CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52243939|52244071
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGCACAGGCTGAGCTGCCCTGGCCACACACTACTCAGCCAGGGCTGGGGGCCCTTCCCCCATCAACACCTCCAACCCCAGCTTCCAGCAAAGCTCATCCTCCCAGGCAGTCTCTCATCTGAGACCCGTGCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52243939|52244071 hsa-miR-564 0 1 1
chr12:52243939|52244071 hsa-miR-625-5p 0 0 1
chr12:52243939|52244071 hsa-miR-625-3p 0 0 1
chr12:52243939|52244071 hsa-miR-648 0 0 1
chr12:52243939|52244071 hsa-miR-661 0 1 1
chr12:52243939|52244071 hsa-miR-663b 0 0 1
chr12:52243939|52244071 hsa-miR-1287-5p 0 0 1
chr12:52243939|52244071 hsa-miR-1287-3p 0 0 1
chr12:52243939|52244071 hsa-miR-1255a 0 0 1
chr12:52243939|52244071 hsa-miR-1275 0 1 1
chr12:52243939|52244071 hsa-miR-671-5p 1 0 1
chr12:52243939|52244071 hsa-miR-296-5p 0 0 1
chr12:52243939|52244071 hsa-miR-361-3p 0 0 1
chr12:52243939|52244071 hsa-miR-556-5p 0 0 1
chr12:52243939|52244071 hsa-miR-142-3p 0 0 1
chr12:52243939|52244071 hsa-miR-1255b 0 0 1
chr12:52243939|52244071 hsa-miR-644 0 0 1
chr12:52243939|52244071 hsa-miR-1254 0 0 1
chr12:52243939|52244071 hsa-miR-768-5p 0 0 1
chr12:52243939|52244071 hsa-miR-147 0 0 1
chr12:52243939|52244071 hsa-miR-608 1 0 0
chr12:52243939|52244071 hsa-miR-637 1 0 0
chr12:52243939|52244071 hsa-miR-650 1 0 0
chr12:52243939|52244071 hsa-miR-920 1 0 0
chr12:52243939|52244071 hsa-miR-940 1 0 0
chr12:52243939|52244071 hsa-miR-320e 0 1 0
chr12:52243939|52244071 hsa-miR-4300 1 0 0
chr12:52243939|52244071 hsa-miR-4330 0 1 0
chr12:52243939|52244071 hsa-miR-3652 1 0 0
chr12:52243939|52244071 hsa-miR-4429 1 0 0
chr12:52243939|52244071 hsa-miR-4443 1 0 0
chr12:52243939|52244071 hsa-miR-3135b 1 0 0
chr12:52243939|52244071 hsa-miR-4463 1 0 0
chr12:52243939|52244071 hsa-miR-3689c 0 1 0
chr12:52243939|52244071 hsa-miR-4487 1 0 0
chr12:52243939|52244071 hsa-miR-2392 1 0 0
chr12:52243939|52244071 hsa-miR-4507 1 0 0
chr12:52243939|52244071 hsa-miR-4525 1 1 0
chr12:52243939|52244071 hsa-miR-4534 1 0 0
chr12:52243939|52244071 hsa-miR-4651 1 0 0
chr12:52243939|52244071 hsa-miR-4656 1 0 0
chr12:52243939|52244071 hsa-miR-4706 1 0 0
chr12:52243939|52244071 hsa-miR-4739 1 0 0
chr12:52243939|52244071 hsa-miR-5572 1 0 0
chr12:52243939|52244071 hsa-miR-5787 1 0 0
chr12:52243939|52244071 hsa-miR-6079 1 1 0
chr12:52243939|52244071 hsa-miR-6086 1 0 0
chr12:52243939|52244071 hsa-miR-8077 0 1 0
chr12:52243939|52244071 hsa-miR-8089 1 0 0
chr12:52243939|52244071 hsa-miR-4435 0 1 0
chr12:52243939|52244071 hsa-miR-7106-5p 1 1 0
chr12:52243939|52244071 hsa-miR-6894-5p 1 1 0
chr12:52243939|52244071 hsa-miR-125a-3p 0 1 0
chr12:52243939|52244071 hsa-miR-6799-5p 1 0 0
chr12:52243939|52244071 hsa-miR-3622a-5p 0 1 0
chr12:52243939|52244071 hsa-miR-7851-3p 1 1 0
chr12:52243939|52244071 hsa-miR-6089 1 0 0
chr12:52243939|52244071 hsa-miR-3192-5p 1 1 0
chr12:52243939|52244071 hsa-miR-6880-5p 1 0 0
chr12:52243939|52244071 hsa-miR-4722-5p 1 0 0
chr12:52243939|52244071 hsa-miR-3064-5p 0 1 0
chr12:52243939|52244071 hsa-miR-6741-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6776-5p 1 0 0
chr12:52243939|52244071 hsa-miR-7108-5p 0 1 0
chr12:52243939|52244071 hsa-miR-3605-5p 0 1 0
chr12:52243939|52244071 hsa-miR-185-3p 1 0 0
chr12:52243939|52244071 hsa-miR-6732-5p 1 0 0
chr12:52243939|52244071 hsa-miR-486-3p 0 1 0
chr12:52243939|52244071 hsa-miR-6874-5p 1 0 0
chr12:52243939|52244071 hsa-miR-30b-3p 0 1 0
chr12:52243939|52244071 hsa-miR-7109-5p 0 1 0
chr12:52243939|52244071 hsa-miR-4738-3p 1 0 0
chr12:52243939|52244071 hsa-miR-193b-5p 1 0 0
chr12:52243939|52244071 hsa-miR-4640-5p 0 1 0
chr12:52243939|52244071 hsa-miR-296-3p 1 0 0
chr12:52243939|52244071 hsa-miR-4787-5p 1 0 0
chr12:52243939|52244071 hsa-miR-149-3p 1 0 0
chr12:52243939|52244071 hsa-miR-4684-3p 1 0 0
chr12:52243939|52244071 hsa-miR-6828-5p 1 0 0
chr12:52243939|52244071 hsa-miR-7160-3p 0 1 0
chr12:52243939|52244071 hsa-miR-6869-5p 0 1 0
chr12:52243939|52244071 hsa-miR-2277-5p 1 0 0
chr12:52243939|52244071 hsa-miR-4712-3p 0 1 0
chr12:52243939|52244071 hsa-miR-1233-5p 1 0 0
chr12:52243939|52244071 hsa-miR-3689b-3p 0 1 0
chr12:52243939|52244071 hsa-miR-4763-3p 1 0 0
chr12:52243939|52244071 hsa-miR-6778-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6787-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6812-5p 1 0 0
chr12:52243939|52244071 hsa-miR-5001-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6726-5p 1 1 0
chr12:52243939|52244071 hsa-miR-6737-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6752-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6754-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6756-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6803-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6819-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6842-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6851-5p 1 1 0
chr12:52243939|52244071 hsa-miR-7110-5p 1 0 0
chr12:52243939|52244071 hsa-miR-10401-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6722-3p 1 0 0
chr12:52243939|52244071 hsa-miR-6751-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6779-5p 1 1 0
chr12:52243939|52244071 hsa-miR-6780a-5p 0 1 0
chr12:52243939|52244071 hsa-miR-4728-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6780b-5p 0 1 0
chr12:52243939|52244071 hsa-miR-3689a-3p 0 1 0
chr12:52243939|52244071 hsa-miR-4632-5p 0 1 0
chr12:52243939|52244071 hsa-miR-4725-3p 0 1 0
chr12:52243939|52244071 hsa-miR-6795-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6883-5p 1 0 0
chr12:52243939|52244071 hsa-miR-939-5p 1 0 0
chr12:52243939|52244071 hsa-miR-3199 0 1 0
chr12:52243939|52244071 hsa-miR-3940-5p 1 0 0
chr12:52243939|52244071 hsa-miR-7843-5p 0 1 0
chr12:52243939|52244071 hsa-miR-6855-5p 1 1 0
chr12:52243939|52244071 hsa-miR-4646-5p 1 0 0
chr12:52243939|52244071 hsa-miR-4747-5p 0 1 0
chr12:52243939|52244071 hsa-miR-3184-5p 0 1 0
chr12:52243939|52244071 hsa-miR-3689d 0 1 0
chr12:52243939|52244071 hsa-miR-769-3p 1 0 0
chr12:52243939|52244071 hsa-miR-9851-5p 1 0 0
chr12:52243939|52244071 hsa-miR-320a-3p 1 0 0
chr12:52243939|52244071 hsa-miR-320b 1 0 0
chr12:52243939|52244071 hsa-miR-320c 1 0 0
chr12:52243939|52244071 hsa-miR-3928-5p 1 0 0
chr12:52243939|52244071 hsa-miR-6884-5p 1 0 0
chr12:52243939|52244071 hsa-miR-320d 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:52243939|52244071
ORF Type ORF1
Protein Length 44
Nucleotide Length 132
Protein Sequence LHRLSCPGHTLLSQGWGPFPHQHLQPQLPAKLILPGSLSSETRA
Nucleotide Sequence CTGCACAGGCTGAGCTGCCCTGGCCACACACTACTCAGCCAGGGCTGGGGGCCCTTCCCCCATCAACACCTCCAACCCCAGCTTCCAGCAAAGCTCATCCTCCCAGGCAGTCTCTCATCTGAGACCCGTGCC
CircID chr12:52243939|52244071
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MATHYSARAGGPSPINTSNPSFQQSSSSQAVSHLRPVP
Nucleotide Sequence CTGGCCACACACTACTCAGCCAGGGCTGGGGGCCCTTCCCCCATCAACACCTCCAACCCCAGCTTCCAGCAAAGCTCATCCTCCCAGGCAGTCTCTCATCTGAGACCCGTGCCC
CircID chr12:52243939|52244071
ORF Type ORF3
Protein Length 35
Nucleotide Length 108
Protein Sequence MPWPHTTQPGLGALPPSTPPTPASSKAHPPRQSLI
Nucleotide Sequence CTGCCCTGGCCACACACTACTCAGCCAGGGCTGGGGGCCCTTCCCCCATCAACACCTCCAACCCCAGCTTCCAGCAAAGCTCATCCTCCCAGGCAGTCTCTCATCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab