CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52516774|52517679
Strand +
CircType exon
Host Gene ENSG00000186081.10;
Algorism CIRI2;
Sequence CTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAGTCCTGGTATCAGACCAAGTATGAGGAGCTGCAGCAGACAGCTGGCCGGCATGGCGATGACCTCCGCAACACCAAGCATGAGATCTCTGAGATGAACCGGATGATCCAGAGGCTGAGAGCCGAGATTGACAATGTCAAGAAACAGTGCGCCAATCTGCAGAACGCCATTGCGGATGCCGAGCAGCGTGGGGAGCTGGCCCTCAAGGATGCCAGGAACAAGCTGGCCGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52516774|52517679 hsa-miR-192-5p 0 0 1
chr12:52516774|52517679 hsa-miR-192-3p 0 0 1
chr12:52516774|52517679 hsa-miR-182-5p 0 0 1
chr12:52516774|52517679 hsa-miR-182-3p 0 0 1
chr12:52516774|52517679 hsa-miR-215-5p 0 0 1
chr12:52516774|52517679 hsa-miR-215-3p 0 0 1
chr12:52516774|52517679 hsa-miR-346 0 0 1
chr12:52516774|52517679 hsa-miR-452-5p 0 0 1
chr12:52516774|52517679 hsa-miR-452-3p 0 0 1
chr12:52516774|52517679 hsa-miR-489-5p 0 0 1
chr12:52516774|52517679 hsa-miR-489-3p 0 0 1
chr12:52516774|52517679 hsa-miR-526b-5p 0 0 1
chr12:52516774|52517679 hsa-miR-526b-3p 0 0 1
chr12:52516774|52517679 hsa-miR-578 0 0 1
chr12:52516774|52517679 hsa-miR-604 0 0 1
chr12:52516774|52517679 hsa-miR-626 0 0 1
chr12:52516774|52517679 hsa-miR-632 0 0 1
chr12:52516774|52517679 hsa-miR-658 0 0 1
chr12:52516774|52517679 hsa-miR-1301-5p 0 0 1
chr12:52516774|52517679 hsa-miR-1301-3p 0 0 1
chr12:52516774|52517679 hsa-miR-890 0 0 1
chr12:52516774|52517679 hsa-miR-1205 0 0 1
chr12:52516774|52517679 hsa-miR-1208 0 0 1
chr12:52516774|52517679 hsa-miR-1307-5p 0 0 1
chr12:52516774|52517679 hsa-miR-1307-3p 0 0 1
chr12:52516774|52517679 hsa-miR-1322 0 0 1
chr12:52516774|52517679 hsa-miR-423-3p 0 0 1
chr12:52516774|52517679 hsa-miR-1184 0 0 1
chr12:52516774|52517679 hsa-miR-671-3p 0 0 1
chr12:52516774|52517679 hsa-miR-362-5p 0 0 1
chr12:52516774|52517679 hsa-miR-544 0 0 1
chr12:52516774|52517679 hsa-miR-638 1 0 0
chr12:52516774|52517679 hsa-miR-1202 1 0 0
chr12:52516774|52517679 hsa-miR-4730 1 0 0
chr12:52516774|52517679 hsa-miR-5092 1 0 0
chr12:52516774|52517679 hsa-miR-4665-3p 1 0 0
chr12:52516774|52517679 hsa-miR-3194-5p 1 0 0
chr12:52516774|52517679 hsa-miR-1226-5p 1 0 0
chr12:52516774|52517679 hsa-miR-1908-3p 1 0 0
chr12:52516774|52517679 hsa-miR-4638-5p 1 0 0
chr12:52516774|52517679 hsa-miR-1199-3p 1 0 0
chr12:52516774|52517679 hsa-miR-10400-5p 1 0 0
chr12:52516774|52517679 hsa-miR-6787-5p 1 0 0
chr12:52516774|52517679 hsa-miR-6722-3p 1 0 0
chr12:52516774|52517679 hsa-miR-4685-5p 1 0 0
chr12:52516774|52517679 hsa-miR-3085-3p 1 0 0
chr12:52516774|52517679 hsa-miR-6876-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:52516774|52517679
ORF Type ORF1
Protein Length 100
Nucleotide Length 300
Protein Sequence LDSIIAEVKAQYEEIANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAE
Nucleotide Sequence CTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAGTCCTGGTATCAGACCAAGTATGAGGAGCTGCAGCAGACAGCTGGCCGGCATGGCGATGACCTCCGCAACACCAAGCATGAGATCTCTGAGATGAACCGGATGATCCAGAGGCTGAGAGCCGAGATTGACAATGTCAAGAAACAGTGCGCCAATCTGCAGAACGCCATTGCGGATGCCGAGCAGCGTGGGGAGCTGGCCCTCAAGGATGCCAGGAACAAGCTGGCCGAG
CircID chr12:52516774|52517679
ORF Type ORF2
Protein Length 49
Nucleotide Length 150
Protein Sequence MRSRPSMRRLPTAAGQKPSPGIRPSMRSCSRQLAGMAMTSATPSMRSLR
Nucleotide Sequence CTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAGTCCTGGTATCAGACCAAGTATGAGGAGCTGCAGCAGACAGCTGGCCGGCATGGCGATGACCTCCGCAACACCAAGCATGAGATCTCTGAGATGA
CircID chr12:52516774|52517679
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MTMSRNSAPICRTPLRMPSSVGSWPSRMPGTSWP
Nucleotide Sequence TTGACAATGTCAAGAAACAGTGCGCCAATCTGCAGAACGCCATTGCGGATGCCGAGCAGCGTGGGGAGCTGGCCCTCAAGGATGCCAGGAACAAGCTGGCCG
CircID chr12:52516774|52517679
ORF Type ORF4
Protein Length 85
Nucleotide Length 255
Protein Sequence MLGIRNGVLQIGALFLDIVNLGSQPLDHPVHLRDLMLGVAEVIAMPASCLLQLLILGLIPGLGFCPAAVGNLLILGLDLSDDAIQ
Nucleotide Sequence CTGCTCGGCATCCGCAATGGCGTTCTGCAGATTGGCGCACTGTTTCTTGACATTGTCAATCTCGGCTCTCAGCCTCTGGATCATCCGGTTCATCTCAGAGATCTCATGCTTGGTGTTGCGGAGGTCATCGCCATGCCGGCCAGCTGTCTGCTGCAGCTCCTCATACTTGGTCTGATACCAGGACTCGGCTTCTGTCCGGCTGCGGTTGGCAATCTCCTCATACTGGGCCTTGACCTCAGCGATGATGCTATCCAG
CircID chr12:52516774|52517679
ORF Type ORF5
Protein Length 69
Nucleotide Length 210
Protein Sequence MFLASLRASSPRCSASAMAFCRLAHCFLTLSISALSLWIIRFISEISCLVLRRSSPCRPAVCCSSSYLV
Nucleotide Sequence TTGTTCCTGGCATCCTTGAGGGCCAGCTCCCCACGCTGCTCGGCATCCGCAATGGCGTTCTGCAGATTGGCGCACTGTTTCTTGACATTGTCAATCTCGGCTCTCAGCCTCTGGATCATCCGGTTCATCTCAGAGATCTCATGCTTGGTGTTGCGGAGGTCATCGCCATGCCGGCCAGCTGTCTGCTGCAGCTCCTCATACTTGGTCTGA
CircID chr12:52516774|52517679
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MSAAAPHTWSDTRTRLLSGCGWQSPHTGP
Nucleotide Sequence CTGTCTGCTGCAGCTCCTCATACTTGGTCTGATACCAGGACTCGGCTTCTGTCCGGCTGCGGTTGGCAATCTCCTCATACTGGGCCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab