CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52566535|52566646
Strand -
CircType exon
Host Gene ENSG00000170484.8;
Algorism CIRI2;
Sequence CTGCTTACAGGTCTCGTGTCACCCCACCATGCTGGCAGGGGATGTAAAACCTCTCAGACAGTAGCTAACTTGGCCTAAGCACAGAACAAACCAGCCCCTCCCCTGTCGTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52566535|52566646 hsa-miR-375-5p 0 0 1
chr12:52566535|52566646 hsa-miR-375-3p 0 0 1
chr12:52566535|52566646 hsa-miR-608 1 0 1
chr12:52566535|52566646 hsa-miR-636 0 0 1
chr12:52566535|52566646 hsa-miR-541-5p 0 0 1
chr12:52566535|52566646 hsa-miR-541-3p 0 0 1
chr12:52566535|52566646 hsa-miR-1202 1 0 1
chr12:52566535|52566646 hsa-miR-769-5p 0 0 1
chr12:52566535|52566646 hsa-miR-423-5p 0 0 1
chr12:52566535|52566646 hsa-miR-654-5p 0 0 1
chr12:52566535|52566646 hsa-miR-331-3p 0 0 1
chr12:52566535|52566646 hsa-miR-338-3p 0 0 1
chr12:52566535|52566646 hsa-miR-342-5p 0 0 1
chr12:52566535|52566646 hsa-miR-218 0 0 1
chr12:52566535|52566646 hsa-miR-1295 0 0 1
chr12:52566535|52566646 hsa-miR-762 1 0 0
chr12:52566535|52566646 hsa-miR-2113 1 0 0
chr12:52566535|52566646 hsa-miR-761 1 0 0
chr12:52566535|52566646 hsa-miR-3196 1 0 0
chr12:52566535|52566646 hsa-miR-4498 1 0 0
chr12:52566535|52566646 hsa-miR-4507 1 0 0
chr12:52566535|52566646 hsa-miR-1587 1 0 0
chr12:52566535|52566646 hsa-miR-4651 1 0 0
chr12:52566535|52566646 hsa-miR-4656 1 0 0
chr12:52566535|52566646 hsa-miR-5572 1 0 0
chr12:52566535|52566646 hsa-miR-5704 1 0 0
chr12:52566535|52566646 hsa-miR-5787 1 0 0
chr12:52566535|52566646 hsa-miR-6085 1 0 0
chr12:52566535|52566646 hsa-miR-6133 1 0 0
chr12:52566535|52566646 hsa-miR-138-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6742-5p 1 0 0
chr12:52566535|52566646 hsa-miR-185-3p 1 0 0
chr12:52566535|52566646 hsa-miR-6732-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6798-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6821-5p 1 0 0
chr12:52566535|52566646 hsa-miR-296-3p 1 0 0
chr12:52566535|52566646 hsa-miR-4446-3p 1 0 0
chr12:52566535|52566646 hsa-miR-149-3p 1 0 0
chr12:52566535|52566646 hsa-miR-6824-5p 1 0 0
chr12:52566535|52566646 hsa-miR-744-5p 1 0 0
chr12:52566535|52566646 hsa-miR-1207-5p 1 0 0
chr12:52566535|52566646 hsa-miR-4763-3p 1 0 0
chr12:52566535|52566646 hsa-miR-6769b-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6812-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6816-5p 1 0 0
chr12:52566535|52566646 hsa-miR-5001-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6756-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6813-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6819-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6842-5p 1 0 0
chr12:52566535|52566646 hsa-miR-1249-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6722-3p 1 0 0
chr12:52566535|52566646 hsa-miR-6774-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6779-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6797-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6808-5p 1 0 0
chr12:52566535|52566646 hsa-miR-7111-5p 1 0 0
chr12:52566535|52566646 hsa-miR-3620-5p 1 0 0
chr12:52566535|52566646 hsa-miR-4728-5p 1 0 0
chr12:52566535|52566646 hsa-miR-10396b-5p 1 0 0
chr12:52566535|52566646 hsa-miR-1237-5p 1 0 0
chr12:52566535|52566646 hsa-miR-1909-3p 1 0 0
chr12:52566535|52566646 hsa-miR-328-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6846-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6848-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6883-5p 1 0 0
chr12:52566535|52566646 hsa-miR-939-5p 1 0 0
chr12:52566535|52566646 hsa-miR-6511b-5p 1 0 0
chr12:52566535|52566646 hsa-miR-3940-5p 1 0 0
chr12:52566535|52566646 hsa-miR-3184-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:52566535|52566646
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence LLTGLVSPHHAGRGCKTSQTVANLA
Nucleotide Sequence CTGCTTACAGGTCTCGTGTCACCCCACCATGCTGGCAGGGGATGTAAAACCTCTCAGACAGTAGCTAACTTGGCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab