CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52057207|52057466
Strand -
CircType exon
Host Gene ENSG00000123358.18;
Algorism CIRI2;
Sequence CTGTTGCTGGAGTCGGCCTTCCTGGAGCTCTTCATCCTCCGCCTGGCGTACAGGTGAGAGCCACTGACTGTCTGCCCAGCCCCTTTCCCTGATACACCTGCCTGTGAACCACCCTGATCGCTCTTCGTGCCCATCTGCCTGCCAGGTCTAAGCCAGGCGAGGGCAAGCTCATCTTCTGCTCAGGCCTGGTGCTACACCGGCTGCAGTGTGCCCGTGGCTTCGGGGACTGGATTGACAGTATCCTGGCCTTCTCAAGGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52057207|52057466 hsa-miR-27a-5p 0 0 1
chr12:52057207|52057466 hsa-miR-27a-3p 0 0 1
chr12:52057207|52057466 hsa-miR-29a-5p 0 0 1
chr12:52057207|52057466 hsa-miR-29a-3p 0 0 1
chr12:52057207|52057466 hsa-miR-27b-5p 0 0 1
chr12:52057207|52057466 hsa-miR-27b-3p 0 0 1
chr12:52057207|52057466 hsa-miR-29c-5p 0 0 1
chr12:52057207|52057466 hsa-miR-29c-3p 0 0 1
chr12:52057207|52057466 hsa-miR-580-5p 0 0 1
chr12:52057207|52057466 hsa-miR-580-3p 0 0 1
chr12:52057207|52057466 hsa-miR-612 1 0 1
chr12:52057207|52057466 hsa-miR-631 0 0 1
chr12:52057207|52057466 hsa-miR-658 1 0 1
chr12:52057207|52057466 hsa-miR-766-5p 0 0 1
chr12:52057207|52057466 hsa-miR-766-3p 0 0 1
chr12:52057207|52057466 hsa-miR-298 0 0 1
chr12:52057207|52057466 hsa-miR-874-5p 0 0 1
chr12:52057207|52057466 hsa-miR-874-3p 0 0 1
chr12:52057207|52057466 hsa-miR-665 0 0 1
chr12:52057207|52057466 hsa-miR-760 0 0 1
chr12:52057207|52057466 hsa-miR-940 0 0 1
chr12:52057207|52057466 hsa-miR-1229-5p 0 0 1
chr12:52057207|52057466 hsa-miR-1229-3p 0 0 1
chr12:52057207|52057466 hsa-miR-1293 0 0 1
chr12:52057207|52057466 hsa-miR-1253 0 0 1
chr12:52057207|52057466 hsa-miR-1324 0 0 1
chr12:52057207|52057466 hsa-miR-486-5p 0 0 1
chr12:52057207|52057466 hsa-miR-1184 0 0 1
chr12:52057207|52057466 hsa-miR-508-5p 0 0 1
chr12:52057207|52057466 hsa-miR-876-3p 0 0 1
chr12:52057207|52057466 hsa-miR-513a-5p 0 0 1
chr12:52057207|52057466 hsa-miR-556-5p 0 0 1
chr12:52057207|52057466 hsa-miR-338-3p 0 0 1
chr12:52057207|52057466 hsa-miR-1207-5p 1 0 1
chr12:52057207|52057466 hsa-miR-509-3-5p 0 0 1
chr12:52057207|52057466 hsa-miR-509-5p 0 0 1
chr12:52057207|52057466 hsa-miR-220c 0 0 1
chr12:52057207|52057466 hsa-miR-1300 0 0 1
chr12:52057207|52057466 hsa-miR-1285 0 0 1
chr12:52057207|52057466 hsa-miR-29b 0 0 1
chr12:52057207|52057466 hsa-miR-564 1 0 0
chr12:52057207|52057466 hsa-miR-602 1 0 0
chr12:52057207|52057466 hsa-miR-608 1 0 0
chr12:52057207|52057466 hsa-miR-762 1 0 0
chr12:52057207|52057466 hsa-miR-765 1 0 0
chr12:52057207|52057466 hsa-miR-1469 1 0 0
chr12:52057207|52057466 hsa-miR-2861 1 0 0
chr12:52057207|52057466 hsa-miR-3147 1 0 0
chr12:52057207|52057466 hsa-miR-3154 1 0 0
chr12:52057207|52057466 hsa-miR-4253 1 0 0
chr12:52057207|52057466 hsa-miR-4270 1 0 0
chr12:52057207|52057466 hsa-miR-3665 1 0 0
chr12:52057207|52057466 hsa-miR-3907 1 0 0
chr12:52057207|52057466 hsa-miR-3936 1 0 0
chr12:52057207|52057466 hsa-miR-3937 1 0 0
chr12:52057207|52057466 hsa-miR-4462 1 0 0
chr12:52057207|52057466 hsa-miR-4492 1 0 0
chr12:52057207|52057466 hsa-miR-4498 1 0 0
chr12:52057207|52057466 hsa-miR-4505 1 0 0
chr12:52057207|52057466 hsa-miR-4507 1 0 0
chr12:52057207|52057466 hsa-miR-4508 1 0 0
chr12:52057207|52057466 hsa-miR-4514 1 0 0
chr12:52057207|52057466 hsa-miR-1587 1 0 0
chr12:52057207|52057466 hsa-miR-4634 1 0 0
chr12:52057207|52057466 hsa-miR-4651 1 0 0
chr12:52057207|52057466 hsa-miR-4656 1 0 0
chr12:52057207|52057466 hsa-miR-4692 1 0 0
chr12:52057207|52057466 hsa-miR-4706 1 0 0
chr12:52057207|52057466 hsa-miR-4736 1 0 0
chr12:52057207|52057466 hsa-miR-4741 1 0 0
chr12:52057207|52057466 hsa-miR-5090 1 0 0
chr12:52057207|52057466 hsa-miR-5192 1 0 0
chr12:52057207|52057466 hsa-miR-5787 1 0 0
chr12:52057207|52057466 hsa-miR-6085 1 0 0
chr12:52057207|52057466 hsa-miR-6090 1 0 0
chr12:52057207|52057466 hsa-miR-8060 1 0 0
chr12:52057207|52057466 hsa-miR-8073 1 0 0
chr12:52057207|52057466 hsa-miR-6765-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6861-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6894-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6799-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6880-5p 1 0 0
chr12:52057207|52057466 hsa-miR-7847-3p 1 0 0
chr12:52057207|52057466 hsa-miR-4722-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6727-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6806-5p 1 0 0
chr12:52057207|52057466 hsa-miR-4655-5p 1 0 0
chr12:52057207|52057466 hsa-miR-197-5p 1 0 0
chr12:52057207|52057466 hsa-miR-5589-5p 1 0 0
chr12:52057207|52057466 hsa-miR-3605-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6716-5p 1 0 0
chr12:52057207|52057466 hsa-miR-1292-5p 1 0 0
chr12:52057207|52057466 hsa-miR-3180-3p 1 0 0
chr12:52057207|52057466 hsa-miR-185-3p 1 0 0
chr12:52057207|52057466 hsa-miR-6732-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6805-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6798-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6782-5p 1 0 0
chr12:52057207|52057466 hsa-miR-5006-5p 1 0 0
chr12:52057207|52057466 hsa-miR-1228-5p 1 0 0
chr12:52057207|52057466 hsa-miR-296-3p 1 0 0
chr12:52057207|52057466 hsa-miR-6823-5p 1 0 0
chr12:52057207|52057466 hsa-miR-4446-3p 1 0 0
chr12:52057207|52057466 hsa-miR-937-5p 1 0 0
chr12:52057207|52057466 hsa-miR-5010-5p 1 0 0
chr12:52057207|52057466 hsa-miR-3922-5p 1 0 0
chr12:52057207|52057466 hsa-miR-423-5p 1 0 0
chr12:52057207|52057466 hsa-miR-1225-5p 1 0 0
chr12:52057207|52057466 hsa-miR-584-3p 1 0 0
chr12:52057207|52057466 hsa-miR-744-5p 1 0 0
chr12:52057207|52057466 hsa-miR-2277-5p 1 0 0
chr12:52057207|52057466 hsa-miR-10400-5p 1 0 0
chr12:52057207|52057466 hsa-miR-4763-3p 1 0 0
chr12:52057207|52057466 hsa-miR-6787-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6816-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6893-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6775-5p 1 0 0
chr12:52057207|52057466 hsa-miR-5001-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6743-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6756-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6803-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6813-5p 1 0 0
chr12:52057207|52057466 hsa-miR-1249-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6751-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6774-5p 1 0 0
chr12:52057207|52057466 hsa-miR-7111-5p 1 0 0
chr12:52057207|52057466 hsa-miR-3620-5p 1 0 0
chr12:52057207|52057466 hsa-miR-5189-5p 1 0 0
chr12:52057207|52057466 hsa-miR-5196-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6780b-5p 1 0 0
chr12:52057207|52057466 hsa-miR-10396a-5p 1 0 0
chr12:52057207|52057466 hsa-miR-10396b-5p 1 0 0
chr12:52057207|52057466 hsa-miR-10526-3p 1 0 0
chr12:52057207|52057466 hsa-miR-1237-5p 1 0 0
chr12:52057207|52057466 hsa-miR-1909-3p 1 0 0
chr12:52057207|52057466 hsa-miR-328-5p 1 0 0
chr12:52057207|52057466 hsa-miR-4649-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6729-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6735-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6738-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6846-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6848-5p 1 0 0
chr12:52057207|52057466 hsa-miR-3187-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6831-5p 1 0 0
chr12:52057207|52057466 hsa-miR-10394-3p 1 0 0
chr12:52057207|52057466 hsa-miR-6511a-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6511b-5p 1 0 0
chr12:52057207|52057466 hsa-miR-3940-5p 1 0 0
chr12:52057207|52057466 hsa-miR-4747-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6750-5p 1 0 0
chr12:52057207|52057466 hsa-miR-3184-5p 1 0 0
chr12:52057207|52057466 hsa-miR-6724-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:52057207|52057466
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MPGLSQARASSSSAQAWCYTGCSVPVASGTGLTVSWPSQG
Nucleotide Sequence CTGCCAGGTCTAAGCCAGGCGAGGGCAAGCTCATCTTCTGCTCAGGCCTGGTGCTACACCGGCTGCAGTGTGCCCGTGGCTTCGGGGACTGGATTGACAGTATCCTGGCCTTCTCAAGGT
CircID chr12:52057207|52057466
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSAQPLSLIHLPVNHPDRSSCPSACQV
Nucleotide Sequence CTGTCTGCCCAGCCCCTTTCCCTGATACACCTGCCTGTGAACCACCCTGATCGCTCTTCGTGCCCATCTGCCTGCCAGGTCTAA
CircID chr12:52057207|52057466
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MIALRAHLPARSKPGEGKLIFCSGLVLHRLQCARGFGDWIDSILAFSRS
Nucleotide Sequence CTGATCGCTCTTCGTGCCCATCTGCCTGCCAGGTCTAAGCCAGGCGAGGGCAAGCTCATCTTCTGCTCAGGCCTGGTGCTACACCGGCTGCAGTGTGCCCGTGGCTTCGGGGACTGGATTGACAGTATCCTGGCCTTCTCAAGGTCC
CircID chr12:52057207|52057466
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MGTKSDQGGSQAGVSGKGAGQTVSGSHLYARRRMKSSRKADSSN
Nucleotide Sequence ATGGGCACGAAGAGCGATCAGGGTGGTTCACAGGCAGGTGTATCAGGGAAAGGGGCTGGGCAGACAGTCAGTGGCTCTCACCTGTACGCCAGGCGGAGGATGAAGAGCTCCAGGAAGGCCGACTCCAGCAAC
CircID chr12:52057207|52057466
ORF Type ORF5
Protein Length 68
Nucleotide Length 207
Protein Sequence MSIQSPKPRAHCSRCSTRPEQKMSLPSPGLDLAGRWARRAIRVVHRQVYQGKGLGRQSVALTCTPGGG
Nucleotide Sequence CTGTCAATCCAGTCCCCGAAGCCACGGGCACACTGCAGCCGGTGTAGCACCAGGCCTGAGCAGAAGATGAGCTTGCCCTCGCCTGGCTTAGACCTGGCAGGCAGATGGGCACGAAGAGCGATCAGGGTGGTTCACAGGCAGGTGTATCAGGGAAAGGGGCTGGGCAGACAGTCAGTGGCTCTCACCTGTACGCCAGGCGGAGGATGA
CircID chr12:52057207|52057466
ORF Type ORF6
Protein Length 28
Nucleotide Length 87
Protein Sequence MRRPGYCQSSPRSHGHTAAGVAPGLSRR
Nucleotide Sequence TTGAGAAGGCCAGGATACTGTCAATCCAGTCCCCGAAGCCACGGGCACACTGCAGCCGGTGTAGCACCAGGCCTGAGCAGAAGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab