CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52518969|52519799
Strand +
CircType exon
Host Gene ENSG00000186081.10;
Algorism CIRI2;
Sequence CGAGGAGCGCGAGCAGATCAAGACCCTCAACAATAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAGCAGGGCACCAAGACTGTGAGGCAGAACCTGGAGCCGTTGTTCGAGCAGTACATCAACAACCTCAGGAGGCAGCTGGACAGCATCGTGGGGGAACGGGGCCGCCTGGACTCAGAGCTGAGAAACATGCAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52518969|52519799 hsa-miR-22-5p 0 0 1
chr12:52518969|52519799 hsa-miR-22-3p 0 0 1
chr12:52518969|52519799 hsa-miR-27a-5p 0 0 1
chr12:52518969|52519799 hsa-miR-27a-3p 0 0 1
chr12:52518969|52519799 hsa-miR-107 0 0 1
chr12:52518969|52519799 hsa-miR-198 0 0 1
chr12:52518969|52519799 hsa-miR-214-5p 0 0 1
chr12:52518969|52519799 hsa-miR-214-3p 0 0 1
chr12:52518969|52519799 hsa-miR-27b-5p 0 0 1
chr12:52518969|52519799 hsa-miR-27b-3p 0 0 1
chr12:52518969|52519799 hsa-miR-626 0 0 1
chr12:52518969|52519799 hsa-miR-650 1 0 1
chr12:52518969|52519799 hsa-miR-653-5p 0 0 1
chr12:52518969|52519799 hsa-miR-653-3p 0 0 1
chr12:52518969|52519799 hsa-miR-874-5p 0 0 1
chr12:52518969|52519799 hsa-miR-874-3p 0 0 1
chr12:52518969|52519799 hsa-miR-665 0 0 1
chr12:52518969|52519799 hsa-miR-873-5p 0 0 1
chr12:52518969|52519799 hsa-miR-873-3p 0 0 1
chr12:52518969|52519799 hsa-miR-1182 0 0 1
chr12:52518969|52519799 hsa-miR-1200 0 0 1
chr12:52518969|52519799 hsa-miR-1252-5p 0 0 1
chr12:52518969|52519799 hsa-miR-1252-3p 0 0 1
chr12:52518969|52519799 hsa-miR-193a-5p 0 0 1
chr12:52518969|52519799 hsa-miR-146b-3p 0 0 1
chr12:52518969|52519799 hsa-miR-1184 0 0 1
chr12:52518969|52519799 hsa-miR-361-3p 0 0 1
chr12:52518969|52519799 hsa-miR-767-3p 0 0 1
chr12:52518969|52519799 hsa-miR-337-5p 0 0 1
chr12:52518969|52519799 hsa-miR-128 0 0 1
chr12:52518969|52519799 hsa-miR-103 0 0 1
chr12:52518969|52519799 hsa-miR-1471 1 0 0
chr12:52518969|52519799 hsa-miR-3937 1 0 0
chr12:52518969|52519799 hsa-miR-4534 1 0 0
chr12:52518969|52519799 hsa-miR-6882-3p 1 0 0
chr12:52518969|52519799 hsa-miR-10396a-3p 1 0 0
chr12:52518969|52519799 hsa-miR-10396b-3p 1 0 0
chr12:52518969|52519799 hsa-miR-6775-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:52518969|52519799
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence MEQQNKVLDTKWTLLQEQGTKTVRQNLEPLFEQYINNLRRQLDSIVGERGRLDSELRNMQD
Nucleotide Sequence CTGGAGCAGCAGAACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAGCAGGGCACCAAGACTGTGAGGCAGAACCTGGAGCCGTTGTTCGAGCAGTACATCAACAACCTCAGGAGGCAGCTGGACAGCATCGTGGGGGAACGGGGCCGCCTGGACTCAGAGCTGAGAAACATGCAGGAC
CircID chr12:52518969|52519799
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MPPSSTRCGSWSSRTRFWTPSGPCCRSRAPRL
Nucleotide Sequence TTGCCTCCTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAGCAGGGCACCAAGACTGTGA
CircID chr12:52518969|52519799
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MPPEVVDVLLEQRLQVLPHSLGALLLQQGPLGVQNLVLLLQEPHLVDEGGKLIVEGLDLLALL
Nucleotide Sequence CTGCCTCCTGAGGTTGTTGATGTACTGCTCGAACAACGGCTCCAGGTTCTGCCTCACAGTCTTGGTGCCCTGCTCCTGCAGCAGGGTCCACTTGGTGTCCAGAACCTTGTTCTGCTGCTCCAGGAACCGCACCTTGTCGATGAAGGAGGCAAACTTATTGTTGAGGGTCTTGATCTGCTCGCGCTCCTC
CircID chr12:52518969|52519799
ORF Type ORF4
Protein Length 81
Nucleotide Length 243
Protein Sequence MFLSSESRRPRSPTMLSSCLLRLLMYCSNNGSRFCLTVLVPCSCSRVHLVSRTLFCCSRNRTLSMKEANLLLRVLICSRSS
Nucleotide Sequence ATGTTTCTCAGCTCTGAGTCCAGGCGGCCCCGTTCCCCCACGATGCTGTCCAGCTGCCTCCTGAGGTTGTTGATGTACTGCTCGAACAACGGCTCCAGGTTCTGCCTCACAGTCTTGGTGCCCTGCTCCTGCAGCAGGGTCCACTTGGTGTCCAGAACCTTGTTCTGCTGCTCCAGGAACCGCACCTTGTCGATGAAGGAGGCAAACTTATTGTTGAGGGTCTTGATCTGCTCGCGCTCCTCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab