CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49758383|49758762
Strand +
CircType exon
Host Gene ENSG00000139644.11;
Algorism CIRI2;
Sequence CTGGAAAAGCCAAATGGATCCAAAGAAAACATTCCCCAGGGAAGACAAAAGCAACAAGCTCAGGGCTGACATCAAGATACCTATAAGACACAGCAAAAAGCTGTCTTGAGAGAAGCCAAGGCAAAGTAAAGCAATCCCATTAAAGCCATTCCTTAACTTCCCCCAGAATGAAGGTTAATCTCAACTCAATAGTCGCAAAGGAGTTAGGGGTAAGGAAGGAGTACTAGTGAGAATTCTGGCTAAAAAGGAGCCCCCATTCCCTGTTTCCCAGTTCACACTTACCTCCCAGAAAGAGGTAGCTACGGCGCCTGGCATAGAGTGCACTGAGGGTGAAGCAGGTAAAGATCATTGCCGTGCCCATGAAAGCAGTGGGAAGGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49758383|49758762 hsa-miR-148a-5p 0 0 1
chr12:49758383|49758762 hsa-miR-148a-3p 0 0 1
chr12:49758383|49758762 hsa-miR-205-5p 0 0 1
chr12:49758383|49758762 hsa-miR-205-3p 0 0 1
chr12:49758383|49758762 hsa-miR-152-5p 0 0 1
chr12:49758383|49758762 hsa-miR-152-3p 0 0 1
chr12:49758383|49758762 hsa-miR-206 0 0 1
chr12:49758383|49758762 hsa-miR-135b-5p 0 0 1
chr12:49758383|49758762 hsa-miR-135b-3p 0 0 1
chr12:49758383|49758762 hsa-miR-148b-5p 0 0 1
chr12:49758383|49758762 hsa-miR-148b-3p 0 0 1
chr12:49758383|49758762 hsa-miR-412-5p 0 0 1
chr12:49758383|49758762 hsa-miR-412-3p 0 0 1
chr12:49758383|49758762 hsa-miR-511-5p 0 0 1
chr12:49758383|49758762 hsa-miR-511-3p 0 0 1
chr12:49758383|49758762 hsa-miR-564 0 0 1
chr12:49758383|49758762 hsa-miR-571 0 0 1
chr12:49758383|49758762 hsa-miR-575 0 0 1
chr12:49758383|49758762 hsa-miR-595 0 0 1
chr12:49758383|49758762 hsa-miR-613 0 1 1
chr12:49758383|49758762 hsa-miR-625-5p 0 0 1
chr12:49758383|49758762 hsa-miR-625-3p 0 0 1
chr12:49758383|49758762 hsa-miR-637 0 0 1
chr12:49758383|49758762 hsa-miR-1298-5p 0 0 1
chr12:49758383|49758762 hsa-miR-1298-3p 0 0 1
chr12:49758383|49758762 hsa-miR-942-5p 0 0 1
chr12:49758383|49758762 hsa-miR-942-3p 0 0 1
chr12:49758383|49758762 hsa-miR-1229-5p 0 0 1
chr12:49758383|49758762 hsa-miR-1229-3p 0 0 1
chr12:49758383|49758762 hsa-miR-1275 0 0 1
chr12:49758383|49758762 hsa-miR-1278 0 0 1
chr12:49758383|49758762 hsa-miR-513c-5p 0 0 1
chr12:49758383|49758762 hsa-miR-513c-3p 0 0 1
chr12:49758383|49758762 hsa-miR-129-5p 0 0 1
chr12:49758383|49758762 hsa-miR-331-5p 0 0 1
chr12:49758383|49758762 hsa-miR-188-3p 0 0 1
chr12:49758383|49758762 hsa-miR-125a-5p 0 0 1
chr12:49758383|49758762 hsa-miR-1260 0 0 1
chr12:49758383|49758762 hsa-miR-1274a 0 0 1
chr12:49758383|49758762 hsa-miR-125b 0 0 1
chr12:49758383|49758762 hsa-miR-1308 0 0 1
chr12:49758383|49758762 hsa-miR-9 0 0 1
chr12:49758383|49758762 hsa-miR-135a 0 0 1
chr12:49758383|49758762 hsa-miR-1 0 0 1
chr12:49758383|49758762 hsa-miR-450a 0 0 1
chr12:49758383|49758762 hsa-miR-219-1-3p 0 0 1
chr12:49758383|49758762 hsa-miR-449a 0 1 0
chr12:49758383|49758762 hsa-miR-3178 1 0 0
chr12:49758383|49758762 hsa-miR-4261 0 1 0
chr12:49758383|49758762 hsa-miR-4271 0 1 0
chr12:49758383|49758762 hsa-miR-4458 0 1 0
chr12:49758383|49758762 hsa-miR-3689c 0 1 0
chr12:49758383|49758762 hsa-miR-548al 0 1 0
chr12:49758383|49758762 hsa-miR-7703 0 1 0
chr12:49758383|49758762 hsa-miR-7974 1 0 0
chr12:49758383|49758762 hsa-miR-7976 0 1 0
chr12:49758383|49758762 hsa-miR-8089 1 1 0
chr12:49758383|49758762 hsa-miR-9899 1 0 0
chr12:49758383|49758762 hsa-miR-4435 0 1 0
chr12:49758383|49758762 hsa-miR-128-1-5p 1 0 0
chr12:49758383|49758762 hsa-miR-212-5p 0 1 0
chr12:49758383|49758762 hsa-miR-3192-5p 0 1 0
chr12:49758383|49758762 hsa-miR-4653-3p 0 1 0
chr12:49758383|49758762 hsa-miR-4755-3p 0 1 0
chr12:49758383|49758762 hsa-miR-6875-3p 0 1 0
chr12:49758383|49758762 hsa-miR-6716-5p 1 1 0
chr12:49758383|49758762 hsa-miR-30b-3p 0 1 0
chr12:49758383|49758762 hsa-miR-5006-5p 0 1 0
chr12:49758383|49758762 hsa-miR-6815-3p 0 1 0
chr12:49758383|49758762 hsa-miR-204-3p 0 1 0
chr12:49758383|49758762 hsa-miR-3667-3p 0 1 0
chr12:49758383|49758762 hsa-miR-4445-5p 0 1 0
chr12:49758383|49758762 hsa-miR-6749-5p 1 0 0
chr12:49758383|49758762 hsa-miR-208a-5p 1 0 0
chr12:49758383|49758762 hsa-miR-34a-5p 0 1 0
chr12:49758383|49758762 hsa-miR-6856-3p 1 0 0
chr12:49758383|49758762 hsa-miR-6794-3p 0 1 0
chr12:49758383|49758762 hsa-miR-4524a-3p 0 1 0
chr12:49758383|49758762 hsa-miR-3177-3p 0 1 0
chr12:49758383|49758762 hsa-miR-6734-3p 0 1 0
chr12:49758383|49758762 hsa-miR-3177-5p 1 0 0
chr12:49758383|49758762 hsa-miR-1273h-5p 0 1 0
chr12:49758383|49758762 hsa-miR-3689b-3p 0 1 0
chr12:49758383|49758762 hsa-miR-6812-5p 1 0 0
chr12:49758383|49758762 hsa-miR-6775-5p 1 0 0
chr12:49758383|49758762 hsa-miR-6780a-5p 0 1 0
chr12:49758383|49758762 hsa-miR-7111-5p 1 1 0
chr12:49758383|49758762 hsa-miR-1271-3p 1 0 0
chr12:49758383|49758762 hsa-miR-4646-5p 0 1 0
chr12:49758383|49758762 hsa-miR-6790-5p 0 1 0
chr12:49758383|49758762 hsa-miR-449b-5p 0 1 0
chr12:49758383|49758762 hsa-miR-3119 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:49758383|49758762
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MDPKKTFPREDKSNKLRADIKIPIRHSKKLS
Nucleotide Sequence ATGGATCCAAAGAAAACATTCCCCAGGGAAGACAAAAGCAACAAGCTCAGGGCTGACATCAAGATACCTATAAGACACAGCAAAAAGCTGTCTTGA
CircID chr12:49758383|49758762
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MAKKEPPFPVSQFTLTSQKEVATAPGIECTEGEAGKDHCRAHESSGKD
Nucleotide Sequence CTGGCTAAAAAGGAGCCCCCATTCCCTGTTTCCCAGTTCACACTTACCTCCCAGAAAGAGGTAGCTACGGCGCCTGGCATAGAGTGCACTGAGGGTGAAGCAGGTAAAGATCATTGCCGTGCCCATGAAAGCAGTGGGAAGGAT
CircID chr12:49758383|49758762
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MGTAMIFTCFTLSALYARRRSYLFLGGKCELGNREWGLLFSQNSH
Nucleotide Sequence ATGGGCACGGCAATGATCTTTACCTGCTTCACCCTCAGTGCACTCTATGCCAGGCGCCGTAGCTACCTCTTTCTGGGAGGTAAGTGTGAACTGGGAAACAGGGAATGGGGGCTCCTTTTTAGCCAGAATTCTCACTAG
CircID chr12:49758383|49758762
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MPWLLSRQLFAVSYRYLDVSPELVAFVFPGECFLWIHLAFP
Nucleotide Sequence TTGCCTTGGCTTCTCTCAAGACAGCTTTTTGCTGTGTCTTATAGGTATCTTGATGTCAGCCCTGAGCTTGTTGCTTTTGTCTTCCCTGGGGAATGTTTTCTTTGGATCCATTTGGCTTTTCCA
CircID chr12:49758383|49758762
ORF Type ORF5
Protein Length 44
Nucleotide Length 135
Protein Sequence MPGAVATSFWEVSVNWETGNGGSFLARILTSTPSLPLTPLRLLS
Nucleotide Sequence ATGCCAGGCGCCGTAGCTACCTCTTTCTGGGAGGTAAGTGTGAACTGGGAAACAGGGAATGGGGGCTCCTTTTTAGCCAGAATTCTCACTAGTACTCCTTCCTTACCCCTAACTCCTTTGCGACTATTGAGTTGA
CircID chr12:49758383|49758762
ORF Type ORF6
Protein Length 32
Nucleotide Length 96
Protein Sequence MLCLIGILMSALSLLLLSSLGNVFFGSIWLFQ
Nucleotide Sequence TTGCTGTGTCTTATAGGTATCTTGATGTCAGCCCTGAGCTTGTTGCTTTTGTCTTCCCTGGGGAATGTTTTCTTTGGATCCATTTGGCTTTTCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab