CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49026723|49026940
Strand -
CircType exon
Host Gene ENSG00000167548.13;
Algorism CIRI2;
Sequence CTCCACATTCATCAGTGCCCCGCCCTGGGTCTCATACACCTCCGTGGACCAAAGGGCACAGTTGAGGTGCACCCACAGGTCCAGGTCCAGGTTCAGCAGACGGGCAGGCCCATCAGTGGCCCCGTCACCCTCCTCATGACAGAAACAGCAGCGACGCATGTCTCGCGGTACCTTGTCAGGTCGCAAGGCTGTGCCAAGCTGCTCCATAAACTCTGCCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49026723|49026940 hsa-miR-96-5p 0 0 1
chr12:49026723|49026940 hsa-miR-96-3p 0 0 1
chr12:49026723|49026940 hsa-miR-133b 0 0 1
chr12:49026723|49026940 hsa-miR-492 0 1 1
chr12:49026723|49026940 hsa-miR-619-5p 0 0 1
chr12:49026723|49026940 hsa-miR-619-3p 0 0 1
chr12:49026723|49026940 hsa-miR-624-5p 0 0 1
chr12:49026723|49026940 hsa-miR-624-3p 0 0 1
chr12:49026723|49026940 hsa-miR-631 0 0 1
chr12:49026723|49026940 hsa-miR-639 0 1 1
chr12:49026723|49026940 hsa-miR-646 0 0 1
chr12:49026723|49026940 hsa-miR-1271-5p 0 0 1
chr12:49026723|49026940 hsa-miR-1271-3p 0 0 1
chr12:49026723|49026940 hsa-miR-744-5p 0 0 1
chr12:49026723|49026940 hsa-miR-744-3p 0 0 1
chr12:49026723|49026940 hsa-miR-938 0 0 1
chr12:49026723|49026940 hsa-miR-769-5p 0 0 1
chr12:49026723|49026940 hsa-miR-490-3p 0 0 1
chr12:49026723|49026940 hsa-miR-9 0 0 1
chr12:49026723|49026940 hsa-miR-663 0 0 1
chr12:49026723|49026940 hsa-miR-133a 0 0 1
chr12:49026723|49026940 hsa-miR-663a 1 1 0
chr12:49026723|49026940 hsa-miR-760 1 0 0
chr12:49026723|49026940 hsa-miR-1268a 1 0 0
chr12:49026723|49026940 hsa-miR-2861 1 1 0
chr12:49026723|49026940 hsa-miR-3141 1 0 0
chr12:49026723|49026940 hsa-miR-3147 1 0 0
chr12:49026723|49026940 hsa-miR-1268b 1 0 0
chr12:49026723|49026940 hsa-miR-4449 1 0 0
chr12:49026723|49026940 hsa-miR-4492 1 0 0
chr12:49026723|49026940 hsa-miR-4508 1 0 0
chr12:49026723|49026940 hsa-miR-4535 0 1 0
chr12:49026723|49026940 hsa-miR-4538 0 1 0
chr12:49026723|49026940 hsa-miR-4539 1 0 0
chr12:49026723|49026940 hsa-miR-4651 1 0 0
chr12:49026723|49026940 hsa-miR-4663 1 0 0
chr12:49026723|49026940 hsa-miR-4689 1 1 0
chr12:49026723|49026940 hsa-miR-4706 1 0 0
chr12:49026723|49026940 hsa-miR-5090 1 1 0
chr12:49026723|49026940 hsa-miR-5787 1 0 0
chr12:49026723|49026940 hsa-miR-6075 1 0 0
chr12:49026723|49026940 hsa-miR-6081 1 0 0
chr12:49026723|49026940 hsa-miR-9-5p 0 1 0
chr12:49026723|49026940 hsa-miR-134-3p 0 1 0
chr12:49026723|49026940 hsa-miR-93-3p 0 1 0
chr12:49026723|49026940 hsa-miR-6765-5p 1 0 0
chr12:49026723|49026940 hsa-miR-4687-3p 1 0 0
chr12:49026723|49026940 hsa-miR-6799-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6727-5p 1 0 0
chr12:49026723|49026940 hsa-miR-181a-2-3p 0 1 0
chr12:49026723|49026940 hsa-miR-6787-3p 0 1 0
chr12:49026723|49026940 hsa-miR-3151-5p 1 0 0
chr12:49026723|49026940 hsa-miR-659-3p 0 1 0
chr12:49026723|49026940 hsa-miR-6732-5p 1 0 0
chr12:49026723|49026940 hsa-miR-486-3p 0 1 0
chr12:49026723|49026940 hsa-miR-5008-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6786-5p 1 0 0
chr12:49026723|49026940 hsa-miR-4738-3p 1 0 0
chr12:49026723|49026940 hsa-miR-4763-5p 0 1 0
chr12:49026723|49026940 hsa-miR-4640-5p 1 0 0
chr12:49026723|49026940 hsa-miR-1908-5p 0 1 0
chr12:49026723|49026940 hsa-miR-1228-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6771-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6749-5p 1 0 0
chr12:49026723|49026940 hsa-miR-4787-5p 1 0 0
chr12:49026723|49026940 hsa-miR-149-3p 1 0 0
chr12:49026723|49026940 hsa-miR-7152-3p 1 0 0
chr12:49026723|49026940 hsa-miR-6889-3p 0 1 0
chr12:49026723|49026940 hsa-miR-4750-5p 1 0 0
chr12:49026723|49026940 hsa-miR-4763-3p 1 0 0
chr12:49026723|49026940 hsa-miR-6816-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6775-5p 1 1 0
chr12:49026723|49026940 hsa-miR-6752-5p 1 1 0
chr12:49026723|49026940 hsa-miR-6756-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6803-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6851-5p 0 1 0
chr12:49026723|49026940 hsa-miR-1249-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6797-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6879-5p 1 0 0
chr12:49026723|49026940 hsa-miR-7111-5p 1 0 0
chr12:49026723|49026940 hsa-miR-1915-3p 1 1 0
chr12:49026723|49026940 hsa-miR-3620-5p 1 0 0
chr12:49026723|49026940 hsa-miR-5189-5p 1 0 0
chr12:49026723|49026940 hsa-miR-5196-5p 1 0 0
chr12:49026723|49026940 hsa-miR-10396a-5p 1 0 0
chr12:49026723|49026940 hsa-miR-10396b-5p 1 1 0
chr12:49026723|49026940 hsa-miR-1237-5p 1 0 0
chr12:49026723|49026940 hsa-miR-4685-5p 1 1 0
chr12:49026723|49026940 hsa-miR-6858-5p 1 1 0
chr12:49026723|49026940 hsa-miR-4697-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6885-5p 1 0 0
chr12:49026723|49026940 hsa-miR-10394-3p 1 0 0
chr12:49026723|49026940 hsa-miR-1199-5p 1 0 0
chr12:49026723|49026940 hsa-miR-4665-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6891-5p 1 0 0
chr12:49026723|49026940 hsa-miR-6762-5p 1 1 0
chr12:49026723|49026940 hsa-miR-6529-3p 0 1 0
chr12:49026723|49026940 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:49026723|49026940
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MGLIHLRGPKGTVEVHPQVQVQVQQTGRPISGPVTLLMTETAATHVSRYLVRSQGCAKLLHKLC
Nucleotide Sequence CTGGGTCTCATACACCTCCGTGGACCAAAGGGCACAGTTGAGGTGCACCCACAGGTCCAGGTCCAGGTTCAGCAGACGGGCAGGCCCATCAGTGGCCCCGTCACCCTCCTCATGACAGAAACAGCAGCGACGCATGTCTCGCGGTACCTTGTCAGGTCGCAAGGCTGTGCCAAGCTGCTCCATAAACTCTGC
CircID chr12:49026723|49026940
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MRCTHRSRSRFSRRAGPSVAPSPSS
Nucleotide Sequence TTGAGGTGCACCCACAGGTCCAGGTCCAGGTTCAGCAGACGGGCAGGCCCATCAGTGGCCCCGTCACCCTCCTCATGA
CircID chr12:49026723|49026940
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MAQPCDLTRYRETCVAAVSVMRRVTGPLMGLPVC
Nucleotide Sequence TTGGCACAGCCTTGCGACCTGACAAGGTACCGCGAGACATGCGTCGCTGCTGTTTCTGTCATGAGGAGGGTGACGGGGCCACTGATGGGCCTGCCCGTCTGCTGA
CircID chr12:49026723|49026940
ORF Type ORF4
Protein Length 69
Nucleotide Length 207
Protein Sequence MEQLGTALRPDKVPRDMRRCCFCHEEGDGATDGPARLLNLDLDLWVHLNCALWSTEVYETQGGALMNVE
Nucleotide Sequence ATGGAGCAGCTTGGCACAGCCTTGCGACCTGACAAGGTACCGCGAGACATGCGTCGCTGCTGTTTCTGTCATGAGGAGGGTGACGGGGCCACTGATGGGCCTGCCCGTCTGCTGAACCTGGACCTGGACCTGTGGGTGCACCTCAACTGTGCCCTTTGGTCCACGGAGGTGTATGAGACCCAGGGCGGGGCACTGATGAATGTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab