CircRNA Information

General Information
circRNA Basic Information
CircID chr12:51053430|51053744
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCAAATAAGTTGTTAATACAATAGACAATCCATCCACCCCACTGTACAGTAAACTTCTATTACAGCCCAGAAAAAGGACCAAATTTCTTTCTTTTTCTTTTTGAGATGGAGTCTTGCTCTGTCACCTAGGCTGGAGTGCAGTGGTGCAATCCTAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATCCTCCTGCCTCAGCCACCCGAGTAGCTGGGATTATTGGCATAAGCCGCCACTCTAGGCTAACTTTTGTATTTTTAGTCGAGACAGGGTTTCACCATGTTGGACAAGCTGGTATCAATCTCCTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:51053430|51053744 hsa-miR-25-5p 0 0 1
chr12:51053430|51053744 hsa-miR-25-3p 0 0 1
chr12:51053430|51053744 hsa-miR-32-5p 0 0 1
chr12:51053430|51053744 hsa-miR-32-3p 0 0 1
chr12:51053430|51053744 hsa-miR-10a-5p 0 0 1
chr12:51053430|51053744 hsa-miR-10a-3p 0 0 1
chr12:51053430|51053744 hsa-miR-10b-5p 0 0 1
chr12:51053430|51053744 hsa-miR-10b-3p 0 0 1
chr12:51053430|51053744 hsa-miR-363-5p 0 0 1
chr12:51053430|51053744 hsa-miR-363-3p 0 0 1
chr12:51053430|51053744 hsa-miR-367-5p 0 0 1
chr12:51053430|51053744 hsa-miR-367-3p 0 0 1
chr12:51053430|51053744 hsa-miR-133b 0 0 1
chr12:51053430|51053744 hsa-miR-92b-5p 0 0 1
chr12:51053430|51053744 hsa-miR-92b-3p 0 0 1
chr12:51053430|51053744 hsa-miR-608 1 0 1
chr12:51053430|51053744 hsa-miR-610 0 0 1
chr12:51053430|51053744 hsa-miR-612 0 0 1
chr12:51053430|51053744 hsa-miR-634 0 0 1
chr12:51053430|51053744 hsa-miR-650 0 1 1
chr12:51053430|51053744 hsa-miR-766-5p 0 0 1
chr12:51053430|51053744 hsa-miR-766-3p 0 0 1
chr12:51053430|51053744 hsa-miR-665 0 1 1
chr12:51053430|51053744 hsa-miR-940 0 0 1
chr12:51053430|51053744 hsa-miR-1183 0 0 1
chr12:51053430|51053744 hsa-miR-1246 0 0 1
chr12:51053430|51053744 hsa-miR-1827 0 0 1
chr12:51053430|51053744 hsa-miR-767-5p 0 0 1
chr12:51053430|51053744 hsa-miR-339-5p 0 0 1
chr12:51053430|51053744 hsa-miR-508-5p 0 0 1
chr12:51053430|51053744 hsa-miR-342-5p 0 0 1
chr12:51053430|51053744 hsa-miR-542-3p 0 0 1
chr12:51053430|51053744 hsa-miR-548c-3p 0 0 1
chr12:51053430|51053744 hsa-miR-371-5p 0 0 1
chr12:51053430|51053744 hsa-miR-1285 0 0 1
chr12:51053430|51053744 hsa-miR-133a 0 0 1
chr12:51053430|51053744 hsa-miR-92a 0 0 1
chr12:51053430|51053744 hsa-miR-219-5p 0 0 1
chr12:51053430|51053744 hsa-miR-762 1 0 0
chr12:51053430|51053744 hsa-miR-711 0 1 0
chr12:51053430|51053744 hsa-miR-3135a 0 1 0
chr12:51053430|51053744 hsa-miR-3174 0 1 0
chr12:51053430|51053744 hsa-miR-4298 1 0 0
chr12:51053430|51053744 hsa-miR-378g 0 1 0
chr12:51053430|51053744 hsa-miR-4505 1 0 0
chr12:51053430|51053744 hsa-miR-4651 1 1 0
chr12:51053430|51053744 hsa-miR-4656 1 1 0
chr12:51053430|51053744 hsa-miR-4675 0 1 0
chr12:51053430|51053744 hsa-miR-4739 1 0 0
chr12:51053430|51053744 hsa-miR-4741 1 0 0
chr12:51053430|51053744 hsa-miR-5787 1 1 0
chr12:51053430|51053744 hsa-miR-6745 0 1 0
chr12:51053430|51053744 hsa-miR-7703 0 1 0
chr12:51053430|51053744 hsa-miR-12127 0 1 0
chr12:51053430|51053744 hsa-miR-6765-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6720-5p 0 1 0
chr12:51053430|51053744 hsa-miR-7851-3p 0 1 0
chr12:51053430|51053744 hsa-miR-7114-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6089 1 0 0
chr12:51053430|51053744 hsa-miR-4695-5p 1 1 0
chr12:51053430|51053744 hsa-miR-4722-5p 1 1 0
chr12:51053430|51053744 hsa-miR-4655-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6742-5p 0 1 0
chr12:51053430|51053744 hsa-miR-6798-5p 1 0 0
chr12:51053430|51053744 hsa-miR-2467-3p 1 1 0
chr12:51053430|51053744 hsa-miR-6782-5p 1 0 0
chr12:51053430|51053744 hsa-miR-4793-3p 0 1 0
chr12:51053430|51053744 hsa-let-7d-5p 0 1 0
chr12:51053430|51053744 hsa-let-7b-5p 0 1 0
chr12:51053430|51053744 hsa-miR-3614-5p 0 1 0
chr12:51053430|51053744 hsa-miR-6800-5p 0 1 0
chr12:51053430|51053744 hsa-miR-194-3p 0 1 0
chr12:51053430|51053744 hsa-let-7c-5p 0 1 0
chr12:51053430|51053744 hsa-let-7e-5p 0 1 0
chr12:51053430|51053744 hsa-let-7a-5p 0 1 0
chr12:51053430|51053744 hsa-miR-7112-3p 0 1 0
chr12:51053430|51053744 hsa-miR-500a-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6770-3p 0 1 0
chr12:51053430|51053744 hsa-miR-92a-3p 0 1 0
chr12:51053430|51053744 hsa-miR-98-5p 0 1 0
chr12:51053430|51053744 hsa-miR-4679 0 1 0
chr12:51053430|51053744 hsa-miR-3664-5p 0 1 0
chr12:51053430|51053744 hsa-miR-10400-5p 1 0 0
chr12:51053430|51053744 hsa-miR-1207-5p 1 0 0
chr12:51053430|51053744 hsa-miR-4763-3p 1 0 0
chr12:51053430|51053744 hsa-miR-6769b-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6812-5p 1 1 0
chr12:51053430|51053744 hsa-miR-6865-5p 1 1 0
chr12:51053430|51053744 hsa-miR-6893-5p 0 1 0
chr12:51053430|51053744 hsa-miR-6743-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6756-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6815-5p 0 1 0
chr12:51053430|51053744 hsa-miR-6819-5p 1 1 0
chr12:51053430|51053744 hsa-miR-6722-3p 1 1 0
chr12:51053430|51053744 hsa-miR-6774-5p 1 0 0
chr12:51053430|51053744 hsa-miR-6511a-5p 0 1 0
chr12:51053430|51053744 hsa-miR-377-5p 0 1 0
chr12:51053430|51053744 hsa-miR-6807-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:51053430|51053744
ORF Type ORF1
Protein Length 71
Nucleotide Length 213
Protein Sequence MRWSLALSPRLECSGAILAHCNLCLLGSSDPPASATRVAGIIGISRHSRLTFVFLVETGFHHVGQAGINLL
Nucleotide Sequence TTGAGATGGAGTCTTGCTCTGTCACCTAGGCTGGAGTGCAGTGGTGCAATCCTAGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGTGATCCTCCTGCCTCAGCCACCCGAGTAGCTGGGATTATTGGCATAAGCCGCCACTCTAGGCTAACTTTTGTATTTTTAGTCGAGACAGGGTTTCACCATGTTGGACAAGCTGGTATCAATCTCCTG
CircID chr12:51053430|51053744
ORF Type ORF2
Protein Length 42
Nucleotide Length 129
Protein Sequence MHSSLGDRARLHLKKKKKEIWSFFWAVIEVYCTVGWMDCLLY
Nucleotide Sequence CTGCACTCCAGCCTAGGTGACAGAGCAAGACTCCATCTCAAAAAGAAAAAGAAAGAAATTTGGTCCTTTTTCTGGGCTGTAATAGAAGTTTACTGTACAGTGGGGTGGATGGATTGTCTATTGTATTAA
CircID chr12:51053430|51053744
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MRQEDHLNPGGRGCSELGLHHCTPA
Nucleotide Sequence CTGAGGCAGGAGGATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCTAGGATTGCACCACTGCACTCCAGCCTAG
CircID chr12:51053430|51053744
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MVLFLGCNRSLLYSGVDGLSIVLTTYL
Nucleotide Sequence TTGGTCCTTTTTCTGGGCTGTAATAGAAGTTTACTGTACAGTGGGGTGGATGGATTGTCTATTGTATTAACAACTTATTTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab