CircRNA Information

General Information
circRNA Basic Information
CircID chr12:51063352|51063562
Strand +
CircType exon
Host Gene ENSG00000110925.5;
Algorism CIRI2;
Sequence CAGCCCTACCTTGATCTGGGGATAGTCTTGGGGCAAAGAAAGCTGCGTAGTGCTGAACATTAAGCTTTCTGGGCCACTGGAACAAAGAACTAGGATCTCACAGGAAAAGCTGGGTAACTCAAGCAGCTATTCTTTCTGTAGGGACCAGAACACGAGAATTTGAAGAGCATGGCAAAGCCCTTTCTCTCCCAAGCCCCAGGCAGAGTACAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:51063352|51063562 hsa-miR-22-5p 0 0 1
chr12:51063352|51063562 hsa-miR-22-3p 0 0 1
chr12:51063352|51063562 hsa-miR-185-5p 0 0 1
chr12:51063352|51063562 hsa-miR-185-3p 0 0 1
chr12:51063352|51063562 hsa-miR-186-5p 0 0 1
chr12:51063352|51063562 hsa-miR-186-3p 0 0 1
chr12:51063352|51063562 hsa-miR-375-5p 0 0 1
chr12:51063352|51063562 hsa-miR-375-3p 0 0 1
chr12:51063352|51063562 hsa-miR-607 0 0 1
chr12:51063352|51063562 hsa-miR-661 0 0 1
chr12:51063352|51063562 hsa-miR-663b 0 0 1
chr12:51063352|51063562 hsa-miR-1825 0 0 1
chr12:51063352|51063562 hsa-miR-145-5p 0 0 1
chr12:51063352|51063562 hsa-miR-199a-5p 0 0 1
chr12:51063352|51063562 hsa-miR-409-3p 0 0 1
chr12:51063352|51063562 hsa-miR-199b-5p 0 0 1
chr12:51063352|51063562 hsa-miR-1254 0 0 1
chr12:51063352|51063562 hsa-miR-5787 1 0 0
chr12:51063352|51063562 hsa-miR-8089 1 0 0
chr12:51063352|51063562 hsa-miR-3189-5p 1 0 0
chr12:51063352|51063562 hsa-miR-149-3p 1 0 0
chr12:51063352|51063562 hsa-miR-4776-3p 1 0 0
chr12:51063352|51063562 hsa-miR-3158-3p 1 0 0
chr12:51063352|51063562 hsa-miR-6755-3p 1 0 0
chr12:51063352|51063562 hsa-miR-6803-5p 1 0 0
chr12:51063352|51063562 hsa-miR-7107-5p 1 0 0
chr12:51063352|51063562 hsa-miR-6779-5p 1 0 0
chr12:51063352|51063562 hsa-miR-6797-5p 1 0 0
chr12:51063352|51063562 hsa-miR-7111-5p 1 0 0
chr12:51063352|51063562 hsa-miR-4728-5p 1 0 0
chr12:51063352|51063562 hsa-miR-6731-5p 1 0 0
chr12:51063352|51063562 hsa-miR-6791-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:51063352|51063562
ORF Type ORF1
Protein Length 36
Nucleotide Length 111
Protein Sequence MNIKLSGPLEQRTRISQEKLGNSSSYSFCRDQNTRI
Nucleotide Sequence CTGAACATTAAGCTTTCTGGGCCACTGGAACAAAGAACTAGGATCTCACAGGAAAAGCTGGGTAACTCAAGCAGCTATTCTTTCTGTAGGGACCAGAACACGAGAATTTGA
CircID chr12:51063352|51063562
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MGHWNKELGSHRKSWVTQAAILSVGTRTREFEEHGKALSLPSPRQST
Nucleotide Sequence CTGGGCCACTGGAACAAAGAACTAGGATCTCACAGGAAAAGCTGGGTAACTCAAGCAGCTATTCTTTCTGTAGGGACCAGAACACGAGAATTTGAAGAGCATGGCAAAGCCCTTTCTCTCCCAAGCCCCAGGCAGAGTACA
CircID chr12:51063352|51063562
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MGLGRERALPCSSNSRVLVPTERIAA
Nucleotide Sequence CTGGGGCTTGGGAGAGAAAGGGCTTTGCCATGCTCTTCAAATTCTCGTGTTCTGGTCCCTACAGAAAGAATAGCTGCTTGA
CircID chr12:51063352|51063562
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MFQWPRKLNVQHYAAFFAPRLSPDQGRA
Nucleotide Sequence TTGTTCCAGTGGCCCAGAAAGCTTAATGTTCAGCACTACGCAGCTTTCTTTGCCCCAAGACTATCCCCAGATCAAGGTAGGGCT
CircID chr12:51063352|51063562
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence LYSAWGLGEKGLCHALQILVFWSLQKE
Nucleotide Sequence TTGTACTCTGCCTGGGGCTTGGGAGAGAAAGGGCTTTGCCATGCTCTTCAAATTCTCGTGTTCTGGTCCCTACAGAAAGAATAG
CircID chr12:51063352|51063562
ORF Type ORF6
Protein Length 42
Nucleotide Length 126
Protein Sequence MLELPSFSCEILVLCSSGPESLMFSTTQLSLPQDYPQIKVGL
Nucleotide Sequence CTGCTTGAGTTACCCAGCTTTTCCTGTGAGATCCTAGTTCTTTGTTCCAGTGGCCCAGAAAGCTTAATGTTCAGCACTACGCAGCTTTCTTTGCCCCAAGACTATCCCCAGATCAAGGTAGGGCTG
CircID chr12:51063352|51063562
ORF Type ORF7
Protein Length 37
Nucleotide Length 114
Protein Sequence MPGAWERKGFAMLFKFSCSGPYRKNSCLSYPAFPVRS
Nucleotide Sequence CTGCCTGGGGCTTGGGAGAGAAAGGGCTTTGCCATGCTCTTCAAATTCTCGTGTTCTGGTCCCTACAGAAAGAATAGCTGCTTGAGTTACCCAGCTTTTCCTGTGAGATCCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab