CircRNA Information

General Information
circRNA Basic Information
CircID chr12:51924716|51924896
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGGGACTTCTAGGCGTGAGGACTTTGCCATCTCTTGGGCTGTTGATCTTAATGTTGGTGAGGATATGGAGGAAACAGCACCTTCCTTGGAGGCTGGTGCAAGGCAGGACTGAGGGAGGATGGTGCCTTGGAGGGTGGAGAGAAAAACTGTTGGTGAGGCCTTGGCAGGGGAAGGGGTGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:51924716|51924896 hsa-miR-18a-5p 0 0 1
chr12:51924716|51924896 hsa-miR-18a-3p 0 0 1
chr12:51924716|51924896 hsa-miR-18b-5p 0 0 1
chr12:51924716|51924896 hsa-miR-18b-3p 0 0 1
chr12:51924716|51924896 hsa-miR-506-5p 0 0 1
chr12:51924716|51924896 hsa-miR-506-3p 0 0 1
chr12:51924716|51924896 hsa-miR-421 0 0 1
chr12:51924716|51924896 hsa-miR-1226-5p 0 0 1
chr12:51924716|51924896 hsa-miR-1226-3p 0 0 1
chr12:51924716|51924896 hsa-miR-1238-5p 0 0 1
chr12:51924716|51924896 hsa-miR-1238-3p 0 0 1
chr12:51924716|51924896 hsa-miR-767-5p 0 0 1
chr12:51924716|51924896 hsa-miR-331-3p 0 0 1
chr12:51924716|51924896 hsa-miR-455-3p 0 0 1
chr12:51924716|51924896 hsa-miR-124 0 0 1
chr12:51924716|51924896 hsa-miR-1470 1 0 0
chr12:51924716|51924896 hsa-miR-3183 1 0 0
chr12:51924716|51924896 hsa-miR-4290 1 0 0
chr12:51924716|51924896 hsa-miR-3615 1 0 0
chr12:51924716|51924896 hsa-miR-4512 1 0 0
chr12:51924716|51924896 hsa-miR-5685 0 1 0
chr12:51924716|51924896 hsa-miR-197-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6749-3p 1 1 0
chr12:51924716|51924896 hsa-miR-6747-3p 1 1 0
chr12:51924716|51924896 hsa-miR-766-3p 1 0 0
chr12:51924716|51924896 hsa-miR-593-5p 1 0 0
chr12:51924716|51924896 hsa-miR-6873-3p 1 0 0
chr12:51924716|51924896 hsa-miR-7110-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6841-3p 0 1 0
chr12:51924716|51924896 hsa-miR-6845-3p 1 0 0
chr12:51924716|51924896 hsa-miR-877-3p 1 0 0
chr12:51924716|51924896 hsa-miR-3194-5p 0 1 0
chr12:51924716|51924896 hsa-miR-4713-5p 1 0 0
chr12:51924716|51924896 hsa-miR-6763-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6803-3p 1 0 0
chr12:51924716|51924896 hsa-miR-7113-3p 1 0 0
chr12:51924716|51924896 hsa-miR-3667-3p 1 1 0
chr12:51924716|51924896 hsa-miR-7111-3p 1 0 0
chr12:51924716|51924896 hsa-miR-5196-3p 1 1 0
chr12:51924716|51924896 hsa-miR-4667-3p 1 0 0
chr12:51924716|51924896 hsa-miR-4446-5p 1 1 0
chr12:51924716|51924896 hsa-miR-6830-5p 0 1 0
chr12:51924716|51924896 hsa-miR-6786-3p 1 0 0
chr12:51924716|51924896 hsa-miR-339-5p 1 0 0
chr12:51924716|51924896 hsa-miR-4708-3p 0 1 0
chr12:51924716|51924896 hsa-miR-1236-3p 1 0 0
chr12:51924716|51924896 hsa-miR-4687-5p 1 0 0
chr12:51924716|51924896 hsa-miR-4758-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6887-3p 1 0 0
chr12:51924716|51924896 hsa-miR-1910-5p 1 1 0
chr12:51924716|51924896 hsa-miR-6872-3p 1 0 0
chr12:51924716|51924896 hsa-miR-4632-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6865-3p 1 0 0
chr12:51924716|51924896 hsa-miR-5088-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6777-3p 1 0 0
chr12:51924716|51924896 hsa-miR-937-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6760-3p 1 0 0
chr12:51924716|51924896 hsa-miR-1229-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6734-3p 0 1 0
chr12:51924716|51924896 hsa-miR-4639-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6838-3p 0 1 0
chr12:51924716|51924896 hsa-miR-3688-5p 0 1 0
chr12:51924716|51924896 hsa-miR-4709-5p 1 1 0
chr12:51924716|51924896 hsa-miR-3162-3p 1 0 0
chr12:51924716|51924896 hsa-miR-3127-3p 1 1 0
chr12:51924716|51924896 hsa-miR-4685-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6754-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6799-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6791-3p 1 0 0
chr12:51924716|51924896 hsa-miR-2682-3p 1 0 0
chr12:51924716|51924896 hsa-miR-4722-3p 1 1 0
chr12:51924716|51924896 hsa-miR-6727-3p 0 1 0
chr12:51924716|51924896 hsa-miR-6511a-3p 0 1 0
chr12:51924716|51924896 hsa-miR-6756-3p 1 1 0
chr12:51924716|51924896 hsa-miR-6784-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6792-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6862-3p 1 0 0
chr12:51924716|51924896 hsa-miR-10401-3p 1 0 0
chr12:51924716|51924896 hsa-miR-6801-3p 1 1 0
chr12:51924716|51924896 hsa-miR-11181-5p 1 0 0
chr12:51924716|51924896 hsa-miR-3059-5p 1 0 0
chr12:51924716|51924896 hsa-miR-6511b-3p 1 1 0
chr12:51924716|51924896 hsa-miR-4691-5p 0 1 0
chr12:51924716|51924896 hsa-miR-4768-5p 0 1 0
chr12:51924716|51924896 hsa-miR-4690-3p 0 1 0
chr12:51924716|51924896 hsa-miR-6833-3p 1 1 0
chr12:51924716|51924896 hsa-miR-412-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:51924716|51924896
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MPSLGLLILMLVRIWRKQHLPWRLVQGRTEGGWCLGGWREKLLVRPWQGKGW
Nucleotide Sequence TTGCCATCTCTTGGGCTGTTGATCTTAATGTTGGTGAGGATATGGAGGAAACAGCACCTTCCTTGGAGGCTGGTGCAAGGCAGGACTGAGGGAGGATGGTGCCTTGGAGGGTGGAGAGAAAAACTGTTGGTGAGGCCTTGGCAGGGGAAGGGGTGG
CircID chr12:51924716|51924896
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPCTSLQGRCCFLHILTNIKINSPRDGKVLTPRSP
Nucleotide Sequence CTGCCTTGCACCAGCCTCCAAGGAAGGTGCTGTTTCCTCCATATCCTCACCAACATTAAGATCAACAGCCCAAGAGATGGCAAAGTCCTCACGCCTAGAAGTCCC
CircID chr12:51924716|51924896
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MPRPHQQFFSPPSKAPSSLSPALHQPPRKVLFPPYPHQH
Nucleotide Sequence CTGCCAAGGCCTCACCAACAGTTTTTCTCTCCACCCTCCAAGGCACCATCCTCCCTCAGTCCTGCCTTGCACCAGCCTCCAAGGAAGGTGCTGTTTCCTCCATATCCTCACCAACATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab