CircRNA Information

General Information
circRNA Basic Information
CircID chr12:48938421|48938619
Strand -
CircType exon
Host Gene ENSG00000134287.8;
Algorism CIRI2;
Sequence CCCCTCCCCGCTCCCCCCGGCCCCCACAAATATATCTCTCTATACATGTATATACAGGCGCACACATGCACGCAAACACAGAGAGGCCCGTGCAATTTCCATGTAAAACAGGGAGAGGGTGGCAAAGGAAAGGCAAACAGGGAGTAGAAGGGCTTGTGGGGACAGGGAAAGGACTCAGATGCCAAGAGGACAGCAACCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:48938421|48938619 hsa-miR-25-5p 0 0 1
chr12:48938421|48938619 hsa-miR-25-3p 0 0 1
chr12:48938421|48938619 hsa-miR-32-5p 0 0 1
chr12:48938421|48938619 hsa-miR-32-3p 0 0 1
chr12:48938421|48938619 hsa-miR-363-5p 0 0 1
chr12:48938421|48938619 hsa-miR-363-3p 0 0 1
chr12:48938421|48938619 hsa-miR-367-5p 0 0 1
chr12:48938421|48938619 hsa-miR-367-3p 0 0 1
chr12:48938421|48938619 hsa-miR-517-5p 0 0 1
chr12:48938421|48938619 hsa-miR-517b-3p 0 0 1
chr12:48938421|48938619 hsa-miR-92b-5p 0 0 1
chr12:48938421|48938619 hsa-miR-92b-3p 0 0 1
chr12:48938421|48938619 hsa-miR-626 0 0 1
chr12:48938421|48938619 hsa-miR-933 0 0 1
chr12:48938421|48938619 hsa-miR-939-5p 0 0 1
chr12:48938421|48938619 hsa-miR-939-3p 0 0 1
chr12:48938421|48938619 hsa-miR-491-5p 0 0 1
chr12:48938421|48938619 hsa-miR-339-5p 1 0 1
chr12:48938421|48938619 hsa-miR-1274a 0 0 1
chr12:48938421|48938619 hsa-miR-1274b 0 0 1
chr12:48938421|48938619 hsa-miR-129-3p 0 0 1
chr12:48938421|48938619 hsa-miR-92a 0 0 1
chr12:48938421|48938619 hsa-miR-637 1 0 0
chr12:48938421|48938619 hsa-miR-762 1 0 0
chr12:48938421|48938619 hsa-miR-920 1 0 0
chr12:48938421|48938619 hsa-miR-297 1 0 0
chr12:48938421|48938619 hsa-miR-1913 1 0 0
chr12:48938421|48938619 hsa-miR-718 1 0 0
chr12:48938421|48938619 hsa-miR-2861 1 0 0
chr12:48938421|48938619 hsa-miR-3132 1 0 0
chr12:48938421|48938619 hsa-miR-3195 1 0 0
chr12:48938421|48938619 hsa-miR-4322 1 0 0
chr12:48938421|48938619 hsa-miR-3615 1 0 0
chr12:48938421|48938619 hsa-miR-3621 1 0 0
chr12:48938421|48938619 hsa-miR-3652 1 0 0
chr12:48938421|48938619 hsa-miR-3909 1 0 0
chr12:48938421|48938619 hsa-miR-4430 1 0 0
chr12:48938421|48938619 hsa-miR-4447 1 0 0
chr12:48938421|48938619 hsa-miR-4488 1 0 0
chr12:48938421|48938619 hsa-miR-4492 1 0 0
chr12:48938421|48938619 hsa-miR-4498 1 0 0
chr12:48938421|48938619 hsa-miR-4505 1 0 0
chr12:48938421|48938619 hsa-miR-4508 1 0 0
chr12:48938421|48938619 hsa-miR-1587 1 0 0
chr12:48938421|48938619 hsa-miR-3972 1 0 0
chr12:48938421|48938619 hsa-miR-4642 1 0 0
chr12:48938421|48938619 hsa-miR-4651 1 0 0
chr12:48938421|48938619 hsa-miR-4656 1 0 0
chr12:48938421|48938619 hsa-miR-5739 1 0 0
chr12:48938421|48938619 hsa-miR-5787 1 0 0
chr12:48938421|48938619 hsa-miR-6085 1 0 0
chr12:48938421|48938619 hsa-miR-6088 1 0 0
chr12:48938421|48938619 hsa-miR-7704 1 0 0
chr12:48938421|48938619 hsa-miR-10226 1 0 0
chr12:48938421|48938619 hsa-miR-12121 1 0 0
chr12:48938421|48938619 hsa-miR-128-1-5p 1 0 0
chr12:48938421|48938619 hsa-miR-3194-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6879-3p 1 0 0
chr12:48938421|48938619 hsa-miR-1233-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6089 1 0 0
chr12:48938421|48938619 hsa-miR-1225-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6721-5p 1 0 0
chr12:48938421|48938619 hsa-miR-197-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6873-3p 1 0 0
chr12:48938421|48938619 hsa-miR-1915-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6832-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6742-5p 1 0 0
chr12:48938421|48938619 hsa-miR-3151-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6796-5p 1 0 0
chr12:48938421|48938619 hsa-miR-877-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6728-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4436b-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6835-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4640-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4715-3p 1 0 0
chr12:48938421|48938619 hsa-miR-7113-3p 1 0 0
chr12:48938421|48938619 hsa-miR-3667-3p 1 0 0
chr12:48938421|48938619 hsa-miR-7111-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4743-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6830-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4446-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4446-3p 1 0 0
chr12:48938421|48938619 hsa-miR-202-3p 1 0 0
chr12:48938421|48938619 hsa-miR-3162-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4640-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6781-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6877-5p 1 0 0
chr12:48938421|48938619 hsa-miR-5010-5p 1 0 0
chr12:48938421|48938619 hsa-miR-211-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4776-3p 1 0 0
chr12:48938421|48938619 hsa-miR-1237-3p 1 0 0
chr12:48938421|48938619 hsa-miR-1236-3p 1 0 0
chr12:48938421|48938619 hsa-miR-7106-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4687-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6828-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6752-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4632-3p 1 0 0
chr12:48938421|48938619 hsa-miR-1914-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6886-3p 1 0 0
chr12:48938421|48938619 hsa-miR-5088-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4649-3p 1 0 0
chr12:48938421|48938619 hsa-miR-2277-5p 1 0 0
chr12:48938421|48938619 hsa-miR-204-5p 1 0 0
chr12:48938421|48938619 hsa-miR-1227-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6748-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6851-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6779-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6734-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6846-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6812-3p 1 0 0
chr12:48938421|48938619 hsa-miR-1249-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6780b-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6731-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4763-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6787-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6816-5p 1 0 0
chr12:48938421|48938619 hsa-miR-5001-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6726-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6756-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6803-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6813-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6842-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6751-5p 1 0 0
chr12:48938421|48938619 hsa-miR-320a-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4685-3p 1 0 0
chr12:48938421|48938619 hsa-miR-3620-5p 1 0 0
chr12:48938421|48938619 hsa-miR-1237-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6846-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6848-5p 1 0 0
chr12:48938421|48938619 hsa-miR-6845-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4665-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4472 1 0 0
chr12:48938421|48938619 hsa-miR-10398-5p 1 0 0
chr12:48938421|48938619 hsa-miR-2682-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6762-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4723-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6769b-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6744-3p 1 0 0
chr12:48938421|48938619 hsa-miR-323b-5p 1 0 0
chr12:48938421|48938619 hsa-miR-128-2-5p 1 0 0
chr12:48938421|48938619 hsa-miR-4769-3p 1 0 0
chr12:48938421|48938619 hsa-miR-6766-3p 1 0 0
chr12:48938421|48938619 hsa-miR-4699-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:48938421|48938619
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MYIQAHTCTQTQRGPCNFHVKQGEGGKGKANRE
Nucleotide Sequence ATGTATATACAGGCGCACACATGCACGCAAACACAGAGAGGCCCGTGCAATTTCCATGTAAAACAGGGAGAGGGTGGCAAAGGAAAGGCAAACAGGGAGTAG
CircID chr12:48938421|48938619
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MHANTERPVQFPCKTGRGWQRKGKQGVEGLVGTGKGLRCQEDSN
Nucleotide Sequence ATGCACGCAAACACAGAGAGGCCCGTGCAATTTCCATGTAAAACAGGGAGAGGGTGGCAAAGGAAAGGCAAACAGGGAGTAGAAGGGCTTGTGGGGACAGGGAAAGGACTCAGATGCCAAGAGGACAGCAAC
CircID chr12:48938421|48938619
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MLSSWHLSPFPVPTSPSTPCLPFLCHPLPVLHGNCTGLSVFACMCAPVYTCIERYICGGRGERGG
Nucleotide Sequence TTGCTGTCCTCTTGGCATCTGAGTCCTTTCCCTGTCCCCACAAGCCCTTCTACTCCCTGTTTGCCTTTCCTTTGCCACCCTCTCCCTGTTTTACATGGAAATTGCACGGGCCTCTCTGTGTTTGCGTGCATGTGTGCGCCTGTATATACATGTATAGAGAGATATATTTGTGGGGGCCGGGGGGAGCGGGGAGGG
CircID chr12:48938421|48938619
ORF Type ORF4
Protein Length 41
Nucleotide Length 126
Protein Sequence MSPQALLLPVCLSFATLSLFYMEIARASLCLRACVRLYIHV
Nucleotide Sequence CTGTCCCCACAAGCCCTTCTACTCCCTGTTTGCCTTTCCTTTGCCACCCTCTCCCTGTTTTACATGGAAATTGCACGGGCCTCTCTGTGTTTGCGTGCATGTGTGCGCCTGTATATACATGTATAG
CircID chr12:48938421|48938619
ORF Type ORF5
Protein Length 61
Nucleotide Length 183
Protein Sequence MASESFPCPHKPFYSLFAFPLPPSPCFTWKLHGPLCVCVHVCACIYMYREIYLWGPGGAGR
Nucleotide Sequence TTGGCATCTGAGTCCTTTCCCTGTCCCCACAAGCCCTTCTACTCCCTGTTTGCCTTTCCTTTGCCACCCTCTCCCTGTTTTACATGGAAATTGCACGGGCCTCTCTGTGTTTGCGTGCATGTGTGCGCCTGTATATACATGTATAGAGAGATATATTTGTGGGGGCCGGGGGGAGCGGGGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab