CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53044371|53044533
Strand -
CircType exon
Host Gene ENSG00000257337.5;
Algorism CIRI2;
Sequence CTCCAGCTTGGACAATACACCCTCTGTCCTCAGCCAGGAGATCCGCCTCTGGAGTTGGCTCTGCCCCTTCCCCCACTCTTCCTGGTTCCCAGCACCCAAACCCTCTACTGGAGTTCTCCTGACCCAGTGGTCTCCAGCCAGGACAGTCCCACACCTTCAAATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53044371|53044533 hsa-miR-146a-5p 0 0 1
chr12:53044371|53044533 hsa-miR-146a-3p 0 0 1
chr12:53044371|53044533 hsa-miR-493-5p 0 0 1
chr12:53044371|53044533 hsa-miR-493-3p 0 0 1
chr12:53044371|53044533 hsa-miR-625-5p 0 0 1
chr12:53044371|53044533 hsa-miR-625-3p 0 0 1
chr12:53044371|53044533 hsa-miR-936 1 0 1
chr12:53044371|53044533 hsa-miR-1262 0 0 1
chr12:53044371|53044533 hsa-miR-1275 0 0 1
chr12:53044371|53044533 hsa-miR-1292-5p 0 0 1
chr12:53044371|53044533 hsa-miR-1292-3p 0 0 1
chr12:53044371|53044533 hsa-miR-770-5p 0 0 1
chr12:53044371|53044533 hsa-miR-1224-5p 0 0 1
chr12:53044371|53044533 hsa-miR-486-3p 0 0 1
chr12:53044371|53044533 hsa-miR-525-5p 0 0 1
chr12:53044371|53044533 hsa-miR-508-5p 0 0 1
chr12:53044371|53044533 hsa-miR-520a-5p 0 0 1
chr12:53044371|53044533 hsa-miR-146b-5p 0 0 1
chr12:53044371|53044533 hsa-miR-762 1 0 0
chr12:53044371|53044533 hsa-miR-920 1 0 0
chr12:53044371|53044533 hsa-miR-940 1 0 0
chr12:53044371|53044533 hsa-miR-711 1 0 0
chr12:53044371|53044533 hsa-miR-3132 1 0 0
chr12:53044371|53044533 hsa-miR-3141 1 0 0
chr12:53044371|53044533 hsa-miR-3147 1 0 0
chr12:53044371|53044533 hsa-miR-3188 1 0 0
chr12:53044371|53044533 hsa-miR-3196 1 0 0
chr12:53044371|53044533 hsa-miR-4270 1 0 0
chr12:53044371|53044533 hsa-miR-3907 1 0 0
chr12:53044371|53044533 hsa-miR-3911 1 0 0
chr12:53044371|53044533 hsa-miR-4425 1 0 0
chr12:53044371|53044533 hsa-miR-4463 1 0 0
chr12:53044371|53044533 hsa-miR-4466 1 0 0
chr12:53044371|53044533 hsa-miR-4471 1 0 0
chr12:53044371|53044533 hsa-miR-4488 1 0 0
chr12:53044371|53044533 hsa-miR-2392 1 0 0
chr12:53044371|53044533 hsa-miR-1587 1 0 0
chr12:53044371|53044533 hsa-miR-4654 1 0 0
chr12:53044371|53044533 hsa-miR-4656 1 0 0
chr12:53044371|53044533 hsa-miR-4688 1 0 0
chr12:53044371|53044533 hsa-miR-4730 1 0 0
chr12:53044371|53044533 hsa-miR-4741 1 0 0
chr12:53044371|53044533 hsa-miR-5090 1 0 0
chr12:53044371|53044533 hsa-miR-5192 1 0 0
chr12:53044371|53044533 hsa-miR-5194 1 0 0
chr12:53044371|53044533 hsa-miR-5572 1 0 0
chr12:53044371|53044533 hsa-miR-5787 1 0 0
chr12:53044371|53044533 hsa-miR-6081 1 0 0
chr12:53044371|53044533 hsa-miR-6090 1 0 0
chr12:53044371|53044533 hsa-miR-8085 1 0 0
chr12:53044371|53044533 hsa-miR-8089 1 0 0
chr12:53044371|53044533 hsa-miR-12115 1 0 0
chr12:53044371|53044533 hsa-miR-12118 1 0 0
chr12:53044371|53044533 hsa-miR-4433b-3p 1 0 0
chr12:53044371|53044533 hsa-miR-4731-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6747-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4433a-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6765-5p 1 0 0
chr12:53044371|53044533 hsa-miR-125b-1-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6861-5p 1 0 0
chr12:53044371|53044533 hsa-miR-7106-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6825-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4687-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6799-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4768-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6880-5p 1 0 0
chr12:53044371|53044533 hsa-miR-7847-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6730-5p 1 0 0
chr12:53044371|53044533 hsa-miR-505-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6890-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6741-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6759-5p 1 0 0
chr12:53044371|53044533 hsa-miR-197-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6776-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6742-5p 1 0 0
chr12:53044371|53044533 hsa-miR-491-5p 1 0 0
chr12:53044371|53044533 hsa-miR-3180-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6772-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6796-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6732-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6827-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6760-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6810-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6786-5p 1 0 0
chr12:53044371|53044533 hsa-miR-7109-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6740-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4640-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6753-5p 1 0 0
chr12:53044371|53044533 hsa-miR-296-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6771-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4732-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4713-3p 1 0 0
chr12:53044371|53044533 hsa-miR-3162-5p 1 0 0
chr12:53044371|53044533 hsa-miR-5010-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4776-5p 1 0 0
chr12:53044371|53044533 hsa-miR-423-5p 1 0 0
chr12:53044371|53044533 hsa-miR-3144-5p 1 0 0
chr12:53044371|53044533 hsa-miR-1207-5p 1 0 0
chr12:53044371|53044533 hsa-miR-1233-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4763-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6787-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6812-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6816-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6870-5p 1 0 0
chr12:53044371|53044533 hsa-miR-1343-5p 1 0 0
chr12:53044371|53044533 hsa-miR-3180 1 0 0
chr12:53044371|53044533 hsa-miR-6726-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6743-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6752-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6754-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6756-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6803-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6851-5p 1 0 0
chr12:53044371|53044533 hsa-miR-7110-5p 1 0 0
chr12:53044371|53044533 hsa-miR-10401-5p 1 0 0
chr12:53044371|53044533 hsa-miR-1249-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6751-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6779-5p 1 0 0
chr12:53044371|53044533 hsa-miR-7111-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4728-5p 1 0 0
chr12:53044371|53044533 hsa-miR-5196-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6780b-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6836-5p 1 0 0
chr12:53044371|53044533 hsa-miR-1237-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4632-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4649-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4701-3p 1 0 0
chr12:53044371|53044533 hsa-miR-4725-3p 1 0 0
chr12:53044371|53044533 hsa-miR-4726-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4745-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6729-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6735-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6795-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6846-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6848-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6887-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6831-5p 1 0 0
chr12:53044371|53044533 hsa-miR-1238-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4758-5p 1 0 0
chr12:53044371|53044533 hsa-miR-7843-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4665-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6736-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6855-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4700-5p 1 0 0
chr12:53044371|53044533 hsa-miR-3173-3p 1 0 0
chr12:53044371|53044533 hsa-miR-4646-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4747-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4716-3p 1 0 0
chr12:53044371|53044533 hsa-miR-6766-5p 1 0 0
chr12:53044371|53044533 hsa-miR-4667-5p 1 0 0
chr12:53044371|53044533 hsa-miR-6822-5p 1 0 0
chr12:53044371|53044533 hsa-miR-619-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:53044371|53044533
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MELALPLPPLFLVPSTQTLYWSSPDPVVSSQDSPTPSN
Nucleotide Sequence CTGGAGTTGGCTCTGCCCCTTCCCCCACTCTTCCTGGTTCCCAGCACCCAAACCCTCTACTGGAGTTCTCCTGACCCAGTGGTCTCCAGCCAGGACAGTCCCACACCTTCAAAT
CircID chr12:53044371|53044533
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MDNTPSVLSQEIRLWSWLCPFPHSSWFPAPKPSTGVLLTQWSPARTVPHLQI
Nucleotide Sequence TTGGACAATACACCCTCTGTCCTCAGCCAGGAGATCCGCCTCTGGAGTTGGCTCTGCCCCTTCCCCCACTCTTCCTGGTTCCCAGCACCCAAACCCTCTACTGGAGTTCTCCTGACCCAGTGGTCTCCAGCCAGGACAGTCCCACACCTTCAAATC
CircID chr12:53044371|53044533
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MSSARRSASGVGSAPSPTLPGSQHPNPLLEFS
Nucleotide Sequence CTGTCCTCAGCCAGGAGATCCGCCTCTGGAGTTGGCTCTGCCCCTTCCCCCACTCTTCCTGGTTCCCAGCACCCAAACCCTCTACTGGAGTTCTCCTGA
CircID chr12:53044371|53044533
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MKVWDCPGWRPLGQENSSRGFGCWEPGRVGEGAEPTPEADLLAEDRGCIVQAG
Nucleotide Sequence TTGAAGGTGTGGGACTGTCCTGGCTGGAGACCACTGGGTCAGGAGAACTCCAGTAGAGGGTTTGGGTGCTGGGAACCAGGAAGAGTGGGGGAAGGGGCAGAGCCAACTCCAGAGGCGGATCTCCTGGCTGAGGACAGAGGGTGTATTGTCCAAGCTGGA
CircID chr12:53044371|53044533
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MAGDHWVRRTPVEGLGAGNQEEWGKGQSQLQRRISWLRTEGVLSKLE
Nucleotide Sequence CTGGCTGGAGACCACTGGGTCAGGAGAACTCCAGTAGAGGGTTTGGGTGCTGGGAACCAGGAAGAGTGGGGGAAGGGGCAGAGCCAACTCCAGAGGCGGATCTCCTGGCTGAGGACAGAGGGTGTATTGTCCAAGCTGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab