CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49526104|49526227
Strand -
CircType exon
Host Gene ENSG00000123352.16;
Algorism CIRI2;
Sequence CAGGAAACACCATTGAAAGAGGCCAGACTCACTCTGCAGGGACCAATGGAACTGGAGTCAGCATGGAGCCCAGCCCTCCCACGCCTTCATTCAAAAAGGGGCTCCCCCAGCGCAAACCCAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49526104|49526227 hsa-miR-133b 0 0 1
chr12:49526104|49526227 hsa-miR-345-5p 0 0 1
chr12:49526104|49526227 hsa-miR-345-3p 0 0 1
chr12:49526104|49526227 hsa-miR-625-5p 0 0 1
chr12:49526104|49526227 hsa-miR-625-3p 0 0 1
chr12:49526104|49526227 hsa-miR-627-5p 0 0 1
chr12:49526104|49526227 hsa-miR-627-3p 0 0 1
chr12:49526104|49526227 hsa-miR-629-5p 0 0 1
chr12:49526104|49526227 hsa-miR-629-3p 0 0 1
chr12:49526104|49526227 hsa-miR-637 1 0 1
chr12:49526104|49526227 hsa-miR-924 0 0 1
chr12:49526104|49526227 hsa-miR-939-5p 0 0 1
chr12:49526104|49526227 hsa-miR-939-3p 0 0 1
chr12:49526104|49526227 hsa-miR-1275 0 0 1
chr12:49526104|49526227 hsa-miR-1225-3p 0 0 1
chr12:49526104|49526227 hsa-miR-145-5p 0 0 1
chr12:49526104|49526227 hsa-miR-508-5p 0 0 1
chr12:49526104|49526227 hsa-miR-628-5p 0 0 1
chr12:49526104|49526227 hsa-miR-133a 0 0 1
chr12:49526104|49526227 hsa-miR-762 1 1 0
chr12:49526104|49526227 hsa-miR-1268b 1 0 0
chr12:49526104|49526227 hsa-miR-4492 0 1 0
chr12:49526104|49526227 hsa-miR-4505 0 1 0
chr12:49526104|49526227 hsa-miR-4507 1 0 0
chr12:49526104|49526227 hsa-miR-1587 1 0 0
chr12:49526104|49526227 hsa-miR-4651 1 0 0
chr12:49526104|49526227 hsa-miR-4663 1 0 0
chr12:49526104|49526227 hsa-miR-4730 1 0 0
chr12:49526104|49526227 hsa-miR-5698 1 0 0
chr12:49526104|49526227 hsa-miR-5787 1 0 0
chr12:49526104|49526227 hsa-miR-6070 1 0 0
chr12:49526104|49526227 hsa-miR-6127 1 0 0
chr12:49526104|49526227 hsa-miR-4433b-3p 1 0 0
chr12:49526104|49526227 hsa-miR-4731-5p 1 1 0
chr12:49526104|49526227 hsa-miR-671-5p 1 0 0
chr12:49526104|49526227 hsa-miR-6822-3p 1 0 0
chr12:49526104|49526227 hsa-miR-4728-3p 0 1 0
chr12:49526104|49526227 hsa-miR-6798-5p 1 0 0
chr12:49526104|49526227 hsa-miR-30b-3p 0 1 0
chr12:49526104|49526227 hsa-miR-1226-5p 0 1 0
chr12:49526104|49526227 hsa-miR-6878-3p 0 1 0
chr12:49526104|49526227 hsa-miR-4446-3p 0 1 0
chr12:49526104|49526227 hsa-miR-149-3p 1 1 0
chr12:49526104|49526227 hsa-miR-3925-3p 0 1 0
chr12:49526104|49526227 hsa-miR-3158-5p 0 1 0
chr12:49526104|49526227 hsa-miR-3678-3p 0 1 0
chr12:49526104|49526227 hsa-miR-584-3p 0 1 0
chr12:49526104|49526227 hsa-miR-1233-5p 1 1 0
chr12:49526104|49526227 hsa-miR-1273h-5p 0 1 0
chr12:49526104|49526227 hsa-miR-6778-5p 0 1 0
chr12:49526104|49526227 hsa-miR-6816-5p 1 0 0
chr12:49526104|49526227 hsa-miR-6870-5p 1 0 0
chr12:49526104|49526227 hsa-miR-5001-5p 1 1 0
chr12:49526104|49526227 hsa-miR-6803-5p 1 0 0
chr12:49526104|49526227 hsa-miR-6813-5p 1 0 0
chr12:49526104|49526227 hsa-miR-10401-5p 1 1 0
chr12:49526104|49526227 hsa-miR-6779-5p 1 1 0
chr12:49526104|49526227 hsa-miR-6797-5p 1 0 0
chr12:49526104|49526227 hsa-miR-3620-5p 1 0 0
chr12:49526104|49526227 hsa-miR-4728-5p 0 1 0
chr12:49526104|49526227 hsa-miR-328-5p 1 0 0
chr12:49526104|49526227 hsa-miR-4649-5p 1 0 0
chr12:49526104|49526227 hsa-miR-6729-5p 1 0 0
chr12:49526104|49526227 hsa-miR-6848-5p 1 0 0
chr12:49526104|49526227 hsa-miR-6883-5p 0 1 0
chr12:49526104|49526227 hsa-miR-4723-5p 1 1 0
chr12:49526104|49526227 hsa-miR-3940-5p 1 0 0
chr12:49526104|49526227 hsa-miR-6785-5p 0 1 0
chr12:49526104|49526227 hsa-miR-2682-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:49526104|49526227
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MKEARLTLQGPMELESAWSPALPRLHSKRGSPSANPG
Nucleotide Sequence TTGAAAGAGGCCAGACTCACTCTGCAGGGACCAATGGAACTGGAGTCAGCATGGAGCCCAGCCCTCCCACGCCTTCATTCAAAAAGGGGCTCCCCCAGCGCAAACCCAGGA
CircID chr12:49526104|49526227
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MGLRWGSPFLNEGVGGLGSMLTPVPLVPAE
Nucleotide Sequence CTGGGTTTGCGCTGGGGGAGCCCCTTTTTGAATGAAGGCGTGGGAGGGCTGGGCTCCATGCTGACTCCAGTTCCATTGGTCCCTGCAGAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab