CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49039222|49039529
Strand -
CircType exon
Host Gene ENSG00000167548.13;
Algorism CIRI2;
Sequence CGGCTGTTCACATCCATAGAGGAAGGCGTGGCTGGTGGAGGTGGCCGGGAGAGTCGGTCATCGCTAGGGAAGGACCCTGGCCCCAGGATGGGGCCACTCAGCTTGCTTGGGGGCAACCCCACAAGGCTGCTCTTGTCCTAGAAGAGACAAGGTAGATGAAGGTGGAGCAACCTTCAATATCCTGGCCCCACTATCCCTTGCCACTCTACCTACCTGTGTCCCAGCAAAGGGGGTCTGGCCTCGACTCAGCTGCTCAAAGGCAGGGCTGCTGGGCTCAGCACCCCAGCTGCCTGGAGGCCCCACTGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49039222|49039529 hsa-miR-31-5p 0 0 1
chr12:49039222|49039529 hsa-miR-31-3p 0 0 1
chr12:49039222|49039529 hsa-miR-205-5p 0 0 1
chr12:49039222|49039529 hsa-miR-205-3p 0 0 1
chr12:49039222|49039529 hsa-miR-335-5p 0 0 1
chr12:49039222|49039529 hsa-miR-335-3p 0 0 1
chr12:49039222|49039529 hsa-miR-196b-5p 0 0 1
chr12:49039222|49039529 hsa-miR-196b-3p 0 0 1
chr12:49039222|49039529 hsa-miR-493-5p 0 0 1
chr12:49039222|49039529 hsa-miR-493-3p 0 0 1
chr12:49039222|49039529 hsa-miR-593-5p 0 0 1
chr12:49039222|49039529 hsa-miR-593-3p 0 0 1
chr12:49039222|49039529 hsa-miR-608 -8 0 1
chr12:49039222|49039529 hsa-miR-646 -8 1 1
chr12:49039222|49039529 hsa-miR-1226-5p 0 0 1
chr12:49039222|49039529 hsa-miR-1226-3p 0 0 1
chr12:49039222|49039529 hsa-miR-1236-5p 0 0 1
chr12:49039222|49039529 hsa-miR-1236-3p 0 0 1
chr12:49039222|49039529 hsa-miR-663b -1 0 1
chr12:49039222|49039529 hsa-miR-1246 0 0 1
chr12:49039222|49039529 hsa-miR-1197 -8 0 1
chr12:49039222|49039529 hsa-miR-1225-3p -14 0 1
chr12:49039222|49039529 hsa-miR-491-5p -8 0 1
chr12:49039222|49039529 hsa-miR-1207-3p 0 0 1
chr12:49039222|49039529 hsa-miR-342-5p -3 0 1
chr12:49039222|49039529 hsa-miR-1302 -7 0 1
chr12:49039222|49039529 hsa-miR-1233 0 0 1
chr12:49039222|49039529 hsa-miR-196a 0 0 1
chr12:49039222|49039529 hsa-miR-2278 -3 1 0
chr12:49039222|49039529 hsa-miR-4297 -8 1 0
chr12:49039222|49039529 hsa-miR-4298 -18 1 0
chr12:49039222|49039529 hsa-miR-4514 -7 1 0
chr12:49039222|49039529 hsa-miR-3977 -4 1 0
chr12:49039222|49039529 hsa-miR-4663 -8 1 0
chr12:49039222|49039529 hsa-miR-4673 -5 1 0
chr12:49039222|49039529 hsa-miR-4692 -3 1 0
chr12:49039222|49039529 hsa-miR-5787 -15 1 0
chr12:49039222|49039529 hsa-miR-8055 -6 1 0
chr12:49039222|49039529 hsa-miR-8077 -13 1 0
chr12:49039222|49039529 hsa-miR-7155-5p -9 1 0
chr12:49039222|49039529 hsa-miR-219a-1-3p -12 1 0
chr12:49039222|49039529 hsa-miR-1227-5p -14 1 0
chr12:49039222|49039529 hsa-miR-6757-5p -23 1 0
chr12:49039222|49039529 hsa-miR-874-5p -5 1 0
chr12:49039222|49039529 hsa-miR-3189-5p -7 1 0
chr12:49039222|49039529 hsa-miR-6742-5p -13 1 0
chr12:49039222|49039529 hsa-miR-3151-5p -15 1 0
chr12:49039222|49039529 hsa-miR-6796-5p -14 1 0
chr12:49039222|49039529 hsa-miR-656-5p -2 1 0
chr12:49039222|49039529 hsa-miR-1343-3p -12 1 0
chr12:49039222|49039529 hsa-miR-6852-5p -3 1 0
chr12:49039222|49039529 hsa-miR-4793-5p -2 1 0
chr12:49039222|49039529 hsa-miR-1229-5p -17 1 0
chr12:49039222|49039529 hsa-miR-4640-5p -10 1 0
chr12:49039222|49039529 hsa-miR-4715-3p -6 1 0
chr12:49039222|49039529 hsa-miR-3667-3p -12 1 0
chr12:49039222|49039529 hsa-miR-4640-3p -11 1 0
chr12:49039222|49039529 hsa-miR-1306-5p -7 1 0
chr12:49039222|49039529 hsa-miR-194-3p -14 1 0
chr12:49039222|49039529 hsa-miR-4727-3p -7 1 0
chr12:49039222|49039529 hsa-miR-6741-3p -10 1 0
chr12:49039222|49039529 hsa-miR-1296-3p -13 1 0
chr12:49039222|49039529 hsa-miR-3173-5p -11 1 0
chr12:49039222|49039529 hsa-miR-6779-3p -8 1 0
chr12:49039222|49039529 hsa-miR-6509-5p -14 1 0
chr12:49039222|49039529 hsa-miR-29c-5p -13 1 0
chr12:49039222|49039529 hsa-miR-6510-3p -8 1 0
chr12:49039222|49039529 hsa-miR-4763-3p -26 1 0
chr12:49039222|49039529 hsa-miR-6737-5p -8 1 0
chr12:49039222|49039529 hsa-miR-6819-5p -9 1 0
chr12:49039222|49039529 hsa-miR-6754-3p -9 1 0
chr12:49039222|49039529 hsa-miR-4726-5p -9 1 0
chr12:49039222|49039529 hsa-miR-4745-5p -21 1 0
chr12:49039222|49039529 hsa-miR-6831-5p -21 1 0
chr12:49039222|49039529 hsa-miR-6845-5p -10 1 0
chr12:49039222|49039529 hsa-miR-1238-5p 3 1 0
chr12:49039222|49039529 hsa-miR-4758-5p -3 1 0
chr12:49039222|49039529 hsa-miR-1199-5p -10 1 0
chr12:49039222|49039529 hsa-miR-4664-5p -9 1 0
chr12:49039222|49039529 hsa-miR-6762-5p -14 1 0
chr12:49039222|49039529 hsa-miR-4659b-3p -11 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:49039222|49039529
ORF Type ORF1
Protein Length 45
Nucleotide Length 138
Protein Sequence MFTSIEEGVAGGGGRESRSSLGKDPGPRMGPLSLLGGNPTRLLLS
Nucleotide Sequence CTGTTCACATCCATAGAGGAAGGCGTGGCTGGTGGAGGTGGCCGGGAGAGTCGGTCATCGCTAGGGAAGGACCCTGGCCCCAGGATGGGGCCACTCAGCTTGCTTGGGGGCAACCCCACAAGGCTGCTCTTGTCCTAG
CircID chr12:49039222|49039529
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MCPSKGGLASTQLLKGRAAGLSTPAAWRPHC
Nucleotide Sequence CTGTGTCCCAGCAAAGGGGGTCTGGCCTCGACTCAGCTGCTCAAAGGCAGGGCTGCTGGGCTCAGCACCCCAGCTGCCTGGAGGCCCCACTGC
CircID chr12:49039222|49039529
ORF Type ORF3
Protein Length 77
Nucleotide Length 231
Protein Sequence MAPGWGHSACLGATPQGCSCPRRDKVDEGGATFNILAPLSLATLPTCVPAKGVWPRLSCSKAGLLGSAPQLPGGPTA
Nucleotide Sequence CTGGCCCCAGGATGGGGCCACTCAGCTTGCTTGGGGGCAACCCCACAAGGCTGCTCTTGTCCTAGAAGAGACAAGGTAGATGAAGGTGGAGCAACCTTCAATATCCTGGCCCCACTATCCCTTGCCACTCTACCTACCTGTGTCCCAGCAAAGGGGGTCTGGCCTCGACTCAGCTGCTCAAAGGCAGGGCTGCTGGGCTCAGCACCCCAGCTGCCTGGAGGCCCCACTGCT
CircID chr12:49039222|49039529
ORF Type ORF4
Protein Length 51
Nucleotide Length 153
Protein Sequence MKVEQPSISWPHYPLPLYLPVSQQRGSGLDSAAQRQGCWAQHPSCLEAPLL
Nucleotide Sequence ATGAAGGTGGAGCAACCTTCAATATCCTGGCCCCACTATCCCTTGCCACTCTACCTACCTGTGTCCCAGCAAAGGGGGTCTGGCCTCGACTCAGCTGCTCAAAGGCAGGGCTGCTGGGCTCAGCACCCCAGCTGCCTGGAGGCCCCACTGCTC
CircID chr12:49039222|49039529
ORF Type ORF5
Protein Length 38
Nucleotide Length 114
Protein Sequence MPPSKLSGPILGPGSFPSDDRLSRPPPPATPSSMDVNS
Nucleotide Sequence TTGCCCCCAAGCAAGCTGAGTGGCCCCATCCTGGGGCCAGGGTCCTTCCCTAGCGATGACCGACTCTCCCGGCCACCTCCACCAGCCACGCCTTCCTCTATGGATGTGAACAGC
CircID chr12:49039222|49039529
ORF Type ORF6
Protein Length 61
Nucleotide Length 186
Protein Sequence MSRGQTPFAGTQVGRVARDSGARILKVAPPSSTLSLLGQEQPCGVAPKQAEWPHPGARVLP
Nucleotide Sequence CTGAGTCGAGGCCAGACCCCCTTTGCTGGGACACAGGTAGGTAGAGTGGCAAGGGATAGTGGGGCCAGGATATTGAAGGTTGCTCCACCTTCATCTACCTTGTCTCTTCTAGGACAAGAGCAGCCTTGTGGGGTTGCCCCCAAGCAAGCTGAGTGGCCCCATCCTGGGGCCAGGGTCCTTCCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab