CircRNA Information

General Information
circRNA Basic Information
CircID chr12:49762968|49763227
Strand -
CircType exon
Host Gene ENSG00000139644.11;
Algorism CIRI2;
Sequence AGGTGGTGTGTTCTGTGATAATGAAAAGCATCAGAAAAGCTTTTGTACTTTGTGGTTTCCTCTATTTTGAATTTTTTGATCAAAAAACTGATTAGCAGAATATAGTTTGGAGTTTGGCTTCATCTTCCTGGGGTTCCCCTCACTCCCTTTTTTGTCAACCCCATCTGTAGCCTCTTCCTCTACTCAGGCAGTCGACCCGCCACGATGAGAAGTGGGACCAGCAGAGGGCGCCAACTTCAGGAGTCCGCTTTCCCACCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:49762968|49763227 hsa-miR-563 0 0 1
chr12:49762968|49763227 hsa-miR-541-5p 0 0 1
chr12:49762968|49763227 hsa-miR-541-3p 0 0 1
chr12:49762968|49763227 hsa-miR-877-5p 0 0 1
chr12:49762968|49763227 hsa-miR-877-3p 0 0 1
chr12:49762968|49763227 hsa-miR-1204 0 0 1
chr12:49762968|49763227 hsa-miR-548k 0 0 1
chr12:49762968|49763227 hsa-miR-129-5p 0 0 1
chr12:49762968|49763227 hsa-miR-423-5p 0 0 1
chr12:49762968|49763227 hsa-miR-654-5p 0 0 1
chr12:49762968|49763227 hsa-miR-566 0 0 1
chr12:49762968|49763227 hsa-miR-362-3p 0 0 1
chr12:49762968|49763227 hsa-miR-220b 0 0 1
chr12:49762968|49763227 hsa-miR-138 0 0 1
chr12:49762968|49763227 hsa-miR-329 0 0 1
chr12:49762968|49763227 hsa-miR-1201 0 0 1
chr12:49762968|49763227 hsa-miR-1826 0 0 1
chr12:49762968|49763227 hsa-miR-663 0 0 1
chr12:49762968|49763227 hsa-miR-665 0 1 0
chr12:49762968|49763227 hsa-miR-921 1 0 0
chr12:49762968|49763227 hsa-miR-3125 1 1 0
chr12:49762968|49763227 hsa-miR-3132 1 1 0
chr12:49762968|49763227 hsa-miR-3153 0 1 0
chr12:49762968|49763227 hsa-miR-3188 1 0 0
chr12:49762968|49763227 hsa-miR-4270 1 1 0
chr12:49762968|49763227 hsa-miR-4271 1 0 0
chr12:49762968|49763227 hsa-miR-3621 1 1 0
chr12:49762968|49763227 hsa-miR-3916 1 1 0
chr12:49762968|49763227 hsa-miR-2392 1 0 0
chr12:49762968|49763227 hsa-miR-4739 1 0 0
chr12:49762968|49763227 hsa-miR-6077 0 1 0
chr12:49762968|49763227 hsa-miR-6085 1 0 0
chr12:49762968|49763227 hsa-miR-6090 1 0 0
chr12:49762968|49763227 hsa-miR-6127 1 1 0
chr12:49762968|49763227 hsa-miR-8085 1 1 0
chr12:49762968|49763227 hsa-miR-6734-5p 1 1 0
chr12:49762968|49763227 hsa-miR-6765-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6861-5p 1 0 0
chr12:49762968|49763227 hsa-miR-125a-3p 1 0 0
chr12:49762968|49763227 hsa-miR-3692-5p 0 1 0
chr12:49762968|49763227 hsa-miR-1236-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6757-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6873-5p 1 1 0
chr12:49762968|49763227 hsa-miR-7847-3p 1 0 0
chr12:49762968|49763227 hsa-miR-6890-5p 0 1 0
chr12:49762968|49763227 hsa-miR-4474-3p 1 0 0
chr12:49762968|49763227 hsa-miR-197-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6742-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6786-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6772-3p 1 0 0
chr12:49762968|49763227 hsa-miR-1283 0 1 0
chr12:49762968|49763227 hsa-miR-4786-3p 0 1 0
chr12:49762968|49763227 hsa-miR-652-5p 0 1 0
chr12:49762968|49763227 hsa-miR-4787-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6824-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6869-5p 0 1 0
chr12:49762968|49763227 hsa-miR-6789-3p 0 1 0
chr12:49762968|49763227 hsa-miR-6769b-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6787-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6812-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6752-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6769a-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6803-5p 1 0 0
chr12:49762968|49763227 hsa-miR-7110-5p 1 0 0
chr12:49762968|49763227 hsa-miR-1249-5p 1 0 0
chr12:49762968|49763227 hsa-miR-5196-5p 1 0 0
chr12:49762968|49763227 hsa-miR-10526-3p 0 1 0
chr12:49762968|49763227 hsa-miR-4745-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6795-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6858-5p 1 0 0
chr12:49762968|49763227 hsa-miR-6889-5p 1 0 0
chr12:49762968|49763227 hsa-miR-3184-5p 1 0 0
chr12:49762968|49763227 hsa-miR-550a-3-5p 1 0 0
chr12:49762968|49763227 hsa-miR-550a-5p 1 1 0
chr12:49762968|49763227 hsa-miR-6859-5p 0 1 0
chr12:49762968|49763227 hsa-miR-6733-5p 0 1 0
chr12:49762968|49763227 hsa-miR-518a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:49762968|49763227
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MEFGFIFLGFPSLPFLSTPSVASSSTQAVDPPR
Nucleotide Sequence TTGGAGTTTGGCTTCATCTTCCTGGGGTTCCCCTCACTCCCTTTTTTGTCAACCCCATCTGTAGCCTCTTCCTCTACTCAGGCAGTCGACCCGCCACGATGA
CircID chr12:49762968|49763227
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MLISFLIKKFKIEETTKYKSFSDAFHYHRTHH
Nucleotide Sequence CTGCTAATCAGTTTTTTGATCAAAAAATTCAAAATAGAGGAAACCACAAAGTACAAAAGCTTTTCTGATGCTTTTCATTATCACAGAACACACCAC
CircID chr12:49762968|49763227
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence LVGKRTPEVGALCWSHFSSWRVDCLSRGRGYRWG
Nucleotide Sequence CTGGTGGGAAAGCGGACTCCTGAAGTTGGCGCCCTCTGCTGGTCCCACTTCTCATCGTGGCGGGTCGACTGCCTGAGTAGAGGAAGAGGCTACAGATGGGGTTGA
CircID chr12:49762968|49763227
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MKPNSKLYSANQFFDQKIQNRGNHKVQKLF
Nucleotide Sequence ATGAAGCCAAACTCCAAACTATATTCTGCTAATCAGTTTTTTGATCAAAAAATTCAAAATAGAGGAAACCACAAAGTACAAAAGCTTTTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab