CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49022590|49022793
Strand -
CircType exon
Host Gene ENSG00000167548.13;
Algorism CIRI2;
Sequence CTGCTCTTCGTAGATTTTCTCCCGCCGGTTGGCCACCTCGTTCCGAATGATGGTGCCAATGTACTCGATAACCATTGTGTGCTTTTCTAGGTCCTTGGCTGCATAGAGCCCCAGGCCCTGGATACGGGAGCGAGCCAGGTACACGTTGTTCTTCCATTCGGTGCGCAGCCGCCGGTACTGAGATGACTTGGAGTGCACAAACTG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49022590|49022793 hsa-miR-96-5p 0 0 1
chr12:49022590|49022793 hsa-miR-96-3p 0 0 1
chr12:49022590|49022793 hsa-miR-149-5p 0 0 1
chr12:49022590|49022793 hsa-miR-149-3p 0 0 1
chr12:49022590|49022793 hsa-miR-604 0 0 1
chr12:49022590|49022793 hsa-miR-619-5p 0 0 1
chr12:49022590|49022793 hsa-miR-619-3p 0 0 1
chr12:49022590|49022793 hsa-miR-661 0 1 1
chr12:49022590|49022793 hsa-miR-1271-5p 0 0 1
chr12:49022590|49022793 hsa-miR-1271-3p 0 0 1
chr12:49022590|49022793 hsa-miR-1298-5p 0 0 1
chr12:49022590|49022793 hsa-miR-1298-3p 0 0 1
chr12:49022590|49022793 hsa-miR-767-5p 0 0 1
chr12:49022590|49022793 hsa-miR-7 0 0 1
chr12:49022590|49022793 hsa-miR-768-3p 0 0 1
chr12:49022590|49022793 hsa-miR-762 1 0 0
chr12:49022590|49022793 hsa-miR-3170 0 1 0
chr12:49022590|49022793 hsa-miR-3916 1 0 0
chr12:49022590|49022793 hsa-miR-3937 1 0 0
chr12:49022590|49022793 hsa-miR-4739 1 0 0
chr12:49022590|49022793 hsa-miR-5739 1 0 0
chr12:49022590|49022793 hsa-miR-6068 1 0 0
chr12:49022590|49022793 hsa-miR-7703 0 1 0
chr12:49022590|49022793 hsa-miR-8085 1 0 0
chr12:49022590|49022793 hsa-miR-9899 1 0 0
chr12:49022590|49022793 hsa-miR-12133 0 1 0
chr12:49022590|49022793 hsa-miR-224-5p 0 1 0
chr12:49022590|49022793 hsa-miR-6746-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6762-3p 1 0 0
chr12:49022590|49022793 hsa-miR-101-5p 0 1 0
chr12:49022590|49022793 hsa-miR-7108-5p 0 1 0
chr12:49022590|49022793 hsa-miR-6732-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6760-5p 1 0 0
chr12:49022590|49022793 hsa-miR-4633-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6786-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6852-5p 1 1 0
chr12:49022590|49022793 hsa-miR-7109-5p 1 0 0
chr12:49022590|49022793 hsa-miR-1909-5p 1 0 0
chr12:49022590|49022793 hsa-miR-1908-5p 1 0 0
chr12:49022590|49022793 hsa-miR-4783-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6749-5p 1 0 0
chr12:49022590|49022793 hsa-miR-7156-3p 0 1 0
chr12:49022590|49022793 hsa-miR-6878-5p 1 1 0
chr12:49022590|49022793 hsa-miR-5189-3p 0 1 0
chr12:49022590|49022793 hsa-miR-4763-3p 1 0 0
chr12:49022590|49022793 hsa-miR-6769b-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6778-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6787-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6865-5p 0 1 0
chr12:49022590|49022793 hsa-miR-6815-5p 0 1 0
chr12:49022590|49022793 hsa-miR-1249-5p 1 0 0
chr12:49022590|49022793 hsa-miR-6788-5p 0 1 0
chr12:49022590|49022793 hsa-miR-10396b-5p 1 0 0
chr12:49022590|49022793 hsa-miR-4685-5p 1 1 0
chr12:49022590|49022793 hsa-miR-6766-5p 1 0 0
chr12:49022590|49022793 hsa-miR-9851-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:49022590|49022793
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence LLFVDFLPPVGHLVPNDGANVLDNHCVLF
Nucleotide Sequence CTGCTCTTCGTAGATTTTCTCCCGCCGGTTGGCCACCTCGTTCCGAATGATGGTGCCAATGTACTCGATAACCATTGTGTGCTTTTCTAG
CircID chr12:49022590|49022793
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MATSFRMMVPMYSITIVCFSRSLAA
Nucleotide Sequence TTGGCCACCTCGTTCCGAATGATGGTGCCAATGTACTCGATAACCATTGTGTGCTTTTCTAGGTCCTTGGCTGCATAG
CircID chr12:49022590|49022793
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MCAFLGPWLHRAPGPGYGSEPGTRCSSIRCAAAGTEMTWSAQT
Nucleotide Sequence TTGTGTGCTTTTCTAGGTCCTTGGCTGCATAGAGCCCCAGGCCCTGGATACGGGAGCGAGCCAGGTACACGTTGTTCTTCCATTCGGTGCGCAGCCGCCGGTACTGAGATGACTTGGAGTGCACAAACT
CircID chr12:49022590|49022793
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MRTEWKNNVYLARSRIQGLGLYAAKDLEKHTMVIEYIGTIIRNEVANRREKIYEEQ
Nucleotide Sequence CTGCGCACCGAATGGAAGAACAACGTGTACCTGGCTCGCTCCCGTATCCAGGGCCTGGGGCTCTATGCAGCCAAGGACCTAGAAAAGCACACAATGGTTATCGAGTACATTGGCACCATCATTCGGAACGAGGTGGCCAACCGGCGGGAGAAAATCTACGAAGAGCAG
CircID chr12:49022590|49022793
ORF Type ORF5
Protein Length 37
Nucleotide Length 114
Protein Sequence MCTPSHLSTGGCAPNGRTTCTWLAPVSRAWGSMQPRT
Nucleotide Sequence TTGTGCACTCCAAGTCATCTCAGTACCGGCGGCTGCGCACCGAATGGAAGAACAACGTGTACCTGGCTCGCTCCCGTATCCAGGGCCTGGGGCTCTATGCAGCCAAGGACCTAG
CircID chr12:49022590|49022793
ORF Type ORF6
Protein Length 52
Nucleotide Length 156
Protein Sequence MEEQRVPGSLPYPGPGALCSQGPRKAHNGYRVHWHHHSERGGQPAGENLRRA
Nucleotide Sequence ATGGAAGAACAACGTGTACCTGGCTCGCTCCCGTATCCAGGGCCTGGGGCTCTATGCAGCCAAGGACCTAGAAAAGCACACAATGGTTATCGAGTACATTGGCACCATCATTCGGAACGAGGTGGCCAACCGGCGGGAGAAAATCTACGAAGAGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab