CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52517606|52518968
Strand +
CircType exon
Host Gene ENSG00000186081.10;
Algorism CIRI2;
Sequence CTGGTGGAAGACTTCAAGAACAAGTATGAGGATGAAATCAACAAGCGTACCACTGCTGAGAATGAGTTTGTGATGCTGAAGAAGGATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGATGCACTGATGGATGAGATTAACTTCATGAAGATGTTCTTTGATGCGGAGCTGTCCCAGATGCAGACGCATGTCTCTGACACCTCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52517606|52518968 hsa-miR-22-5p 0 0 1
chr12:52517606|52518968 hsa-miR-22-3p 0 0 1
chr12:52517606|52518968 hsa-miR-96-5p 0 0 1
chr12:52517606|52518968 hsa-miR-96-3p 0 0 1
chr12:52517606|52518968 hsa-miR-107 0 0 1
chr12:52517606|52518968 hsa-miR-192-5p 0 0 1
chr12:52517606|52518968 hsa-miR-192-3p 0 0 1
chr12:52517606|52518968 hsa-miR-148a-5p 0 0 1
chr12:52517606|52518968 hsa-miR-148a-3p 0 0 1
chr12:52517606|52518968 hsa-miR-182-5p 0 0 1
chr12:52517606|52518968 hsa-miR-182-3p 0 0 1
chr12:52517606|52518968 hsa-miR-214-5p 0 0 1
chr12:52517606|52518968 hsa-miR-214-3p 0 0 1
chr12:52517606|52518968 hsa-miR-215-5p 0 0 1
chr12:52517606|52518968 hsa-miR-215-3p 0 0 1
chr12:52517606|52518968 hsa-miR-216a-5p 0 0 1
chr12:52517606|52518968 hsa-miR-216a-3p 0 0 1
chr12:52517606|52518968 hsa-miR-152-5p 0 0 1
chr12:52517606|52518968 hsa-miR-152-3p 0 0 1
chr12:52517606|52518968 hsa-miR-150-5p 0 0 1
chr12:52517606|52518968 hsa-miR-150-3p 0 0 1
chr12:52517606|52518968 hsa-miR-185-5p 0 0 1
chr12:52517606|52518968 hsa-miR-185-3p 0 0 1
chr12:52517606|52518968 hsa-miR-148b-5p 0 0 1
chr12:52517606|52518968 hsa-miR-148b-3p 0 0 1
chr12:52517606|52518968 hsa-miR-433-5p 0 0 1
chr12:52517606|52518968 hsa-miR-433-3p 0 0 1
chr12:52517606|52518968 hsa-miR-526b-5p 0 0 1
chr12:52517606|52518968 hsa-miR-526b-3p 0 0 1
chr12:52517606|52518968 hsa-miR-573 0 0 1
chr12:52517606|52518968 hsa-miR-604 0 0 1
chr12:52517606|52518968 hsa-miR-653-5p 0 0 1
chr12:52517606|52518968 hsa-miR-653-3p 0 0 1
chr12:52517606|52518968 hsa-miR-1264 0 0 1
chr12:52517606|52518968 hsa-miR-1271-5p 0 0 1
chr12:52517606|52518968 hsa-miR-1271-3p 0 0 1
chr12:52517606|52518968 hsa-miR-766-5p 0 0 1
chr12:52517606|52518968 hsa-miR-766-3p 0 0 1
chr12:52517606|52518968 hsa-miR-888-5p 0 0 1
chr12:52517606|52518968 hsa-miR-888-3p 0 0 1
chr12:52517606|52518968 hsa-miR-216b-5p 0 0 1
chr12:52517606|52518968 hsa-miR-216b-3p 0 0 1
chr12:52517606|52518968 hsa-miR-922 0 0 1
chr12:52517606|52518968 hsa-miR-940 0 0 1
chr12:52517606|52518968 hsa-miR-1237-5p 0 0 1
chr12:52517606|52518968 hsa-miR-1237-3p 0 0 1
chr12:52517606|52518968 hsa-miR-1205 0 0 1
chr12:52517606|52518968 hsa-miR-1206 0 0 1
chr12:52517606|52518968 hsa-miR-1303 0 0 1
chr12:52517606|52518968 hsa-miR-1248 0 0 1
chr12:52517606|52518968 hsa-miR-1322 0 0 1
chr12:52517606|52518968 hsa-miR-532-3p 0 0 1
chr12:52517606|52518968 hsa-miR-1224-3p 0 0 1
chr12:52517606|52518968 hsa-miR-509-3p 0 0 1
chr12:52517606|52518968 hsa-miR-1302 0 0 1
chr12:52517606|52518968 hsa-miR-362-3p 0 0 1
chr12:52517606|52518968 hsa-miR-1260 0 0 1
chr12:52517606|52518968 hsa-miR-1280 0 0 1
chr12:52517606|52518968 hsa-miR-103 0 0 1
chr12:52517606|52518968 hsa-miR-138 0 0 1
chr12:52517606|52518968 hsa-miR-329 0 0 1
chr12:52517606|52518968 hsa-miR-220a 0 0 1
chr12:52517606|52518968 hsa-miR-601 1 0 0
chr12:52517606|52518968 hsa-miR-4281 1 0 0
chr12:52517606|52518968 hsa-miR-8089 1 0 0
chr12:52517606|52518968 hsa-miR-10226 1 0 0
chr12:52517606|52518968 hsa-miR-12116 1 0 0
chr12:52517606|52518968 hsa-miR-212-5p 1 0 0
chr12:52517606|52518968 hsa-miR-4677-5p 1 0 0
chr12:52517606|52518968 hsa-miR-191-3p 1 0 0
chr12:52517606|52518968 hsa-miR-7110-3p 1 0 0
chr12:52517606|52518968 hsa-miR-4697-3p 1 0 0
chr12:52517606|52518968 hsa-miR-656-5p 1 0 0
chr12:52517606|52518968 hsa-miR-486-3p 1 0 0
chr12:52517606|52518968 hsa-miR-4713-5p 1 0 0
chr12:52517606|52518968 hsa-miR-6884-3p 1 0 0
chr12:52517606|52518968 hsa-miR-939-3p 1 0 0
chr12:52517606|52518968 hsa-miR-1226-5p 1 0 0
chr12:52517606|52518968 hsa-miR-6878-3p 1 0 0
chr12:52517606|52518968 hsa-miR-5196-3p 1 0 0
chr12:52517606|52518968 hsa-miR-6739-3p 1 0 0
chr12:52517606|52518968 hsa-miR-1307-3p 1 0 0
chr12:52517606|52518968 hsa-miR-4638-5p 1 0 0
chr12:52517606|52518968 hsa-miR-6813-3p 1 0 0
chr12:52517606|52518968 hsa-miR-7112-3p 1 0 0
chr12:52517606|52518968 hsa-miR-4671-3p 1 0 0
chr12:52517606|52518968 hsa-miR-6885-3p 1 0 0
chr12:52517606|52518968 hsa-miR-10400-5p 1 0 0
chr12:52517606|52518968 hsa-miR-3085-5p 1 0 0
chr12:52517606|52518968 hsa-miR-6862-3p 1 0 0
chr12:52517606|52518968 hsa-miR-504-5p 1 0 0
chr12:52517606|52518968 hsa-miR-6744-3p 1 0 0
chr12:52517606|52518968 hsa-miR-323b-5p 1 0 0
chr12:52517606|52518968 hsa-miR-6500-5p 1 0 0
chr12:52517606|52518968 hsa-miR-10397-5p 1 0 0
chr12:52517606|52518968 hsa-miR-6843-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:52517606|52518968
ORF Type ORF1
Protein Length 109
Nucleotide Length 327
Protein Sequence LVEDFKNKYEDEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFMKMFFDAELSQMQTHVSDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIANRSRTEAE
Nucleotide Sequence CTGGTGGAAGACTTCAAGAACAAGTATGAGGATGAAATCAACAAGCGTACCACTGCTGAGAATGAGTTTGTGATGCTGAAGAAGGATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGATGCACTGATGGATGAGATTAACTTCATGAAGATGTTCTTTGATGCGGAGCTGTCCCAGATGCAGACGCATGTCTCTGACACCTCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAG
CircID chr12:52517606|52518968
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MMRSCPRCRRMSLTPQWSSPWTTTATWTWIASSLRSRPSMRRLPTAAGQKPS
Nucleotide Sequence TTGATGCGGAGCTGTCCCAGATGCAGACGCATGTCTCTGACACCTCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAGT
CircID chr12:52517606|52518968
ORF Type ORF3
Protein Length 70
Nucleotide Length 213
Protein Sequence MRLAISSYWALTSAMMLSRSRLRLLSMERTTEVSETCVCIWDSSASKNIFMKLISSISASTLASSSTLFM
Nucleotide Sequence CTGCGGTTGGCAATCTCCTCATACTGGGCCTTGACCTCAGCGATGATGCTATCCAGGTCCAGGTTGCGGTTGTTGTCCATGGAGAGGACCACTGAGGTGTCAGAGACATGCGTCTGCATCTGGGACAGCTCCGCATCAAAGAACATCTTCATGAAGTTAATCTCATCCATCAGTGCATCAACCTTGGCCTCCAGCTCCACCTTGTTCATGTAG
CircID chr12:52517606|52518968
ORF Type ORF4
Protein Length 68
Nucleotide Length 204
Protein Sequence MRLHLGQLRIKEHLHEVNLIHQCINLGLQLHLVHVGSIYILLQHHKLILSSGTLVDFILILVLEVFHQ
Nucleotide Sequence ATGCGTCTGCATCTGGGACAGCTCCGCATCAAAGAACATCTTCATGAAGTTAATCTCATCCATCAGTGCATCAACCTTGGCCTCCAGCTCCACCTTGTTCATGTAGGCAGCATCTACATCCTTCTTCAGCATCACAAACTCATTCTCAGCAGTGGTACGCTTGTTGATTTCATCCTCATACTTGTTCTTGAAGTCTTCCACCAG
CircID chr12:52517606|52518968
ORF Type ORF1
Protein Length 108
Nucleotide Length 324
Protein Sequence LVEDFKNKYEDEINKRTTAENEFVMLKKDVDAAYMNKVELEAKVDALMDEINFMKMFFDALSQMQTHVSDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIANRSRTEAE
Nucleotide Sequence CTGGTGGAAGACTTCAAGAACAAGTATGAGGATGAAATCAACAAGCGTACCACTGCTGAGAATGAGTTTGTGATGCTGAAGAAGGATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGATGCACTGATGGATGAGATTAACTTCATGAAGATGTTCTTTGATGCGCTGTCCCAGATGCAGACGCATGTCTCTGACACCTCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAG
CircID chr12:52517606|52518968
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MMRCPRCRRMSLTPQWSSPWTTTATWTWIASSLRSRPSMRRLPTAAGQKPS
Nucleotide Sequence TTGATGCGCTGTCCCAGATGCAGACGCATGTCTCTGACACCTCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAGT
CircID chr12:52517606|52518968
ORF Type ORF3
Protein Length 69
Nucleotide Length 210
Protein Sequence MRLAISSYWALTSAMMLSRSRLRLLSMERTTEVSETCVCIWDSASKNIFMKLISSISASTLASSSTLFM
Nucleotide Sequence CTGCGGTTGGCAATCTCCTCATACTGGGCCTTGACCTCAGCGATGATGCTATCCAGGTCCAGGTTGCGGTTGTTGTCCATGGAGAGGACCACTGAGGTGTCAGAGACATGCGTCTGCATCTGGGACAGCGCATCAAAGAACATCTTCATGAAGTTAATCTCATCCATCAGTGCATCAACCTTGGCCTCCAGCTCCACCTTGTTCATGTAG
CircID chr12:52517606|52518968
ORF Type ORF4
Protein Length 67
Nucleotide Length 201
Protein Sequence MRLHLGQRIKEHLHEVNLIHQCINLGLQLHLVHVGSIYILLQHHKLILSSGTLVDFILILVLEVFHQ
Nucleotide Sequence ATGCGTCTGCATCTGGGACAGCGCATCAAAGAACATCTTCATGAAGTTAATCTCATCCATCAGTGCATCAACCTTGGCCTCCAGCTCCACCTTGTTCATGTAGGCAGCATCTACATCCTTCTTCAGCATCACAAACTCATTCTCAGCAGTGGTACGCTTGTTGATTTCATCCTCATACTTGTTCTTGAAGTCTTCCACCAG
CircID chr12:52517606|52518968
ORF Type ORF1
Protein Length 43
Nucleotide Length 132
Protein Sequence LVEDFKNKYEDEINKRTTAENEFVMLKKVRVGGREPAACSYAL
Nucleotide Sequence CTGGTGGAAGACTTCAAGAACAAGTATGAGGATGAAATCAACAAGCGTACCACTGCTGAGAATGAGTTTGTGATGCTGAAGAAGGTGCGTGTGGGTGGGAGAGAACCAGCAGCCTGCAGCTATGCTCTCTAA
CircID chr12:52517606|52518968
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MLSKRGAHLSRVTVCAVPIIPVSPGCRCCLHEQGGAGGQG
Nucleotide Sequence ATGCTCTCTAAGCGTGGAGCTCACTTGAGTAGGGTGACGGTGTGTGCAGTGCCAATCATCCCTGTTTCCCCAGGATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGA
CircID chr12:52517606|52518968
ORF Type ORF4
Protein Length 85
Nucleotide Length 255
Protein Sequence MFPQDVDAAYMNKVELEAKVDALMDEINFMKMFFDAELSQMQTHVSDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIANRSRTEAE
Nucleotide Sequence CTGTTTCCCCAGGATGTAGATGCTGCCTACATGAACAAGGTGGAGCTGGAGGCCAAGGTTGATGCACTGATGGATGAGATTAACTTCATGAAGATGTTCTTTGATGCGGAGCTGTCCCAGATGCAGACGCATGTCTCTGACACCTCAGTGGTCCTCTCCATGGACAACAACCGCAACCTGGACCTGGATAGCATCATCGCTGAGGTCAAGGCCCAGTATGAGGAGATTGCCAACCGCAGCCGGACAGAAGCCGAG
CircID chr12:52517606|52518968
ORF Type ORF5
Protein Length 70
Nucleotide Length 213
Protein Sequence MRLAISSYWALTSAMMLSRSRLRLLSMERTTEVSETCVCIWDSSASKNIFMKLISSISASTLASSSTLFM
Nucleotide Sequence CTGCGGTTGGCAATCTCCTCATACTGGGCCTTGACCTCAGCGATGATGCTATCCAGGTCCAGGTTGCGGTTGTTGTCCATGGAGAGGACCACTGAGGTGTCAGAGACATGCGTCTGCATCTGGGACAGCTCCGCATCAAAGAACATCTTCATGAAGTTAATCTCATCCATCAGTGCATCAACCTTGGCCTCCAGCTCCACCTTGTTCATGTAG
CircID chr12:52517606|52518968
ORF Type ORF6
Protein Length 45
Nucleotide Length 138
Protein Sequence MRLHLGQLRIKEHLHEVNLIHQCINLGLQLHLVHVGSIYILGKQG
Nucleotide Sequence ATGCGTCTGCATCTGGGACAGCTCCGCATCAAAGAACATCTTCATGAAGTTAATCTCATCCATCAGTGCATCAACCTTGGCCTCCAGCTCCACCTTGTTCATGTAGGCAGCATCTACATCCTGGGGAAACAGGGATGA
CircID chr12:52517606|52518968
ORF Type ORF7
Protein Length 39
Nucleotide Length 117
Protein Sequence MQAAGSLPPTRTFFSITNSFSAVVRLLISSSYLFLKSST
Nucleotide Sequence CTGCAGGCTGCTGGTTCTCTCCCACCCACACGCACCTTCTTCAGCATCACAAACTCATTCTCAGCAGTGGTACGCTTGTTGATTTCATCCTCATACTTGTTCTTGAAGTCTTCCACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab