CircRNA Information

General Information
circRNA Basic Information
CircID chr12:51922238|51922391
Strand -
CircType exon
Host Gene ENSG00000139567.11;
Algorism CIRI2;
Sequence CTCCTAGTCTAAGTCTGCAAGCTCCAGTTCTTGCCTAAAACCATGCCAGTGGCCACCCTTGGGCTCAGACAGCTCTGGGCCTTTTGACCACAAGCCAGCCCCTCGCCCTCTCTGTGGCATAGTCTTCTCTGCCCCAGGACTGCAGGGCGGCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:51922238|51922391 hsa-miR-31-5p 0 0 1
chr12:51922238|51922391 hsa-miR-31-3p 0 0 1
chr12:51922238|51922391 hsa-miR-588 0 0 1
chr12:51922238|51922391 hsa-miR-626 0 1 1
chr12:51922238|51922391 hsa-miR-1253 0 0 1
chr12:51922238|51922391 hsa-miR-1225-3p 0 0 1
chr12:51922238|51922391 hsa-miR-486-3p 0 0 1
chr12:51922238|51922391 hsa-miR-423-5p 0 0 1
chr12:51922238|51922391 hsa-miR-1233 0 0 1
chr12:51922238|51922391 hsa-miR-151-3p 0 0 1
chr12:51922238|51922391 hsa-miR-762 1 0 0
chr12:51922238|51922391 hsa-miR-1293 1 0 0
chr12:51922238|51922391 hsa-miR-3132 1 1 0
chr12:51922238|51922391 hsa-miR-4327 1 0 0
chr12:51922238|51922391 hsa-miR-1268b 1 0 0
chr12:51922238|51922391 hsa-miR-3135b 1 0 0
chr12:51922238|51922391 hsa-miR-4498 1 1 0
chr12:51922238|51922391 hsa-miR-4514 1 0 0
chr12:51922238|51922391 hsa-miR-4656 1 0 0
chr12:51922238|51922391 hsa-miR-4739 1 0 0
chr12:51922238|51922391 hsa-miR-4754 0 1 0
chr12:51922238|51922391 hsa-miR-6085 0 1 0
chr12:51922238|51922391 hsa-miR-6090 1 0 0
chr12:51922238|51922391 hsa-miR-6745 1 0 0
chr12:51922238|51922391 hsa-miR-8089 1 0 0
chr12:51922238|51922391 hsa-miR-12115 1 0 0
chr12:51922238|51922391 hsa-miR-3622b-5p 1 0 0
chr12:51922238|51922391 hsa-miR-197-5p 1 1 0
chr12:51922238|51922391 hsa-miR-185-3p 1 1 0
chr12:51922238|51922391 hsa-miR-6874-5p 1 1 0
chr12:51922238|51922391 hsa-miR-6821-5p 1 0 0
chr12:51922238|51922391 hsa-miR-1343-3p 0 1 0
chr12:51922238|51922391 hsa-miR-6852-5p 0 1 0
chr12:51922238|51922391 hsa-miR-4738-3p 1 0 0
chr12:51922238|51922391 hsa-miR-4640-5p 1 0 0
chr12:51922238|51922391 hsa-miR-1908-5p 1 0 0
chr12:51922238|51922391 hsa-miR-1228-5p 1 0 0
chr12:51922238|51922391 hsa-miR-149-3p 1 1 0
chr12:51922238|51922391 hsa-miR-6877-5p 1 0 0
chr12:51922238|51922391 hsa-miR-3120-5p 0 1 0
chr12:51922238|51922391 hsa-miR-4774-5p 0 1 0
chr12:51922238|51922391 hsa-miR-6814-5p 0 1 0
chr12:51922238|51922391 hsa-miR-6768-3p 0 1 0
chr12:51922238|51922391 hsa-miR-1207-5p 1 0 0
chr12:51922238|51922391 hsa-miR-4763-3p 1 0 0
chr12:51922238|51922391 hsa-miR-6787-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6737-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6743-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6756-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6813-5p 1 1 0
chr12:51922238|51922391 hsa-miR-6774-5p 1 0 0
chr12:51922238|51922391 hsa-miR-3620-5p 1 0 0
chr12:51922238|51922391 hsa-miR-328-5p 1 0 0
chr12:51922238|51922391 hsa-miR-4649-5p 1 1 0
chr12:51922238|51922391 hsa-miR-4726-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6729-5p 1 1 0
chr12:51922238|51922391 hsa-miR-675-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6846-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6848-5p 1 0 0
chr12:51922238|51922391 hsa-miR-4633-3p 1 0 0
chr12:51922238|51922391 hsa-miR-6511a-5p 1 0 0
chr12:51922238|51922391 hsa-miR-3198 1 0 0
chr12:51922238|51922391 hsa-miR-6758-5p 0 1 0
chr12:51922238|51922391 hsa-miR-6856-5p 1 1 0
chr12:51922238|51922391 hsa-miR-1199-5p 1 1 0
chr12:51922238|51922391 hsa-miR-6736-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6724-5p 1 0 0
chr12:51922238|51922391 hsa-miR-6791-5p 1 1 0
chr12:51922238|51922391 hsa-miR-6718-5p 1 1 0
chr12:51922238|51922391 hsa-miR-6876-3p 0 1 0
chr12:51922238|51922391 hsa-miR-708-5p 1 0 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:51922238|51922391
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MGSDSSGPFDHKPAPRPLCGIVFSAPGLQGGF
Nucleotide Sequence TTGGGCTCAGACAGCTCTGGGCCTTTTGACCACAAGCCAGCCCCTCGCCCTCTCTGTGGCATAGTCTTCTCTGCCCCAGGACTGCAGGGCGGCTTC
CircID chr12:51922238|51922391
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MQSWGREDYATERARGWLVVKRPRAV
Nucleotide Sequence CTGCAGTCCTGGGGCAGAGAAGACTATGCCACAGAGAGGGCGAGGGGCTGGCTTGTGGTCAAAAGGCCCAGAGCTGTCTGA
CircID chr12:51922238|51922391
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MPQRGRGAGLWSKGPELSEPKGGHWHGFRQELELADLD
Nucleotide Sequence ATGCCACAGAGAGGGCGAGGGGCTGGCTTGTGGTCAAAAGGCCCAGAGCTGTCTGAGCCCAAGGGTGGCCACTGGCATGGTTTTAGGCAAGAACTGGAGCTTGCAGACTTAGACTAG
CircID chr12:51922238|51922391
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MGQRRLCHREGEGLACGQKAQSCLSPRVATGMVLGKNWSLQT
Nucleotide Sequence CTGGGGCAGAGAAGACTATGCCACAGAGAGGGCGAGGGGCTGGCTTGTGGTCAAAAGGCCCAGAGCTGTCTGAGCCCAAGGGTGGCCACTGGCATGGTTTTAGGCAAGAACTGGAGCTTGCAGACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab