CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49002840|49003161
Strand +
CircType exon
Host Gene ENSG00000181929.10;
Algorism CIRI2;
Sequence AGGCTAGTGGAAGCAGAGGTAGGGAGGCCAGCAACCCTAAAGGAGCTGAGGGGAGCAGCCTTGAGAGTGGGGTTTGGCAAGGAGAGTAGGGGCAGAGGGGCTTCCCCTGAGGCCAGCACTAAACATTCCCTTTCTCCCTTGTTGCTCTGTGCCAGGTTCACCGACTTGTAGTGGTGGATGAAAATGATGTGGTCAAGGGAATTGTATCACTGTCTGACATCCTGCAGGCCCTGGTGCTCACAGGTGGAGAGAAGAAGCCCTGAGCTGGGGGAAGGGGTCATGCAGCACCAGGGGATATGCCCAACTCACTGCCTGCTGGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49002840|49003161 hsa-miR-29a-5p 0 0 1
chr12:49002840|49003161 hsa-miR-29a-3p 0 0 1
chr12:49002840|49003161 hsa-miR-34a-5p 0 0 1
chr12:49002840|49003161 hsa-miR-34a-3p 0 0 1
chr12:49002840|49003161 hsa-miR-204-5p 0 0 1
chr12:49002840|49003161 hsa-miR-204-3p 0 0 1
chr12:49002840|49003161 hsa-miR-211-5p 0 0 1
chr12:49002840|49003161 hsa-miR-211-3p 0 0 1
chr12:49002840|49003161 hsa-miR-214-5p 0 0 1
chr12:49002840|49003161 hsa-miR-214-3p 0 0 1
chr12:49002840|49003161 hsa-miR-206 0 0 1
chr12:49002840|49003161 hsa-miR-29c-5p 0 0 1
chr12:49002840|49003161 hsa-miR-29c-3p 0 0 1
chr12:49002840|49003161 hsa-miR-449a 0 0 1
chr12:49002840|49003161 hsa-miR-520f-5p 0 0 1
chr12:49002840|49003161 hsa-miR-520f-3p 0 0 1
chr12:49002840|49003161 hsa-miR-571 0 1 1
chr12:49002840|49003161 hsa-miR-613 0 0 1
chr12:49002840|49003161 hsa-miR-623 0 0 1
chr12:49002840|49003161 hsa-miR-449b-5p 0 0 1
chr12:49002840|49003161 hsa-miR-449b-3p 0 0 1
chr12:49002840|49003161 hsa-miR-942-5p 0 0 1
chr12:49002840|49003161 hsa-miR-942-3p 0 0 1
chr12:49002840|49003161 hsa-miR-1205 0 0 1
chr12:49002840|49003161 hsa-miR-1286 0 0 1
chr12:49002840|49003161 hsa-miR-1265 0 1 1
chr12:49002840|49003161 hsa-miR-1266-5p 0 0 1
chr12:49002840|49003161 hsa-miR-1266-3p 0 0 1
chr12:49002840|49003161 hsa-miR-513c-5p 0 0 1
chr12:49002840|49003161 hsa-miR-513c-3p 0 0 1
chr12:49002840|49003161 hsa-miR-1324 0 0 1
chr12:49002840|49003161 hsa-miR-671-5p 0 0 1
chr12:49002840|49003161 hsa-miR-512-3p 0 1 1
chr12:49002840|49003161 hsa-miR-296-3p 0 1 1
chr12:49002840|49003161 hsa-miR-490-3p 0 0 1
chr12:49002840|49003161 hsa-miR-361-3p 0 1 1
chr12:49002840|49003161 hsa-miR-502-5p 0 0 1
chr12:49002840|49003161 hsa-miR-331-3p 0 0 1
chr12:49002840|49003161 hsa-miR-338-3p 1 0 1
chr12:49002840|49003161 hsa-miR-324-3p 0 0 1
chr12:49002840|49003161 hsa-miR-34c-5p 0 1 1
chr12:49002840|49003161 hsa-miR-516a-3p 0 0 1
chr12:49002840|49003161 hsa-miR-1 0 0 1
chr12:49002840|49003161 hsa-miR-219-1-3p 0 0 1
chr12:49002840|49003161 hsa-miR-29b 0 0 1
chr12:49002840|49003161 hsa-miR-637 1 0 0
chr12:49002840|49003161 hsa-miR-665 1 0 0
chr12:49002840|49003161 hsa-miR-1260a 1 0 0
chr12:49002840|49003161 hsa-miR-1913 1 1 0
chr12:49002840|49003161 hsa-miR-3174 0 1 0
chr12:49002840|49003161 hsa-miR-3176 0 1 0
chr12:49002840|49003161 hsa-miR-4267 0 1 0
chr12:49002840|49003161 hsa-miR-3918 1 1 0
chr12:49002840|49003161 hsa-miR-3938 0 1 0
chr12:49002840|49003161 hsa-miR-4514 0 1 0
chr12:49002840|49003161 hsa-miR-4518 0 1 0
chr12:49002840|49003161 hsa-miR-4530 1 1 0
chr12:49002840|49003161 hsa-miR-4692 0 1 0
chr12:49002840|49003161 hsa-miR-4706 1 0 0
chr12:49002840|49003161 hsa-miR-4734 1 0 0
chr12:49002840|49003161 hsa-miR-4739 1 0 0
chr12:49002840|49003161 hsa-miR-8073 0 1 0
chr12:49002840|49003161 hsa-miR-103a-2-5p 0 1 0
chr12:49002840|49003161 hsa-miR-6836-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6720-5p 1 0 0
chr12:49002840|49003161 hsa-miR-27a-5p 1 0 0
chr12:49002840|49003161 hsa-miR-6840-5p 1 0 0
chr12:49002840|49003161 hsa-miR-6741-5p 1 0 0
chr12:49002840|49003161 hsa-miR-6762-3p 1 1 0
chr12:49002840|49003161 hsa-miR-6845-3p 0 1 0
chr12:49002840|49003161 hsa-miR-6783-5p 0 1 0
chr12:49002840|49003161 hsa-miR-877-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6760-5p 0 1 0
chr12:49002840|49003161 hsa-miR-6728-3p 1 1 0
chr12:49002840|49003161 hsa-miR-6882-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6815-3p 0 1 0
chr12:49002840|49003161 hsa-miR-7109-3p 0 1 0
chr12:49002840|49003161 hsa-miR-5088-5p 1 0 0
chr12:49002840|49003161 hsa-miR-6894-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6753-5p 1 1 0
chr12:49002840|49003161 hsa-miR-3127-5p 0 1 0
chr12:49002840|49003161 hsa-miR-7113-3p 1 0 0
chr12:49002840|49003161 hsa-miR-3667-3p 1 0 0
chr12:49002840|49003161 hsa-miR-4690-5p 1 1 0
chr12:49002840|49003161 hsa-miR-6878-3p 0 1 0
chr12:49002840|49003161 hsa-miR-6780a-3p 0 1 0
chr12:49002840|49003161 hsa-miR-4667-3p 1 0 0
chr12:49002840|49003161 hsa-miR-4733-3p 0 1 0
chr12:49002840|49003161 hsa-miR-6878-5p 0 1 0
chr12:49002840|49003161 hsa-miR-6769a-3p 1 1 0
chr12:49002840|49003161 hsa-miR-7112-5p 1 0 0
chr12:49002840|49003161 hsa-miR-4707-5p 1 0 0
chr12:49002840|49003161 hsa-miR-1236-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6743-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6889-3p 1 0 0
chr12:49002840|49003161 hsa-miR-345-5p 1 0 0
chr12:49002840|49003161 hsa-miR-1180-3p 1 0 0
chr12:49002840|49003161 hsa-miR-3158-3p 1 1 0
chr12:49002840|49003161 hsa-miR-3180-5p 1 0 0
chr12:49002840|49003161 hsa-miR-6867-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6778-3p 1 1 0
chr12:49002840|49003161 hsa-miR-2276-5p 0 1 0
chr12:49002840|49003161 hsa-miR-6872-3p 1 0 0
chr12:49002840|49003161 hsa-miR-4632-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6882-5p 0 1 0
chr12:49002840|49003161 hsa-miR-6826-3p 1 1 0
chr12:49002840|49003161 hsa-miR-5088-3p 1 0 0
chr12:49002840|49003161 hsa-miR-4749-3p 0 1 0
chr12:49002840|49003161 hsa-miR-328-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6795-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6501-3p 0 1 0
chr12:49002840|49003161 hsa-miR-6777-3p 0 1 0
chr12:49002840|49003161 hsa-miR-6883-3p 1 0 0
chr12:49002840|49003161 hsa-miR-3173-5p 1 0 0
chr12:49002840|49003161 hsa-miR-6734-3p 1 1 0
chr12:49002840|49003161 hsa-miR-6846-3p 1 1 0
chr12:49002840|49003161 hsa-miR-4639-3p 0 1 0
chr12:49002840|49003161 hsa-miR-6890-3p 1 0 0
chr12:49002840|49003161 hsa-miR-3162-3p 1 1 0
chr12:49002840|49003161 hsa-miR-4677-3p 0 1 0
chr12:49002840|49003161 hsa-miR-4650-5p 1 0 0
chr12:49002840|49003161 hsa-miR-3127-3p 0 1 0
chr12:49002840|49003161 hsa-miR-4685-3p 1 0 0
chr12:49002840|49003161 hsa-miR-449c-5p 0 1 0
chr12:49002840|49003161 hsa-miR-4685-5p 1 1 0
chr12:49002840|49003161 hsa-miR-6511b-5p 1 1 0
chr12:49002840|49003161 hsa-miR-6756-3p 1 1 0
chr12:49002840|49003161 hsa-miR-6801-3p 1 0 0
chr12:49002840|49003161 hsa-miR-6810-3p 1 1 0
chr12:49002840|49003161 hsa-miR-6837-5p 1 1 0
chr12:49002840|49003161 hsa-miR-4723-3p 0 1 0
chr12:49002840|49003161 hsa-miR-6744-3p 1 0 0
chr12:49002840|49003161 hsa-miR-10394-5p 0 1 0
chr12:49002840|49003161 hsa-miR-3619-5p 1 1 0
chr12:49002840|49003161 hsa-miR-6797-3p 1 1 0
chr12:49002840|49003161 hsa-miR-103a-1-5p 0 1 0
chr12:49002840|49003161 hsa-miR-2682-5p 0 1 0
chr12:49002840|49003161 hsa-miR-6843-3p 1 1 0
chr12:49002840|49003161 hsa-miR-412-3p 0 1 0
chr12:49002840|49003161 hsa-miR-3922-3p 0 1 0
chr12:49002840|49003161 hsa-miR-3121-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:49002840|49003161
ORF Type ORF1
Protein Length 41
Nucleotide Length 126
Protein Sequence MRGAALRVGFGKESRGRGASPEASTKHSLSPLLLCARFTDL
Nucleotide Sequence CTGAGGGGAGCAGCCTTGAGAGTGGGGTTTGGCAAGGAGAGTAGGGGCAGAGGGGCTTCCCCTGAGGCCAGCACTAAACATTCCCTTTCTCCCTTGTTGCTCTGTGCCAGGTTCACCGACTTGTAG
CircID chr12:49002840|49003161
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MKMMWSRELYHCLTSCRPWCSQVERRSPELGEGVMQHQGICPTHCLLE
Nucleotide Sequence ATGAAAATGATGTGGTCAAGGGAATTGTATCACTGTCTGACATCCTGCAGGCCCTGGTGCTCACAGGTGGAGAGAAGAAGCCCTGAGCTGGGGGAAGGGGTCATGCAGCACCAGGGGATATGCCCAACTCACTGCCTGCTGGAA
CircID chr12:49002840|49003161
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MARRVGAEGLPLRPALNIPFLPCCSVPGSPTCSGG
Nucleotide Sequence TTGGCAAGGAGAGTAGGGGCAGAGGGGCTTCCCCTGAGGCCAGCACTAAACATTCCCTTTCTCCCTTGTTGCTCTGTGCCAGGTTCACCGACTTGTAGTGGTGGATGA
CircID chr12:49002840|49003161
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MCQVHRLVVVDENDVVKGIVSLSDILQALVLTGGEKKP
Nucleotide Sequence CTGTGCCAGGTTCACCGACTTGTAGTGGTGGATGAAAATGATGTGGTCAAGGGAATTGTATCACTGTCTGACATCCTGCAGGCCCTGGTGCTCACAGGTGGAGAGAAGAAGCCCTGA
CircID chr12:49002840|49003161
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MFSAGLRGSPSAPTLLAKPHSQGCSPQLL
Nucleotide Sequence ATGTTTAGTGCTGGCCTCAGGGGAAGCCCCTCTGCCCCTACTCTCCTTGCCAAACCCCACTCTCAAGGCTGCTCCCCTCAGCTCCTTTAG
CircID chr12:49002840|49003161
ORF Type ORF6
Protein Length 51
Nucleotide Length 153
Protein Sequence MAQSNKGERECLVLASGEAPLPLLSLPNPTLKAAPLSSFRVAGLPTSASTS
Nucleotide Sequence CTGGCACAGAGCAACAAGGGAGAAAGGGAATGTTTAGTGCTGGCCTCAGGGGAAGCCCCTCTGCCCCTACTCTCCTTGCCAAACCCCACTCTCAAGGCTGCTCCCCTCAGCTCCTTTAGGGTTGCTGGCCTCCCTACCTCTGCTTCCACTAGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab