CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52237570|52238724
Strand +
CircType exon
Host Gene ENSG00000135480.13;
Algorism CIRI2;
Sequence CTTGGCCTCCAGCTCCACCTTGCTCATGTAGGCAGCATCCACATCCCACAGGACAGGCTGTGCAGACTTCCTCTTGGACAGCTCAGGCAGGCCTTGGCCAGAGGTCCCCATGGGCTGCTCAGGTGAGAGGATCCTGTGGTCCTTTGTCCCATGTTTTCAGACAACCCTCCTCGAGCCTGTCTTTCCCACTCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52237570|52238724 hsa-miR-484 0 0 1
chr12:52237570|52238724 hsa-miR-558 0 0 1
chr12:52237570|52238724 hsa-miR-570-5p 0 0 1
chr12:52237570|52238724 hsa-miR-570-3p 0 0 1
chr12:52237570|52238724 hsa-miR-611 0 0 1
chr12:52237570|52238724 hsa-miR-632 0 0 1
chr12:52237570|52238724 hsa-miR-650 0 0 1
chr12:52237570|52238724 hsa-miR-1229-5p 0 0 1
chr12:52237570|52238724 hsa-miR-1229-3p 0 0 1
chr12:52237570|52238724 hsa-miR-1231 0 0 1
chr12:52237570|52238724 hsa-miR-296-3p 0 1 1
chr12:52237570|52238724 hsa-miR-140-3p 0 1 1
chr12:52237570|52238724 hsa-miR-1302 0 0 1
chr12:52237570|52238724 hsa-miR-151-5p 0 0 1
chr12:52237570|52238724 hsa-miR-453 0 0 1
chr12:52237570|52238724 hsa-miR-1201 0 0 1
chr12:52237570|52238724 hsa-miR-612 0 1 0
chr12:52237570|52238724 hsa-miR-638 1 0 0
chr12:52237570|52238724 hsa-miR-641 0 1 0
chr12:52237570|52238724 hsa-miR-658 1 0 0
chr12:52237570|52238724 hsa-miR-1538 1 0 0
chr12:52237570|52238724 hsa-miR-3125 0 1 0
chr12:52237570|52238724 hsa-miR-3131 1 0 0
chr12:52237570|52238724 hsa-miR-3153 1 0 0
chr12:52237570|52238724 hsa-miR-4298 1 1 0
chr12:52237570|52238724 hsa-miR-4271 1 0 0
chr12:52237570|52238724 hsa-miR-3911 1 0 0
chr12:52237570|52238724 hsa-miR-3916 0 1 0
chr12:52237570|52238724 hsa-miR-4421 1 0 0
chr12:52237570|52238724 hsa-miR-4475 0 1 0
chr12:52237570|52238724 hsa-miR-4525 1 1 0
chr12:52237570|52238724 hsa-miR-4641 0 1 0
chr12:52237570|52238724 hsa-miR-4651 1 0 0
chr12:52237570|52238724 hsa-miR-4654 1 1 0
chr12:52237570|52238724 hsa-miR-4657 0 1 0
chr12:52237570|52238724 hsa-miR-4689 1 0 0
chr12:52237570|52238724 hsa-miR-4741 1 1 0
chr12:52237570|52238724 hsa-miR-5572 1 0 0
chr12:52237570|52238724 hsa-miR-6090 1 0 0
chr12:52237570|52238724 hsa-miR-8085 1 0 0
chr12:52237570|52238724 hsa-miR-12114 0 1 0
chr12:52237570|52238724 hsa-miR-12115 0 1 0
chr12:52237570|52238724 hsa-miR-12125 0 1 0
chr12:52237570|52238724 hsa-miR-6747-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6857-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6728-5p 1 0 0
chr12:52237570|52238724 hsa-miR-7114-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6515-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6880-5p 0 1 0
chr12:52237570|52238724 hsa-miR-769-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6741-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6742-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6748-5p 0 1 0
chr12:52237570|52238724 hsa-miR-6772-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6793-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6796-5p 1 1 0
chr12:52237570|52238724 hsa-miR-6874-5p 0 1 0
chr12:52237570|52238724 hsa-miR-30b-3p 1 0 0
chr12:52237570|52238724 hsa-miR-4763-5p 0 1 0
chr12:52237570|52238724 hsa-miR-4640-5p 1 0 0
chr12:52237570|52238724 hsa-miR-4764-5p 0 1 0
chr12:52237570|52238724 hsa-miR-937-5p 1 0 0
chr12:52237570|52238724 hsa-miR-7156-3p 0 1 0
chr12:52237570|52238724 hsa-miR-3191-3p 1 0 0
chr12:52237570|52238724 hsa-miR-6811-3p 1 0 0
chr12:52237570|52238724 hsa-miR-4661-3p 0 1 0
chr12:52237570|52238724 hsa-miR-6814-5p 1 0 0
chr12:52237570|52238724 hsa-miR-3177-3p 1 0 0
chr12:52237570|52238724 hsa-miR-4524b-3p 0 1 0
chr12:52237570|52238724 hsa-miR-1233-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6778-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6812-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6752-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6756-5p 1 1 0
chr12:52237570|52238724 hsa-miR-6851-5p 1 0 0
chr12:52237570|52238724 hsa-miR-7107-5p 1 0 0
chr12:52237570|52238724 hsa-miR-7110-5p 1 0 0
chr12:52237570|52238724 hsa-miR-10401-5p 1 0 0
chr12:52237570|52238724 hsa-miR-1249-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6780a-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6797-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6808-5p 1 0 0
chr12:52237570|52238724 hsa-miR-7111-5p 1 0 0
chr12:52237570|52238724 hsa-miR-5196-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6780b-5p 1 0 0
chr12:52237570|52238724 hsa-miR-4685-5p 0 1 0
chr12:52237570|52238724 hsa-miR-4725-3p 1 0 0
chr12:52237570|52238724 hsa-miR-4745-5p 1 0 0
chr12:52237570|52238724 hsa-miR-4749-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6848-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6858-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6889-5p 1 0 0
chr12:52237570|52238724 hsa-miR-1238-5p 0 1 0
chr12:52237570|52238724 hsa-miR-4758-5p 1 1 0
chr12:52237570|52238724 hsa-miR-4769-5p 1 0 0
chr12:52237570|52238724 hsa-miR-3940-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6731-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6856-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6855-5p 1 0 0
chr12:52237570|52238724 hsa-miR-4747-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6891-5p 1 0 0
chr12:52237570|52238724 hsa-miR-6766-5p 1 0 0
chr12:52237570|52238724 hsa-miR-3622a-3p 0 1 0
chr12:52237570|52238724 hsa-miR-4690-3p 0 1 0
chr12:52237570|52238724 hsa-miR-3622b-3p 0 1 0
chr12:52237570|52238724 hsa-miR-6733-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:52237570|52238724
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MDSSGRPWPEVPMGCSGERILWSFVPCFQTTLLEPVFPTH
Nucleotide Sequence TTGGACAGCTCAGGCAGGCCTTGGCCAGAGGTCCCCATGGGCTGCTCAGGTGAGAGGATCCTGTGGTCCTTTGTCCCATGTTTTCAGACAACCCTCCTCGAGCCTGTCTTTCCCACTCAC
CircID chr12:52237570|52238724
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MGTSGQGLPELSKRKSAQPVLWDVDAAYMSKVELEAK
Nucleotide Sequence ATGGGGACCTCTGGCCAAGGCCTGCCTGAGCTGTCCAAGAGGAAGTCTGCACAGCCTGTCCTGTGGGATGTGGATGCTGCCTACATGAGCAAGGTGGAGCTGGAGGCCAAG
CircID chr12:52237570|52238724
ORF Type ORF3
Protein Length 46
Nucleotide Length 141
Protein Sequence MSENMGQRTTGSSHLSSPWGPLAKACLSCPRGSLHSLSCGMWMLPT
Nucleotide Sequence TTGTCTGAAAACATGGGACAAAGGACCACAGGATCCTCTCACCTGAGCAGCCCATGGGGACCTCTGGCCAAGGCCTGCCTGAGCTGTCCAAGAGGAAGTCTGCACAGCCTGTCCTGTGGGATGTGGATGCTGCCTACATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab