CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53058384|53058761
Strand -
CircType exon
Host Gene ENSG00000111077.16;
Algorism CIRI2;
Sequence CTGCACCATCCACGGACCACAGCTCACTTTCCCCAAGGACCAGCTTGACGAGGCCTGGACTGGTGAGTCTGAGACAAGTGGCCTGGGGCTGGAGTCCAGGTGGCAGGCAGGTGGCAGGCAGGTGGCAGGCAGGCAGGAGAGTGTGGTATGGGCCAGGGGCCTGGTTCTTCACTGTCCACTCCCCATAGATGAGAGGTTCCCCTTCCAAGCCTCCGTGGAGTTTGTCTTCTCCTCCAGCCCCGAGAAGATCAAAGGTAAGAGCAGGGACATGGGCTGGGGACTGAGGGCCGCCTCTCCCCTGCTCCCCAATACCCGAGTGGCCTTCCACAGGCAGCACTCCACGGAACGACCCCTCGGTCTCTGTCGACTACAACACCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53058384|53058761 hsa-miR-122-5p 0 0 1
chr12:53058384|53058761 hsa-miR-122-3p 0 0 1
chr12:53058384|53058761 hsa-miR-422a 0 0 1
chr12:53058384|53058761 hsa-miR-558 0 0 1
chr12:53058384|53058761 hsa-miR-619-5p 0 0 1
chr12:53058384|53058761 hsa-miR-619-3p 0 0 1
chr12:53058384|53058761 hsa-miR-766-5p 0 0 1
chr12:53058384|53058761 hsa-miR-766-3p 0 0 1
chr12:53058384|53058761 hsa-miR-765 0 0 1
chr12:53058384|53058761 hsa-miR-939-5p 0 0 1
chr12:53058384|53058761 hsa-miR-939-3p 0 0 1
chr12:53058384|53058761 hsa-miR-942-5p 0 0 1
chr12:53058384|53058761 hsa-miR-942-3p 0 0 1
chr12:53058384|53058761 hsa-miR-1226-5p 0 0 1
chr12:53058384|53058761 hsa-miR-1226-3p 0 0 1
chr12:53058384|53058761 hsa-miR-1253 0 0 1
chr12:53058384|53058761 hsa-miR-512-3p 0 0 1
chr12:53058384|53058761 hsa-miR-508-5p 0 0 1
chr12:53058384|53058761 hsa-miR-331-3p 0 0 1
chr12:53058384|53058761 hsa-miR-140-3p 0 0 1
chr12:53058384|53058761 hsa-miR-455-3p 0 0 1
chr12:53058384|53058761 hsa-miR-548b-3p 0 0 1
chr12:53058384|53058761 hsa-miR-378 0 0 1
chr12:53058384|53058761 hsa-miR-1826 0 0 1
chr12:53058384|53058761 hsa-miR-346 1 0 0
chr12:53058384|53058761 hsa-miR-572 1 0 0
chr12:53058384|53058761 hsa-miR-596 1 0 0
chr12:53058384|53058761 hsa-miR-608 1 0 0
chr12:53058384|53058761 hsa-miR-636 1 0 0
chr12:53058384|53058761 hsa-miR-663b 1 0 0
chr12:53058384|53058761 hsa-miR-1538 1 0 0
chr12:53058384|53058761 hsa-miR-1913 1 0 0
chr12:53058384|53058761 hsa-miR-3659 1 0 0
chr12:53058384|53058761 hsa-miR-3943 1 0 0
chr12:53058384|53058761 hsa-miR-3972 1 0 0
chr12:53058384|53058761 hsa-miR-4641 1 0 0
chr12:53058384|53058761 hsa-miR-4656 1 0 0
chr12:53058384|53058761 hsa-miR-5572 1 0 0
chr12:53058384|53058761 hsa-miR-6085 1 0 0
chr12:53058384|53058761 hsa-miR-6090 1 0 0
chr12:53058384|53058761 hsa-miR-6125 1 0 0
chr12:53058384|53058761 hsa-miR-214-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6747-3p 1 0 0
chr12:53058384|53058761 hsa-miR-1273h-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6822-3p 1 0 0
chr12:53058384|53058761 hsa-miR-210-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6510-5p 1 0 0
chr12:53058384|53058761 hsa-miR-7114-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6089 1 0 0
chr12:53058384|53058761 hsa-miR-7160-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6820-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6762-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6727-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6849-3p 1 0 0
chr12:53058384|53058761 hsa-miR-1915-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6845-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6796-5p 1 0 0
chr12:53058384|53058761 hsa-miR-4655-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6805-5p 1 0 0
chr12:53058384|53058761 hsa-miR-7109-5p 1 0 0
chr12:53058384|53058761 hsa-miR-4763-5p 1 0 0
chr12:53058384|53058761 hsa-miR-1908-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6894-3p 1 0 0
chr12:53058384|53058761 hsa-miR-4715-3p 1 0 0
chr12:53058384|53058761 hsa-miR-7113-3p 1 0 0
chr12:53058384|53058761 hsa-miR-296-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6749-5p 1 0 0
chr12:53058384|53058761 hsa-miR-1266-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6769a-3p 1 0 0
chr12:53058384|53058761 hsa-miR-593-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6743-3p 1 0 0
chr12:53058384|53058761 hsa-miR-3120-5p 1 0 0
chr12:53058384|53058761 hsa-miR-2355-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6741-3p 1 0 0
chr12:53058384|53058761 hsa-miR-4632-3p 1 0 0
chr12:53058384|53058761 hsa-miR-1296-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6738-3p 1 0 0
chr12:53058384|53058761 hsa-miR-328-3p 1 0 0
chr12:53058384|53058761 hsa-miR-10400-5p 1 0 0
chr12:53058384|53058761 hsa-miR-1233-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6778-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6816-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6775-5p 1 0 0
chr12:53058384|53058761 hsa-miR-1343-5p 1 0 0
chr12:53058384|53058761 hsa-miR-5001-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6743-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6754-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6803-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6819-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6722-3p 1 0 0
chr12:53058384|53058761 hsa-miR-3620-5p 1 0 0
chr12:53058384|53058761 hsa-miR-4728-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6780b-5p 1 0 0
chr12:53058384|53058761 hsa-miR-328-5p 1 0 0
chr12:53058384|53058761 hsa-miR-4649-5p 1 0 0
chr12:53058384|53058761 hsa-miR-4685-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6738-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6794-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6846-5p 1 0 0
chr12:53058384|53058761 hsa-miR-6848-5p 1 0 0
chr12:53058384|53058761 hsa-miR-10396a-3p 1 0 0
chr12:53058384|53058761 hsa-miR-10396b-3p 1 0 0
chr12:53058384|53058761 hsa-miR-1271-3p 1 0 0
chr12:53058384|53058761 hsa-miR-1914-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6849-5p 1 0 0
chr12:53058384|53058761 hsa-miR-4722-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6727-3p 1 0 0
chr12:53058384|53058761 hsa-miR-6775-3p 1 0 0
chr12:53058384|53058761 hsa-miR-10392-3p 1 0 0
chr12:53058384|53058761 hsa-miR-3927-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:53058384|53058761
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MGTEGRLSPAPQYPSGLPQAALHGTTPRSLSTTTP
Nucleotide Sequence CTGGGGACTGAGGGCCGCCTCTCCCCTGCTCCCCAATACCCGAGTGGCCTTCCACAGGCAGCACTCCACGGAACGACCCCTCGGTCTCTGTCGACTACAACACCA
CircID chr12:53058384|53058761
ORF Type ORF2
Protein Length 98
Nucleotide Length 294
Protein Sequence MGLESRWQAGGRQVAGRQESVVWARGLVLHCPLPIDERFPFQASVEFVFSSSPEKIKGKSRDMGWGLRAASPLLPNTRVAFHRQHSTERPLGLCRLQH
Nucleotide Sequence CTGGGGCTGGAGTCCAGGTGGCAGGCAGGTGGCAGGCAGGTGGCAGGCAGGCAGGAGAGTGTGGTATGGGCCAGGGGCCTGGTTCTTCACTGTCCACTCCCCATAGATGAGAGGTTCCCCTTCCAAGCCTCCGTGGAGTTTGTCTTCTCCTCCAGCCCCGAGAAGATCAAAGGTAAGAGCAGGGACATGGGCTGGGGACTGAGGGCCGCCTCTCCCCTGCTCCCCAATACCCGAGTGGCCTTCCACAGGCAGCACTCCACGGAACGACCCCTCGGTCTCTGTCGACTACAACAC
CircID chr12:53058384|53058761
ORF Type ORF3
Protein Length 47
Nucleotide Length 144
Protein Sequence MTRPGLVSLRQVAWGWSPGGRQVAGRWQAGRRVWYGPGAWFFTVHSP
Nucleotide Sequence TTGACGAGGCCTGGACTGGTGAGTCTGAGACAAGTGGCCTGGGGCTGGAGTCCAGGTGGCAGGCAGGTGGCAGGCAGGTGGCAGGCAGGCAGGAGAGTGTGGTATGGGCCAGGGGCCTGGTTCTTCACTGTCCACTCCCCATAG
CircID chr12:53058384|53058761
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MRGSPSKPPWSLSSPPAPRRSKVRAGTWAGD
Nucleotide Sequence ATGAGAGGTTCCCCTTCCAAGCCTCCGTGGAGTTTGTCTTCTCCTCCAGCCCCGAGAAGATCAAAGGTAAGAGCAGGGACATGGGCTGGGGACTGA
CircID chr12:53058384|53058761
ORF Type ORF5
Protein Length 53
Nucleotide Length 162
Protein Sequence MWKATRVLGSRGEAALSPQPMSLLLPLIFSGLEEKTNSTEAWKGNLSSMGSGQ
Nucleotide Sequence CTGTGGAAGGCCACTCGGGTATTGGGGAGCAGGGGAGAGGCGGCCCTCAGTCCCCAGCCCATGTCCCTGCTCTTACCTTTGATCTTCTCGGGGCTGGAGGAGAAGACAAACTCCACGGAGGCTTGGAAGGGGAACCTCTCATCTATGGGGAGTGGACAGTGA
CircID chr12:53058384|53058761
ORF Type ORF6
Protein Length 52
Nucleotide Length 156
Protein Sequence MAHTTLSCLPATCLPPACHLDSSPRPLVSDSPVQASSSWSLGKVSCGPWMVQ
Nucleotide Sequence CTGGCCCATACCACACTCTCCTGCCTGCCTGCCACCTGCCTGCCACCTGCCTGCCACCTGGACTCCAGCCCCAGGCCACTTGTCTCAGACTCACCAGTCCAGGCCTCGTCAAGCTGGTCCTTGGGGAAAGTGAGCTGTGGTCCGTGGATGGTGCAG
CircID chr12:53058384|53058761
ORF Type ORF7
Protein Length 34
Nucleotide Length 105
Protein Sequence MPPACHLPATWTPAPGHLSQTHQSRPRQAGPWGK
Nucleotide Sequence CTGCCACCTGCCTGCCACCTGCCTGCCACCTGGACTCCAGCCCCAGGCCACTTGTCTCAGACTCACCAGTCCAGGCCTCGTCAAGCTGGTCCTTGGGGAAAGTGA
CircID chr12:53058384|53058761
ORF Type ORF8
Protein Length 111
Nucleotide Length 333
Protein Sequence MPVEGHSGIGEQGRGGPQSPAHVPALTFDLLGAGGEDKLHGGLEGEPLIYGEWTVKNQAPGPYHTLLPACHLPATCLPPGLQPQATCLRLTSPGLVKLVLGESELWSVDGA
Nucleotide Sequence CTGCCTGTGGAAGGCCACTCGGGTATTGGGGAGCAGGGGAGAGGCGGCCCTCAGTCCCCAGCCCATGTCCCTGCTCTTACCTTTGATCTTCTCGGGGCTGGAGGAGAAGACAAACTCCACGGAGGCTTGGAAGGGGAACCTCTCATCTATGGGGAGTGGACAGTGAAGAACCAGGCCCCTGGCCCATACCACACTCTCCTGCCTGCCTGCCACCTGCCTGCCACCTGCCTGCCACCTGGACTCCAGCCCCAGGCCACTTGTCTCAGACTCACCAGTCCAGGCCTCGTCAAGCTGGTCCTTGGGGAAAGTGAGCTGTGGTCCGTGGATGGTGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab