CircRNA Information

General Information
circRNA Basic Information
CircID chr12:52950040|52950193
Strand +
CircType exon
Host Gene ENSG00000111057.9;
Algorism CIRI2;
Sequence CTATCCCTTTTCATCTAGCCCCACCCCATTCCCTCCTTTCCTGGATTCCCAGATCCCAGCACTCTGCCCCTCTTGGGAAGCCTCAGCAGGCTGGCTAGCTGGCTGGCCTGCCTGCCCAGAAGTGAGTCGCTACTAACAAGTCCTCTTCCTGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:52950040|52950193 hsa-miR-370-5p 0 0 1
chr12:52950040|52950193 hsa-miR-370-3p 0 0 1
chr12:52950040|52950193 hsa-miR-575 0 0 1
chr12:52950040|52950193 hsa-miR-596 0 1 1
chr12:52950040|52950193 hsa-miR-608 1 1 1
chr12:52950040|52950193 hsa-miR-612 0 1 1
chr12:52950040|52950193 hsa-miR-638 1 0 1
chr12:52950040|52950193 hsa-miR-665 1 0 1
chr12:52950040|52950193 hsa-miR-940 0 1 1
chr12:52950040|52950193 hsa-miR-512-3p 0 0 1
chr12:52950040|52950193 hsa-miR-486-3p 0 0 1
chr12:52950040|52950193 hsa-miR-485-5p 0 0 1
chr12:52950040|52950193 hsa-miR-423-5p 1 1 1
chr12:52950040|52950193 hsa-miR-342-5p 0 0 1
chr12:52950040|52950193 hsa-miR-769-3p 1 1 1
chr12:52950040|52950193 hsa-miR-450b-3p 0 1 1
chr12:52950040|52950193 hsa-miR-1285 0 0 1
chr12:52950040|52950193 hsa-miR-622 0 1 0
chr12:52950040|52950193 hsa-miR-663a 1 0 0
chr12:52950040|52950193 hsa-miR-658 1 0 0
chr12:52950040|52950193 hsa-miR-762 1 0 0
chr12:52950040|52950193 hsa-miR-1268a 1 0 0
chr12:52950040|52950193 hsa-miR-3131 1 0 0
chr12:52950040|52950193 hsa-miR-3154 1 0 0
chr12:52950040|52950193 hsa-miR-3188 1 0 0
chr12:52950040|52950193 hsa-miR-4270 1 0 0
chr12:52950040|52950193 hsa-miR-3936 1 0 0
chr12:52950040|52950193 hsa-miR-1268b 1 0 0
chr12:52950040|52950193 hsa-miR-4476 1 0 0
chr12:52950040|52950193 hsa-miR-4489 1 1 0
chr12:52950040|52950193 hsa-miR-4533 1 0 0
chr12:52950040|52950193 hsa-miR-1587 1 0 0
chr12:52950040|52950193 hsa-miR-4651 1 1 0
chr12:52950040|52950193 hsa-miR-4654 1 0 0
chr12:52950040|52950193 hsa-miR-4688 1 0 0
chr12:52950040|52950193 hsa-miR-4739 1 1 0
chr12:52950040|52950193 hsa-miR-4779 0 1 0
chr12:52950040|52950193 hsa-miR-5090 1 0 0
chr12:52950040|52950193 hsa-miR-5093 1 0 0
chr12:52950040|52950193 hsa-miR-5191 1 0 0
chr12:52950040|52950193 hsa-miR-5194 1 0 0
chr12:52950040|52950193 hsa-miR-5787 1 0 0
chr12:52950040|52950193 hsa-miR-6090 1 0 0
chr12:52950040|52950193 hsa-miR-6127 1 1 0
chr12:52950040|52950193 hsa-miR-6129 1 1 0
chr12:52950040|52950193 hsa-miR-6133 1 0 0
chr12:52950040|52950193 hsa-miR-6860 0 1 0
chr12:52950040|52950193 hsa-miR-8083 0 1 0
chr12:52950040|52950193 hsa-miR-8089 1 0 0
chr12:52950040|52950193 hsa-miR-9500 1 0 0
chr12:52950040|52950193 hsa-miR-12118 1 1 0
chr12:52950040|52950193 hsa-miR-4433b-3p 1 0 0
chr12:52950040|52950193 hsa-miR-6734-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4433a-3p 1 0 0
chr12:52950040|52950193 hsa-miR-6765-5p 1 0 0
chr12:52950040|52950193 hsa-miR-125b-1-3p 1 0 0
chr12:52950040|52950193 hsa-miR-6861-5p 0 1 0
chr12:52950040|52950193 hsa-miR-7106-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6894-5p 1 0 0
chr12:52950040|52950193 hsa-miR-1972 0 1 0
chr12:52950040|52950193 hsa-miR-5187-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6757-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6873-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6880-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4695-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4709-3p 1 0 0
chr12:52950040|52950193 hsa-miR-4722-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6730-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6890-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6820-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6741-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6727-5p 0 1 0
chr12:52950040|52950193 hsa-miR-197-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6742-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6716-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6871-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3151-5p 1 1 0
chr12:52950040|52950193 hsa-miR-3180-3p 1 0 0
chr12:52950040|52950193 hsa-miR-185-3p 1 0 0
chr12:52950040|52950193 hsa-miR-6732-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6881-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6782-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3194-5p 0 1 0
chr12:52950040|52950193 hsa-miR-6858-3p 0 1 0
chr12:52950040|52950193 hsa-miR-6786-5p 1 0 0
chr12:52950040|52950193 hsa-miR-204-3p 0 1 0
chr12:52950040|52950193 hsa-miR-4640-5p 0 1 0
chr12:52950040|52950193 hsa-miR-4446-3p 1 0 0
chr12:52950040|52950193 hsa-miR-149-3p 1 0 0
chr12:52950040|52950193 hsa-miR-3162-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3191-3p 1 0 0
chr12:52950040|52950193 hsa-miR-4652-5p 0 1 0
chr12:52950040|52950193 hsa-miR-744-5p 1 0 0
chr12:52950040|52950193 hsa-miR-1207-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4763-3p 1 1 0
chr12:52950040|52950193 hsa-miR-6769b-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6812-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6816-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3180 1 0 0
chr12:52950040|52950193 hsa-miR-6726-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6737-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6743-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6754-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6756-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6813-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6819-5p 0 1 0
chr12:52950040|52950193 hsa-miR-6851-5p 1 0 0
chr12:52950040|52950193 hsa-miR-10401-5p 1 0 0
chr12:52950040|52950193 hsa-miR-11181-3p 1 0 0
chr12:52950040|52950193 hsa-miR-1249-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6722-3p 1 0 0
chr12:52950040|52950193 hsa-miR-6779-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6780a-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6797-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6808-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6879-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3620-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4728-5p 1 0 0
chr12:52950040|52950193 hsa-miR-5189-5p 0 1 0
chr12:52950040|52950193 hsa-miR-5196-5p 1 0 0
chr12:52950040|52950193 hsa-miR-10396a-5p 1 0 0
chr12:52950040|52950193 hsa-miR-10396b-5p 1 0 0
chr12:52950040|52950193 hsa-miR-10526-3p 1 0 0
chr12:52950040|52950193 hsa-miR-1909-3p 1 0 0
chr12:52950040|52950193 hsa-miR-328-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4649-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4745-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6729-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6735-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6738-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6795-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6848-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6858-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6883-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6887-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6889-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3187-5p 0 1 0
chr12:52950040|52950193 hsa-miR-6831-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6845-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4758-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3198 1 0 0
chr12:52950040|52950193 hsa-miR-30c-1-3p 1 0 0
chr12:52950040|52950193 hsa-miR-6856-5p 1 0 0
chr12:52950040|52950193 hsa-miR-1914-3p 1 0 0
chr12:52950040|52950193 hsa-miR-6855-5p 1 0 0
chr12:52950040|52950193 hsa-miR-3116 1 0 0
chr12:52950040|52950193 hsa-miR-10398-3p 1 0 0
chr12:52950040|52950193 hsa-miR-3173-3p 1 1 0
chr12:52950040|52950193 hsa-miR-4646-5p 1 1 0
chr12:52950040|52950193 hsa-miR-4747-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6876-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6891-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6766-5p 1 1 0
chr12:52950040|52950193 hsa-miR-6785-5p 1 0 0
chr12:52950040|52950193 hsa-miR-4667-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6822-5p 1 0 0
chr12:52950040|52950193 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:52950040|52950193
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MPLLGSLSRLASWLACLPRSESLLTSPLPG
Nucleotide Sequence CTGCCCCTCTTGGGAAGCCTCAGCAGGCTGGCTAGCTGGCTGGCCTGCCTGCCCAGAAGTGAGTCGCTACTAACAAGTCCTCTTCCTGGC
CircID chr12:52950040|52950193
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MDSQIPALCPSWEASAGWLAGWPACPEVSRY
Nucleotide Sequence CTGGATTCCCAGATCCCAGCACTCTGCCCCTCTTGGGAAGCCTCAGCAGGCTGGCTAGCTGGCTGGCCTGCCTGCCCAGAAGTGAGTCGCTACTAA
CircID chr12:52950040|52950193
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MGRQASQLASLLRLPKRGRVLGSGNPGKEGMGWG
Nucleotide Sequence CTGGGCAGGCAGGCCAGCCAGCTAGCCAGCCTGCTGAGGCTTCCCAAGAGGGGCAGAGTGCTGGGATCTGGGAATCCAGGAAAGGAGGGAATGGGGTGGGGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab