CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49038092|49038295
Strand -
CircType exon
Host Gene ENSG00000167548.13;
Algorism CIRI2;
Sequence CCCCCGCAGCAGGGCCTCCCGTTCAGCCTTCTCATTAGCCGATTCTACCAGCCTCAGGTGCTCATTGAAGATATCCTTCTTGTCCCCAGTGTCCAGCTCAGGATCAGTATATGCCAGCAGGTCAAACTCGTCTCCATTGAGCAGGTCATCCAAGTGGGGGTCATTGGTCTCCAGGTTTTCTAAGGTGCCAAGTTCATCATCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49038092|49038295 hsa-miR-96-5p 0 0 1
chr12:49038092|49038295 hsa-miR-96-3p 0 0 1
chr12:49038092|49038295 hsa-miR-192-5p 0 0 1
chr12:49038092|49038295 hsa-miR-192-3p 0 0 1
chr12:49038092|49038295 hsa-miR-215-5p 0 0 1
chr12:49038092|49038295 hsa-miR-215-3p 0 0 1
chr12:49038092|49038295 hsa-miR-370-5p 0 0 1
chr12:49038092|49038295 hsa-miR-370-3p 0 0 1
chr12:49038092|49038295 hsa-miR-379-5p 0 0 1
chr12:49038092|49038295 hsa-miR-379-3p 0 0 1
chr12:49038092|49038295 hsa-miR-558 0 0 1
chr12:49038092|49038295 hsa-miR-619-5p 0 0 1
chr12:49038092|49038295 hsa-miR-619-3p 0 0 1
chr12:49038092|49038295 hsa-miR-631 0 0 1
chr12:49038092|49038295 hsa-miR-1271-5p 0 0 1
chr12:49038092|49038295 hsa-miR-1271-3p 0 0 1
chr12:49038092|49038295 hsa-miR-890 0 0 1
chr12:49038092|49038295 hsa-miR-744-5p 0 0 1
chr12:49038092|49038295 hsa-miR-744-3p 0 0 1
chr12:49038092|49038295 hsa-miR-887-5p 0 0 1
chr12:49038092|49038295 hsa-miR-887-3p 0 0 1
chr12:49038092|49038295 hsa-miR-1200 0 0 1
chr12:49038092|49038295 hsa-miR-1291 0 0 1
chr12:49038092|49038295 hsa-miR-1253 0 0 1
chr12:49038092|49038295 hsa-miR-1255a 0 0 1
chr12:49038092|49038295 hsa-miR-1272 0 1 1
chr12:49038092|49038295 hsa-miR-485-5p 0 0 1
chr12:49038092|49038295 hsa-miR-490-3p 0 1 1
chr12:49038092|49038295 hsa-miR-767-3p 0 0 1
chr12:49038092|49038295 hsa-miR-1255b 0 0 1
chr12:49038092|49038295 hsa-miR-1300 0 0 1
chr12:49038092|49038295 hsa-miR-492 1 0 0
chr12:49038092|49038295 hsa-miR-612 1 0 0
chr12:49038092|49038295 hsa-miR-762 1 0 0
chr12:49038092|49038295 hsa-miR-3122 1 0 0
chr12:49038092|49038295 hsa-miR-544b 0 1 0
chr12:49038092|49038295 hsa-miR-3188 1 0 0
chr12:49038092|49038295 hsa-miR-4254 0 1 0
chr12:49038092|49038295 hsa-miR-3610 1 0 0
chr12:49038092|49038295 hsa-miR-4478 0 1 0
chr12:49038092|49038295 hsa-miR-4492 1 0 0
chr12:49038092|49038295 hsa-miR-4498 1 0 0
chr12:49038092|49038295 hsa-miR-4502 1 0 0
chr12:49038092|49038295 hsa-miR-4505 1 0 0
chr12:49038092|49038295 hsa-miR-2392 1 0 0
chr12:49038092|49038295 hsa-miR-1587 1 0 0
chr12:49038092|49038295 hsa-miR-4656 1 1 0
chr12:49038092|49038295 hsa-miR-4689 1 0 0
chr12:49038092|49038295 hsa-miR-4785 1 0 0
chr12:49038092|49038295 hsa-miR-5091 1 0 0
chr12:49038092|49038295 hsa-miR-5787 1 0 0
chr12:49038092|49038295 hsa-miR-6069 1 0 0
chr12:49038092|49038295 hsa-miR-6085 1 0 0
chr12:49038092|49038295 hsa-miR-6086 1 0 0
chr12:49038092|49038295 hsa-miR-6125 1 0 0
chr12:49038092|49038295 hsa-miR-8075 1 0 0
chr12:49038092|49038295 hsa-miR-8089 1 1 0
chr12:49038092|49038295 hsa-miR-12119 1 0 0
chr12:49038092|49038295 hsa-miR-12126 1 0 0
chr12:49038092|49038295 hsa-miR-12133 0 1 0
chr12:49038092|49038295 hsa-miR-138-5p 1 0 0
chr12:49038092|49038295 hsa-miR-92a-1-5p 1 0 0
chr12:49038092|49038295 hsa-miR-6765-5p 1 0 0
chr12:49038092|49038295 hsa-miR-3150a-3p 1 0 0
chr12:49038092|49038295 hsa-miR-4687-3p 1 0 0
chr12:49038092|49038295 hsa-miR-6728-5p 1 0 0
chr12:49038092|49038295 hsa-miR-3692-5p 1 1 0
chr12:49038092|49038295 hsa-miR-766-5p 1 0 0
chr12:49038092|49038295 hsa-miR-139-3p 1 1 0
chr12:49038092|49038295 hsa-miR-6089 1 0 0
chr12:49038092|49038295 hsa-miR-3192-5p 1 0 0
chr12:49038092|49038295 hsa-miR-6727-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4474-3p 1 0 0
chr12:49038092|49038295 hsa-miR-8069 1 0 0
chr12:49038092|49038295 hsa-miR-6770-5p 0 1 0
chr12:49038092|49038295 hsa-miR-6810-5p 1 1 0
chr12:49038092|49038295 hsa-miR-204-3p 1 0 0
chr12:49038092|49038295 hsa-miR-1229-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4640-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4650-3p 1 0 0
chr12:49038092|49038295 hsa-miR-3614-5p 0 1 0
chr12:49038092|49038295 hsa-miR-92b-5p 1 0 0
chr12:49038092|49038295 hsa-miR-6877-5p 1 0 0
chr12:49038092|49038295 hsa-miR-6720-3p 1 0 0
chr12:49038092|49038295 hsa-miR-6859-3p 0 1 0
chr12:49038092|49038295 hsa-miR-6816-5p 1 0 0
chr12:49038092|49038295 hsa-miR-5001-5p 1 1 0
chr12:49038092|49038295 hsa-miR-6803-5p 1 0 0
chr12:49038092|49038295 hsa-miR-6813-5p 1 0 0
chr12:49038092|49038295 hsa-miR-3620-5p 1 0 0
chr12:49038092|49038295 hsa-miR-5189-5p 1 0 0
chr12:49038092|49038295 hsa-miR-5196-5p 1 0 0
chr12:49038092|49038295 hsa-miR-6780b-5p 1 0 0
chr12:49038092|49038295 hsa-miR-328-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4685-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4725-3p 1 0 0
chr12:49038092|49038295 hsa-miR-6848-5p 1 0 0
chr12:49038092|49038295 hsa-miR-6858-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4758-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4665-5p 1 0 0
chr12:49038092|49038295 hsa-miR-4700-5p 1 1 0
chr12:49038092|49038295 hsa-miR-4667-5p 1 1 0
chr12:49038092|49038295 hsa-miR-6791-5p 1 0 0
chr12:49038092|49038295 hsa-miR-9851-5p 0 1 0
chr12:49038092|49038295 hsa-miR-6884-5p 1 1 0
chr12:49038092|49038295 hsa-miR-5588-5p 0 1 0
chr12:49038092|49038295 hsa-miR-4720-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:49038092|49038295
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MKISFLSPVSSSGSVYASRSNSSPLSRSSKWGSLVSRFSKVPSSSS
Nucleotide Sequence TTGAAGATATCCTTCTTGTCCCCAGTGTCCAGCTCAGGATCAGTATATGCCAGCAGGTCAAACTCGTCTCCATTGAGCAGGTCATCCAAGTGGGGGTCATTGGTCTCCAGGTTTTCTAAGGTGCCAAGTTCATCATCA
CircID chr12:49038092|49038295
ORF Type ORF2
Protein Length 58
Nucleotide Length 174
Protein Sequence METNDPHLDDLLNGDEFDLLAYTDPELDTGDKKDIFNEHLRLVESANEKAEREALLRG
Nucleotide Sequence CTGGAGACCAATGACCCCCACTTGGATGACCTGCTCAATGGAGACGAGTTTGACCTGCTGGCATATACTGATCCTGAGCTGGACACTGGGGACAAGAAGGATATCTTCAATGAGCACCTGAGGCTGGTAGAATCGGCTAATGAGAAGGCTGAACGGGAGGCCCTGCTGCGGGGG
CircID chr12:49038092|49038295
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MTPTWMTCSMETSLTCWHILILSWTLGTRRISSMST
Nucleotide Sequence ATGACCCCCACTTGGATGACCTGCTCAATGGAGACGAGTTTGACCTGCTGGCATATACTGATCCTGAGCTGGACACTGGGGACAAGAAGGATATCTTCAATGAGCACCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab