CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52245630|52245847
Strand +
CircType exon
Host Gene ENSG00000135480.13;
Algorism CIRI2;
Sequence CTGCCCACTGAGCTTCACACTCCATGGTCTTTCCTTCTAGAAGGTCATCTCATTGAAGGCAAAGAGGCAAGCATCAGCTCTGTGTTCCCTGCATCCCCACACCCAGTGCCCTGCAGAGGAGGGGCATACAGGAAATGCTTGTAAATGGATGAATGTCAAGCCCCAAACCCCACGGAGCCCTAGAAGCATCCCCTTTCCAGGTTCCTTGTCCTCACCGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52245630|52245847 hsa-miR-181c-5p 0 0 1
chr12:52245630|52245847 hsa-miR-181c-3p 0 0 1
chr12:52245630|52245847 hsa-miR-122-5p 0 0 1
chr12:52245630|52245847 hsa-miR-122-3p 0 0 1
chr12:52245630|52245847 hsa-miR-143-5p 0 0 1
chr12:52245630|52245847 hsa-miR-143-3p 0 0 1
chr12:52245630|52245847 hsa-miR-489-5p 0 0 1
chr12:52245630|52245847 hsa-miR-489-3p 0 0 1
chr12:52245630|52245847 hsa-miR-181d-5p 0 0 1
chr12:52245630|52245847 hsa-miR-181d-3p 0 0 1
chr12:52245630|52245847 hsa-miR-591 0 0 1
chr12:52245630|52245847 hsa-miR-609 0 0 1
chr12:52245630|52245847 hsa-miR-619-5p 0 0 1
chr12:52245630|52245847 hsa-miR-619-3p 0 0 1
chr12:52245630|52245847 hsa-miR-1205 0 0 1
chr12:52245630|52245847 hsa-miR-1252-5p 0 0 1
chr12:52245630|52245847 hsa-miR-1252-3p 0 0 1
chr12:52245630|52245847 hsa-miR-127-5p 0 0 1
chr12:52245630|52245847 hsa-miR-486-5p 0 0 1
chr12:52245630|52245847 hsa-miR-491-5p 0 0 1
chr12:52245630|52245847 hsa-miR-1224-5p 0 0 1
chr12:52245630|52245847 hsa-miR-1184 0 0 1
chr12:52245630|52245847 hsa-miR-574-5p 0 0 1
chr12:52245630|52245847 hsa-miR-490-3p 0 0 1
chr12:52245630|52245847 hsa-miR-875-3p 0 0 1
chr12:52245630|52245847 hsa-miR-518d-5p 0 0 1
chr12:52245630|52245847 hsa-miR-519b-5p 0 0 1
chr12:52245630|52245847 hsa-miR-519c-5p 0 0 1
chr12:52245630|52245847 hsa-miR-520c-5p 0 0 1
chr12:52245630|52245847 hsa-miR-181a 0 0 1
chr12:52245630|52245847 hsa-miR-181b 0 0 1
chr12:52245630|52245847 hsa-miR-526a 0 0 1
chr12:52245630|52245847 hsa-miR-608 1 0 0
chr12:52245630|52245847 hsa-miR-612 1 0 0
chr12:52245630|52245847 hsa-miR-638 1 0 0
chr12:52245630|52245847 hsa-miR-760 1 0 0
chr12:52245630|52245847 hsa-miR-921 1 0 0
chr12:52245630|52245847 hsa-miR-5572 1 0 0
chr12:52245630|52245847 hsa-miR-6132 1 0 0
chr12:52245630|52245847 hsa-miR-8089 1 0 0
chr12:52245630|52245847 hsa-miR-6747-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6861-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6741-5p 1 0 0
chr12:52245630|52245847 hsa-miR-432-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6796-5p 1 0 0
chr12:52245630|52245847 hsa-miR-23a-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6514-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6810-5p 1 0 0
chr12:52245630|52245847 hsa-miR-7855-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6786-5p 1 0 0
chr12:52245630|52245847 hsa-miR-1226-5p 1 0 0
chr12:52245630|52245847 hsa-miR-193b-5p 1 0 0
chr12:52245630|52245847 hsa-miR-3162-5p 1 0 0
chr12:52245630|52245847 hsa-miR-3177-3p 1 0 0
chr12:52245630|52245847 hsa-miR-6812-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6775-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6726-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6752-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6756-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6803-5p 1 0 0
chr12:52245630|52245847 hsa-miR-7110-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6722-3p 1 0 0
chr12:52245630|52245847 hsa-miR-5196-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6836-5p 1 0 0
chr12:52245630|52245847 hsa-miR-328-5p 1 0 0
chr12:52245630|52245847 hsa-miR-4632-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6846-5p 1 0 0
chr12:52245630|52245847 hsa-miR-939-5p 1 0 0
chr12:52245630|52245847 hsa-miR-6855-5p 1 0 0
chr12:52245630|52245847 hsa-miR-3679-5p 1 0 0
chr12:52245630|52245847 hsa-miR-4646-5p 1 0 0
chr12:52245630|52245847 hsa-miR-541-3p 1 0 0
chr12:52245630|52245847 hsa-miR-6790-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:52245630|52245847
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence LPTELHTPWSFLLEGHLIEGKEASISSVFPASPHPVPCRGGAYRKCL
Nucleotide Sequence CTGCCCACTGAGCTTCACACTCCATGGTCTTTCCTTCTAGAAGGTCATCTCATTGAAGGCAAAGAGGCAAGCATCAGCTCTGTGTTCCCTGCATCCCCACACCCAGTGCCCTGCAGAGGAGGGGCATACAGGAAATGCTTGTAA
CircID chr12:52245630|52245847
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MKAKRQASALCSLHPHTQCPAEEGHTGNACKWMNVKPQTPRSPRSIPFPGSLSSP
Nucleotide Sequence TTGAAGGCAAAGAGGCAAGCATCAGCTCTGTGTTCCCTGCATCCCCACACCCAGTGCCCTGCAGAGGAGGGGCATACAGGAAATGCTTGTAAATGGATGAATGTCAAGCCCCAAACCCCACGGAGCCCTAGAAGCATCCCCTTTCCAGGTTCCTTGTCCTCACCG
CircID chr12:52245630|52245847
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MYAPPLQGTGCGDAGNTELMLASLPSMR
Nucleotide Sequence CTGTATGCCCCTCCTCTGCAGGGCACTGGGTGTGGGGATGCAGGGAACACAGAGCTGATGCTTGCCTCTTTGCCTTCAATGAGATGA
CircID chr12:52245630|52245847
ORF Type ORF4
Protein Length 30
Nucleotide Length 93
Protein Sequence MGLDIHPFTSISCMPLLCRALGVGMQGTQS
Nucleotide Sequence TTGGGGCTTGACATTCATCCATTTACAAGCATTTCCTGTATGCCCCTCCTCTGCAGGGCACTGGGTGTGGGGATGCAGGGAACACAGAGCTGA
CircID chr12:52245630|52245847
ORF Type ORF5
Protein Length 50
Nucleotide Length 153
Protein Sequence MLLGLRGVWGLTFIHLQAFPVCPSSAGHWVWGCREHRADACLFAFNEMTF
Nucleotide Sequence ATGCTTCTAGGGCTCCGTGGGGTTTGGGGCTTGACATTCATCCATTTACAAGCATTTCCTGTATGCCCCTCCTCTGCAGGGCACTGGGTGTGGGGATGCAGGGAACACAGAGCTGATGCTTGCCTCTTTGCCTTCAATGAGATGACCTTCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab