CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49644187|49644399
Strand -
CircType exon
Host Gene ENSG00000110844.12;
Algorism CIRI2;
Sequence CAGTGACCCAATGAGCTGTTCTCTGCCTCGGGTCTGTGTGAGGCCATGGCTCCTGGGCCACCCTCACCGTCTGCCTCAGACTTCTTCCTTAGTCTGGTCTGTGTCCACTTTTTCTAAAGTAACCCCACCCCCAGCACACCATTGTTGGCACCTCTCAAGGTTGCTCTTGGTGTTCAAGGGTCCCCTACTCCCTGGACTAGTGCAGTCCTTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49644187|49644399 hsa-miR-377-5p 0 0 1
chr12:49644187|49644399 hsa-miR-377-3p 0 0 1
chr12:49644187|49644399 hsa-miR-335-5p 0 0 1
chr12:49644187|49644399 hsa-miR-335-3p 0 0 1
chr12:49644187|49644399 hsa-miR-554 0 0 1
chr12:49644187|49644399 hsa-miR-608 1 0 1
chr12:49644187|49644399 hsa-miR-637 1 0 1
chr12:49644187|49644399 hsa-miR-665 0 0 1
chr12:49644187|49644399 hsa-miR-663b 1 0 1
chr12:49644187|49644399 hsa-miR-1288-5p 0 0 1
chr12:49644187|49644399 hsa-miR-1288-3p 0 0 1
chr12:49644187|49644399 hsa-miR-1827 0 0 1
chr12:49644187|49644399 hsa-miR-342-3p 0 0 1
chr12:49644187|49644399 hsa-miR-762 1 0 0
chr12:49644187|49644399 hsa-miR-1202 1 0 0
chr12:49644187|49644399 hsa-miR-3131 1 0 0
chr12:49644187|49644399 hsa-miR-3138 1 0 0
chr12:49644187|49644399 hsa-miR-3170 1 0 0
chr12:49644187|49644399 hsa-miR-4270 1 0 0
chr12:49644187|49644399 hsa-miR-1268b 1 0 0
chr12:49644187|49644399 hsa-miR-4462 1 0 0
chr12:49644187|49644399 hsa-miR-4488 1 0 0
chr12:49644187|49644399 hsa-miR-4651 1 0 0
chr12:49644187|49644399 hsa-miR-5090 1 0 0
chr12:49644187|49644399 hsa-miR-5572 1 0 0
chr12:49644187|49644399 hsa-miR-5787 1 0 0
chr12:49644187|49644399 hsa-miR-8089 1 0 0
chr12:49644187|49644399 hsa-miR-12115 1 0 0
chr12:49644187|49644399 hsa-miR-12119 1 0 0
chr12:49644187|49644399 hsa-miR-4731-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6747-5p 1 0 0
chr12:49644187|49644399 hsa-miR-7106-5p 1 0 0
chr12:49644187|49644399 hsa-miR-1972 1 0 0
chr12:49644187|49644399 hsa-miR-6799-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6746-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6759-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6742-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6748-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6796-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6829-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6732-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6782-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6786-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6835-5p 1 0 0
chr12:49644187|49644399 hsa-miR-7109-5p 1 0 0
chr12:49644187|49644399 hsa-miR-4787-5p 1 0 0
chr12:49644187|49644399 hsa-miR-1207-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6769b-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6812-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6816-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6737-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6743-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6752-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6756-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6803-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6819-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6842-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6851-5p 1 0 0
chr12:49644187|49644399 hsa-miR-7110-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6751-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6779-5p 1 0 0
chr12:49644187|49644399 hsa-miR-7111-5p 1 0 0
chr12:49644187|49644399 hsa-miR-5189-5p 1 0 0
chr12:49644187|49644399 hsa-miR-1237-5p 1 0 0
chr12:49644187|49644399 hsa-miR-4745-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6889-5p 1 0 0
chr12:49644187|49644399 hsa-miR-4723-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6511a-5p 1 0 0
chr12:49644187|49644399 hsa-miR-1914-3p 1 0 0
chr12:49644187|49644399 hsa-miR-4665-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6855-5p 1 0 0
chr12:49644187|49644399 hsa-miR-3173-3p 1 0 0
chr12:49644187|49644399 hsa-miR-541-3p 1 0 0
chr12:49644187|49644399 hsa-miR-6750-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6766-5p 1 0 0
chr12:49644187|49644399 hsa-miR-6762-5p 1 0 0
chr12:49644187|49644399 hsa-miR-383-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:49644187|49644399
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MFSASGLCEAMAPGPPSPSASDFFLSLVCVHFF
Nucleotide Sequence CTGTTCTCTGCCTCGGGTCTGTGTGAGGCCATGGCTCCTGGGCCACCCTCACCGTCTGCCTCAGACTTCTTCCTTAGTCTGGTCTGTGTCCACTTTTTCTAA
CircID chr12:49644187|49644399
ORF Type ORF2
Protein Length 67
Nucleotide Length 201
Protein Sequence MSCSLPRVCVRPWLLGHPHRLPQTSSLVWSVSTFSKVTPPPAHHCWHLSRLLLVFKGPLLPGLVQSL
Nucleotide Sequence ATGAGCTGTTCTCTGCCTCGGGTCTGTGTGAGGCCATGGCTCCTGGGCCACCCTCACCGTCTGCCTCAGACTTCTTCCTTAGTCTGGTCTGTGTCCACTTTTTCTAAAGTAACCCCACCCCCAGCACACCATTGTTGGCACCTCTCAAGGTTGCTCTTGGTGTTCAAGGGTCCCCTACTCCCTGGACTAGTGCAGTCCTTG
CircID chr12:49644187|49644399
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MNTKSNLERCQQWCAGGGVTLEKVDTDQTKEEV
Nucleotide Sequence TTGAACACCAAGAGCAACCTTGAGAGGTGCCAACAATGGTGTGCTGGGGGTGGGGTTACTTTAGAAAAAGTGGACACAGACCAGACTAAGGAAGAAGTCTGA
CircID chr12:49644187|49644399
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MRQTVRVAQEPWPHTDPRQRTAHWVT
Nucleotide Sequence CTGAGGCAGACGGTGAGGGTGGCCCAGGAGCCATGGCCTCACACAGACCCGAGGCAGAGAACAGCTCATTGGGTCACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab