CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49033227|49033427
Strand -
CircType exon
Host Gene ENSG00000167548.13;
Algorism CIRI2;
Sequence CTGTCTGTGAGGGCCCTGGGGGCCCAAAGCTCCAGGGTGCTGCTGCTGCAACACAGCCACCTGGGCAGGGCCCAGCATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGGAGGCCTTGGTGGCTGCTGGGAGGCATAAGGCCCTGGGGCTTGGGACCCAGAGCTTGGTTTGTCTGTACTCCAGGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49033227|49033427 hsa-miR-15a-5p 0 0 1
chr12:49033227|49033427 hsa-miR-15a-3p 0 0 1
chr12:49033227|49033427 hsa-miR-107 0 0 1
chr12:49033227|49033427 hsa-miR-15b-5p 0 0 1
chr12:49033227|49033427 hsa-miR-15b-3p 0 0 1
chr12:49033227|49033427 hsa-miR-195-5p 0 0 1
chr12:49033227|49033427 hsa-miR-195-3p 0 0 1
chr12:49033227|49033427 hsa-miR-326 0 1 1
chr12:49033227|49033427 hsa-miR-424-5p 0 0 1
chr12:49033227|49033427 hsa-miR-424-3p 0 0 1
chr12:49033227|49033427 hsa-miR-497-5p 0 0 1
chr12:49033227|49033427 hsa-miR-497-3p 0 0 1
chr12:49033227|49033427 hsa-miR-646 0 1 1
chr12:49033227|49033427 hsa-miR-1301-5p 0 0 1
chr12:49033227|49033427 hsa-miR-1301-3p 0 0 1
chr12:49033227|49033427 hsa-miR-1291 0 0 1
chr12:49033227|49033427 hsa-miR-1324 0 0 1
chr12:49033227|49033427 hsa-miR-296-5p 0 1 1
chr12:49033227|49033427 hsa-miR-361-3p 0 0 1
chr12:49033227|49033427 hsa-miR-532-5p 0 0 1
chr12:49033227|49033427 hsa-miR-338-3p 0 0 1
chr12:49033227|49033427 hsa-miR-330-5p 0 1 1
chr12:49033227|49033427 hsa-miR-103 0 0 1
chr12:49033227|49033427 hsa-miR-16 0 0 1
chr12:49033227|49033427 hsa-miR-665 1 0 0
chr12:49033227|49033427 hsa-miR-4308 0 1 0
chr12:49033227|49033427 hsa-miR-4323 0 1 0
chr12:49033227|49033427 hsa-miR-4254 0 1 0
chr12:49033227|49033427 hsa-miR-3918 0 1 0
chr12:49033227|49033427 hsa-miR-4512 0 1 0
chr12:49033227|49033427 hsa-miR-7974 0 1 0
chr12:49033227|49033427 hsa-miR-6836-3p 0 1 0
chr12:49033227|49033427 hsa-miR-874-5p 0 1 0
chr12:49033227|49033427 hsa-miR-4761-3p 0 1 0
chr12:49033227|49033427 hsa-miR-615-3p 1 0 0
chr12:49033227|49033427 hsa-miR-6852-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6763-3p 1 0 0
chr12:49033227|49033427 hsa-miR-6789-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6776-3p 0 1 0
chr12:49033227|49033427 hsa-miR-3065-3p 0 1 0
chr12:49033227|49033427 hsa-miR-3922-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6778-3p 0 1 0
chr12:49033227|49033427 hsa-miR-6871-3p 0 1 0
chr12:49033227|49033427 hsa-miR-1915-3p 0 1 0
chr12:49033227|49033427 hsa-miR-6836-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6862-5p 0 1 0
chr12:49033227|49033427 hsa-miR-4685-5p 0 1 0
chr12:49033227|49033427 hsa-miR-10396b-3p 1 0 0
chr12:49033227|49033427 hsa-miR-6799-3p 0 1 0
chr12:49033227|49033427 hsa-miR-6773-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6791-3p 0 1 0
chr12:49033227|49033427 hsa-miR-3184-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6724-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6837-5p 0 1 0
chr12:49033227|49033427 hsa-miR-6775-3p 0 1 0
chr12:49033227|49033427 hsa-miR-6764-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:49033227|49033427
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence LSVRALGAQSSRVLLLQHSHLGRAQHALGPLGWLRGQLLDQEALVAAGRHKALGLGTQSLVCLYSRT
Nucleotide Sequence CTGTCTGTGAGGGCCCTGGGGGCCCAAAGCTCCAGGGTGCTGCTGCTGCAACACAGCCACCTGGGCAGGGCCCAGCATGCCCTGGGGCCCCTGGGGTGGTTGAGGGGACAGCTGCTGGACCAGGAGGCCTTGGTGGCTGCTGGGAGGCATAAGGCCCTGGGGCTTGGGACCCAGAGCTTGGTTTGTCTGTACTCCAGGACC
CircID chr12:49033227|49033427
ORF Type ORF2
Protein Length 58
Nucleotide Length 174
Protein Sequence MGPKPQGLMPPSSHQGLLVQQLSPQPPQGPQGMLGPAQVAVLQQQHPGALGPQGPHRQ
Nucleotide Sequence CTGGGTCCCAAGCCCCAGGGCCTTATGCCTCCCAGCAGCCACCAAGGCCTCCTGGTCCAGCAGCTGTCCCCTCAACCACCCCAGGGGCCCCAGGGCATGCTGGGCCCTGCCCAGGTGGCTGTGTTGCAGCAGCAGCACCCTGGAGCTTTGGGCCCCCAGGGCCCTCACAGACAG
CircID chr12:49033227|49033427
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MEYRQTKLWVPSPRALCLPAATKASWSSSCPLNHPRGPRACWALPRWLCCSSSTLELWAPRALTD
Nucleotide Sequence CTGGAGTACAGACAAACCAAGCTCTGGGTCCCAAGCCCCAGGGCCTTATGCCTCCCAGCAGCCACCAAGGCCTCCTGGTCCAGCAGCTGTCCCCTCAACCACCCCAGGGGCCCCAGGGCATGCTGGGCCCTGCCCAGGTGGCTGTGTTGCAGCAGCAGCACCCTGGAGCTTTGGGCCCCCAGGGCCCTCACAGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab