CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49643879|49644004
Strand +
CircType exon
Host Gene ENSG00000110844.12;
Algorism CIRI2;
Sequence CTTCTCCTTCTTGATTCCAAAGCCTGGGGAACGGTTAGGGAGCTCTGCCTGTTGGAGCTCCCTGTCCTTGTCCTGTTCTTGTTCTTTCTCATCGCTCTCCTTGCCAGCTTTCTCCTCAGGGTCTGT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49643879|49644004 hsa-miR-31-5p 0 0 1
chr12:49643879|49644004 hsa-miR-31-3p 0 0 1
chr12:49643879|49644004 hsa-miR-320a-5p 0 0 1
chr12:49643879|49644004 hsa-miR-320a-3p 0 0 1
chr12:49643879|49644004 hsa-miR-504-5p 0 0 1
chr12:49643879|49644004 hsa-miR-504-3p 0 0 1
chr12:49643879|49644004 hsa-miR-539-5p 0 0 1
chr12:49643879|49644004 hsa-miR-539-3p 0 0 1
chr12:49643879|49644004 hsa-miR-920 0 1 1
chr12:49643879|49644004 hsa-miR-320b 1 1 1
chr12:49643879|49644004 hsa-miR-320c 1 1 1
chr12:49643879|49644004 hsa-miR-125a-5p 0 0 1
chr12:49643879|49644004 hsa-miR-320d 1 1 1
chr12:49643879|49644004 hsa-miR-125b 0 0 1
chr12:49643879|49644004 hsa-miR-451 0 0 1
chr12:49643879|49644004 hsa-miR-765 1 0 0
chr12:49643879|49644004 hsa-miR-711 1 0 0
chr12:49643879|49644004 hsa-miR-3125 1 0 0
chr12:49643879|49644004 hsa-miR-3153 1 1 0
chr12:49643879|49644004 hsa-miR-4298 1 0 0
chr12:49643879|49644004 hsa-miR-4270 1 0 0
chr12:49643879|49644004 hsa-miR-3916 1 0 0
chr12:49643879|49644004 hsa-miR-4428 1 1 0
chr12:49643879|49644004 hsa-miR-4429 1 1 0
chr12:49643879|49644004 hsa-miR-4436a 0 1 0
chr12:49643879|49644004 hsa-miR-4487 1 0 0
chr12:49643879|49644004 hsa-miR-4644 1 0 0
chr12:49643879|49644004 hsa-miR-4689 1 1 0
chr12:49643879|49644004 hsa-miR-4706 1 0 0
chr12:49643879|49644004 hsa-miR-4784 1 1 0
chr12:49643879|49644004 hsa-miR-5192 1 0 0
chr12:49643879|49644004 hsa-miR-5739 1 0 0
chr12:49643879|49644004 hsa-miR-6090 1 0 0
chr12:49643879|49644004 hsa-miR-6131 1 0 0
chr12:49643879|49644004 hsa-miR-7150 1 0 0
chr12:49643879|49644004 hsa-miR-8080 0 1 0
chr12:49643879|49644004 hsa-miR-8085 1 0 0
chr12:49643879|49644004 hsa-miR-12115 1 0 0
chr12:49643879|49644004 hsa-miR-12119 1 0 0
chr12:49643879|49644004 hsa-miR-12120 1 0 0
chr12:49643879|49644004 hsa-miR-6734-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6809-5p 1 1 0
chr12:49643879|49644004 hsa-miR-7845-5p 0 1 0
chr12:49643879|49644004 hsa-miR-6760-5p 1 0 0
chr12:49643879|49644004 hsa-miR-3667-5p 0 1 0
chr12:49643879|49644004 hsa-miR-3150b-3p 1 1 0
chr12:49643879|49644004 hsa-miR-345-3p 1 0 0
chr12:49643879|49644004 hsa-miR-1226-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6740-5p 1 0 0
chr12:49643879|49644004 hsa-miR-185-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6784-5p 1 0 0
chr12:49643879|49644004 hsa-miR-877-5p 1 0 0
chr12:49643879|49644004 hsa-miR-149-3p 1 0 0
chr12:49643879|49644004 hsa-miR-6824-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6878-5p 0 1 0
chr12:49643879|49644004 hsa-miR-7106-3p 0 1 0
chr12:49643879|49644004 hsa-miR-4773 0 1 0
chr12:49643879|49644004 hsa-miR-519d-5p 0 1 0
chr12:49643879|49644004 hsa-miR-6761-5p 1 0 0
chr12:49643879|49644004 hsa-miR-5587-3p 1 1 0
chr12:49643879|49644004 hsa-miR-1207-5p 1 1 0
chr12:49643879|49644004 hsa-miR-4763-3p 1 0 0
chr12:49643879|49644004 hsa-miR-6812-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6865-5p 1 0 0
chr12:49643879|49644004 hsa-miR-1343-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6726-5p 0 1 0
chr12:49643879|49644004 hsa-miR-6754-5p 1 1 0
chr12:49643879|49644004 hsa-miR-1249-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6763-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6808-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6780b-5p 0 1 0
chr12:49643879|49644004 hsa-miR-4649-5p 1 0 0
chr12:49643879|49644004 hsa-miR-4685-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6729-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6858-5p 1 1 0
chr12:49643879|49644004 hsa-miR-4723-5p 0 1 0
chr12:49643879|49644004 hsa-miR-6831-5p 1 0 0
chr12:49643879|49644004 hsa-miR-939-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6511a-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6739-5p 1 1 0
chr12:49643879|49644004 hsa-miR-4646-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6891-5p 1 1 0
chr12:49643879|49644004 hsa-miR-4667-5p 1 0 0
chr12:49643879|49644004 hsa-miR-6791-5p 1 0 0
chr12:49643879|49644004 hsa-miR-9851-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:49643879|49644004
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MLELPVLVLFLFFLIALLASFLLRVC
Nucleotide Sequence CTGTTGGAGCTCCCTGTCCTTGTCCTGTTCTTGTTCTTTCTCATCGCTCTCCTTGCCAGCTTTCTCCTCAGGGTCTGT
CircID chr12:49643879|49644004
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MIPKPGERLGSSACWSSLSLSCSCSFSSLSLPAFSSGS
Nucleotide Sequence TTGATTCCAAAGCCTGGGGAACGGTTAGGGAGCTCTGCCTGTTGGAGCTCCCTGTCCTTGTCCTGTTCTTGTTCTTTCTCATCGCTCTCCTTGCCAGCTTTCTCCTCAGGGTCT
CircID chr12:49643879|49644004
ORF Type ORF3
Protein Length 27
Nucleotide Length 81
Protein Sequence MPVGAPCPCPVLVLSHRSPCQLSPQGL
Nucleotide Sequence CTGCCTGTTGGAGCTCCCTGTCCTTGTCCTGTTCTTGTTCTTTCTCATCGCTCTCCTTGCCAGCTTTCTCCTCAGGGTCTG
CircID chr12:49643879|49644004
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MRRKLARRAMRKNKNRTRTGSSNRQSSLTVPQALESRRR
Nucleotide Sequence CTGAGGAGAAAGCTGGCAAGGAGAGCGATGAGAAAGAACAAGAACAGGACAAGGACAGGGAGCTCCAACAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTTGGAATCAAGAAGGAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab