CircRNA Information

General Information
circRNA Basic Information
CircID chr12:51922924|51923161
Strand +
CircType exon
Host Gene ENSG00000139567.11;
Algorism CIRI2;
Sequence CTGTCCCCTGTCACTCCACTTCCTGCCCCAGGCCTTCTCTTAGGGATTTTCCAGGCTTTGGGGAGCTGCTGCTTTCAGTTTCTGGCTGTGGGGTCTCAGCAGGAGTTTGTTCCAAAACCCAGTAGAAATAAAATCCTTCAAGAGGGAGATGATTCGTGGGCTGGGTGGATTCCAGTGACCAGAGGACGTGCAAACTCTGCCCTAATGATCTGGGAACCTAGCCCATCCATTGAGCTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:51922924|51923161 hsa-miR-15a-5p 0 0 1
chr12:51922924|51923161 hsa-miR-15a-3p 0 0 1
chr12:51922924|51923161 hsa-miR-15b-5p 0 0 1
chr12:51922924|51923161 hsa-miR-15b-3p 0 0 1
chr12:51922924|51923161 hsa-miR-122-5p 0 0 1
chr12:51922924|51923161 hsa-miR-122-3p 0 0 1
chr12:51922924|51923161 hsa-miR-195-5p 0 0 1
chr12:51922924|51923161 hsa-miR-195-3p 0 0 1
chr12:51922924|51923161 hsa-miR-370-5p 0 0 1
chr12:51922924|51923161 hsa-miR-370-3p 0 0 1
chr12:51922924|51923161 hsa-miR-424-5p 0 0 1
chr12:51922924|51923161 hsa-miR-424-3p 0 0 1
chr12:51922924|51923161 hsa-miR-495-5p 0 0 1
chr12:51922924|51923161 hsa-miR-495-3p 0 0 1
chr12:51922924|51923161 hsa-miR-497-5p 0 0 1
chr12:51922924|51923161 hsa-miR-497-3p 0 0 1
chr12:51922924|51923161 hsa-miR-507 -6 0 1
chr12:51922924|51923161 hsa-miR-557 -9 0 1
chr12:51922924|51923161 hsa-miR-605-5p 0 0 1
chr12:51922924|51923161 hsa-miR-605-3p 0 0 1
chr12:51922924|51923161 hsa-miR-629-5p 0 0 1
chr12:51922924|51923161 hsa-miR-629-3p 0 0 1
chr12:51922924|51923161 hsa-miR-646 -7 1 1
chr12:51922924|51923161 hsa-miR-661 -17 0 1
chr12:51922924|51923161 hsa-miR-1296-5p 0 0 1
chr12:51922924|51923161 hsa-miR-1296-3p 0 0 1
chr12:51922924|51923161 hsa-miR-1290 0 0 1
chr12:51922924|51923161 hsa-miR-1252-5p 0 0 1
chr12:51922924|51923161 hsa-miR-1252-3p 0 0 1
chr12:51922924|51923161 hsa-miR-769-5p -9 0 1
chr12:51922924|51923161 hsa-miR-486-3p -10 0 1
chr12:51922924|51923161 hsa-miR-875-3p -2 1 1
chr12:51922924|51923161 hsa-miR-542-3p 0 0 1
chr12:51922924|51923161 hsa-miR-642 0 0 1
chr12:51922924|51923161 hsa-miR-16 0 0 1
chr12:51922924|51923161 hsa-miR-1254 0 0 1
chr12:51922924|51923161 hsa-miR-4329 -11 1 0
chr12:51922924|51923161 hsa-miR-3714 -11 1 0
chr12:51922924|51923161 hsa-miR-3909 -8 1 0
chr12:51922924|51923161 hsa-miR-4660 -5 1 0
chr12:51922924|51923161 hsa-miR-5685 -3 1 0
chr12:51922924|51923161 hsa-miR-12115 0 1 0
chr12:51922924|51923161 hsa-miR-93-3p -13 1 0
chr12:51922924|51923161 hsa-miR-500b-3p 1 1 0
chr12:51922924|51923161 hsa-miR-1236-5p 0 1 0
chr12:51922924|51923161 hsa-miR-4722-5p -12 1 0
chr12:51922924|51923161 hsa-miR-6721-5p -13 1 0
chr12:51922924|51923161 hsa-miR-3678-3p -20 1 0
chr12:51922924|51923161 hsa-miR-653-3p -2 1 0
chr12:51922924|51923161 hsa-miR-4766-5p -3 1 0
chr12:51922924|51923161 hsa-miR-7107-5p -18 1 0
chr12:51922924|51923161 hsa-miR-6852-3p -4 1 0
chr12:51922924|51923161 hsa-miR-4632-5p -15 1 0
chr12:51922924|51923161 hsa-miR-6735-5p -23 1 0
chr12:51922924|51923161 hsa-miR-7843-5p -19 1 0
chr12:51922924|51923161 hsa-miR-3116 -8 1 0
chr12:51922924|51923161 hsa-miR-1302 -6 1 0
chr12:51922924|51923161 hsa-miR-6838-5p -3 1 0
chr12:51922924|51923161 hsa-miR-6824-3p -9 1 0
chr12:51922924|51923161 hsa-miR-9902 -3 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:51922924|51923161
ORF Type ORF1
Protein Length 79
Nucleotide Length 237
Protein Sequence LSPVTPLPAPGLLLGIFQALGSCCFQFLAVGSQQEFVPKPSRNKILQEGDDSWAGWIPVTRGRANSALMIWEPSPSIEL
Nucleotide Sequence CTGTCCCCTGTCACTCCACTTCCTGCCCCAGGCCTTCTCTTAGGGATTTTCCAGGCTTTGGGGAGCTGCTGCTTTCAGTTTCTGGCTGTGGGGTCTCAGCAGGAGTTTGTTCCAAAACCCAGTAGAAATAAAATCCTTCAAGAGGGAGATGATTCGTGGGCTGGGTGGATTCCAGTGACCAGAGGACGTGCAAACTCTGCCCTAATGATCTGGGAACCTAGCCCATCCATTGAGCTT
CircID chr12:51922924|51923161
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MWGLSRSLFQNPVEIKSFKREMIRGLGGFQ
Nucleotide Sequence CTGTGGGGTCTCAGCAGGAGTTTGTTCCAAAACCCAGTAGAAATAAAATCCTTCAAGAGGGAGATGATTCGTGGGCTGGGTGGATTCCAGTGA
CircID chr12:51922924|51923161
ORF Type ORF3
Protein Length 60
Nucleotide Length 183
Protein Sequence MHVLWSLESTQPTNHLPLEGFYFYWVLEQTPAETPQPETESSSSPKPGKSLREGLGQEVE
Nucleotide Sequence TTGCACGTCCTCTGGTCACTGGAATCCACCCAGCCCACGAATCATCTCCCTCTTGAAGGATTTTATTTCTACTGGGTTTTGGAACAAACTCCTGCTGAGACCCCACAGCCAGAAACTGAAAGCAGCAGCTCCCCAAAGCCTGGAAAATCCCTAAGAGAAGGCCTGGGGCAGGAAGTGGAGTGA
CircID chr12:51922924|51923161
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MKDFISTGFWNKLLLRPHSQKLKAAAPQSLENP
Nucleotide Sequence TTGAAGGATTTTATTTCTACTGGGTTTTGGAACAAACTCCTGCTGAGACCCCACAGCCAGAAACTGAAAGCAGCAGCTCCCCAAAGCCTGGAAAATCCCTAA
CircID chr12:51922924|51923161
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence MDGLGSQIIRAEFARPLVTGIHPAHESSPS
Nucleotide Sequence ATGGATGGGCTAGGTTCCCAGATCATTAGGGCAGAGTTTGCACGTCCTCTGGTCACTGGAATCCACCCAGCCCACGAATCATCTCCCTCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab