsa-miR-130a-5p 0 0 1
chr12:48830120|48830283 hsa-miR-130a-3p 0 0 1
chr12:48830120|48830283 hsa-miR-152-5p 0 0 1
chr12:48830120|48830283 hsa-miR-152-3p 0 0 1
chr12:48830120|48830283 hsa-miR-301a-5p 0 0 1
chr12:48830120|48830283 hsa-miR-301a-3p 0 0 1
chr12:48830120|48830283 hsa-miR-130b-5p 0 0 1
chr12:48830120|48830283 hsa-miR-130b-3p 0 0 1
chr12:48830120|48830283 hsa-miR-148b-5p 0 0 1
chr12:48830120|48830283 hsa-miR-148b-3p 0 0 1
chr12:48830120|48830283 hsa-miR-558 0 0 1
chr12:48830120|48830283 hsa-miR-596 0 0 1
chr12:48830120|48830283 hsa-miR-604 0 0 1
chr12:48830120|48830283 hsa-miR-622 0 0 1
chr12:48830120|48830283 hsa-miR-637 0 0 1
chr12:48830120|48830283 hsa-miR-647 0 1 1
chr12:48830120|48830283 hsa-miR-454-5p 0 0 1
chr12:48830120|48830283 hsa-miR-454-3p 0 0 1
chr12:48830120|48830283 hsa-miR-892b 0 1 1
chr12:48830120|48830283 hsa-miR-301b-5p 0 0 1
chr12:48830120|48830283 hsa-miR-301b-3p 0 0 1
chr12:48830120|48830283 hsa-miR-939-5p 0 0 1
chr12:48830120|48830283 hsa-miR-939-3p 0 0 1
chr12:48830120|48830283 hsa-miR-1825 0 1 1
chr12:48830120|48830283 hsa-miR-330-3p 0 0 1
chr12:48830120|48830283 hsa-miR-556-5p 0 0 1
chr12:48830120|48830283 hsa-miR-324-3p 0 0 1
chr12:48830120|48830283 hsa-miR-3154 0 1 0
chr12:48830120|48830283 hsa-miR-4313 1 0 0
chr12:48830120|48830283 hsa-miR-3908 0 1 0
chr12:48830120|48830283 hsa-miR-4538 0 1 0
chr12:48830120|48830283 hsa-miR-6069 1 0 0
chr12:48830120|48830283 hsa-miR-6081 1 1 0
chr12:48830120|48830283 hsa-miR-6860 1 0 0
chr12:48830120|48830283 hsa-miR-7974 1 0 0
chr12:48830120|48830283 hsa-miR-8075 0 1 0
chr12:48830120|48830283 hsa-miR-8089 0 1 0
chr12:48830120|48830283 hsa-miR-6747-3p 0 1 0
chr12:48830120|48830283 hsa-miR-6836-3p 0 1 0
chr12:48830120|48830283 hsa-miR-6089 1 0 0
chr12:48830120|48830283 hsa-miR-4733-5p 0 1 0
chr12:48830120|48830283 hsa-miR-4640-5p 1 1 0
chr12:48830120|48830283 hsa-miR-7113-3p 0 1 0
chr12:48830120|48830283 hsa-miR-6739-3p 0 1 0
chr12:48830120|48830283 hsa-miR-103b 0 1 0
chr12:48830120|48830283 hsa-miR-6867-3p 0 1 0
chr12:48830120|48830283 hsa-miR-10400-5p 1 0 0
chr12:48830120|48830283 hsa-miR-1343-5p 0 1 0
chr12:48830120|48830283 hsa-miR-4632-5p 0 1 0
chr12:48830120|48830283 hsa-miR-6735-5p 0 1 0
chr12:48830120|48830283 hsa-miR-7843-5p 0 1 0
chr12:48830120|48830283 hsa-miR-4667-5p 0 1 0
chr12:48830120|48830283 hsa-miR-3085-3p 0 1 0
chr12:48830120|48830283 hsa-miR-10527-5p 0 1 0
chr12:48830120|48830283 hsa-miR-4720-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:48830120|48830283
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPFFALGLHWAISSCQAMGAASWHCSPD
Nucleotide Sequence CTGCCCTTCTTTGCTTTGGGATTGCACTGGGCCATCAGCTCATGCCAGGCTATGGGGGCAGCCAGTTGGCATTGCTCCCCAGACTGA
CircID chr12:48830120|48830283
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MSEAGRANYHSFLAQFCPSLLWDCTGPSAHARLWGQPVGIAPQTEQKPGRRMG
Nucleotide Sequence CTGTCGGAGGCAGGGAGAGCAAATTACCACAGCTTCTTGGCCCAGTTCTGCCCTTCTTTGCTTTGGGATTGCACTGGGCCATCAGCTCATGCCAGGCTATGGGGGCAGCCAGTTGGCATTGCTCCCCAGACTGAACAGAAACCTGGCCGCCGGATGGGA
CircID chr12:48830120|48830283
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MGHQLMPGYGGSQLALLPRLNRNLAAGWD
Nucleotide Sequence CTGGGCCATCAGCTCATGCCAGGCTATGGGGGCAGCCAGTTGGCATTGCTCCCCAGACTGAACAGAAACCTGGCCGCCGGATGGGAC
CircID chr12:48830120|48830283
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MAAPIAWHELMAQCNPKAKKGRTGPRSCGNLLSLPPTA
Nucleotide Sequence CTGGCTGCCCCCATAGCCTGGCATGAGCTGATGGCCCAGTGCAATCCCAAAGCAAAGAAGGGCAGAACTGGGCCAAGAAGCTGTGGTAATTTGCTCTCCCTGCCTCCGACAGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab