CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53068908|53069164
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CATGACAACTGACAAATAAATCCTCCCAGATTGGGGGTTGCCGCCCCGTCGTGCCCAGGCAGGACCATTGTGGGACTGAAGAGCCCCAAGAACCCATCAGTCATCTCCCCTATCCTACCTCCACGCCCCTACTCCAACTTGAATGAGCAATGAGGGGCTGGGAACAGCTAAGCCTGCCTCTGTCTTCATTTTGACCTCTCCTCTCCCTCACATGAAATGAGGGAGTAGAGCTGGGCGTTCTGGGTCCCTGGGCTCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53068908|53069164 hsa-let-7b-5p 0 0 1
chr12:53068908|53069164 hsa-let-7b-3p 0 0 1
chr12:53068908|53069164 hsa-let-7c-5p 0 0 1
chr12:53068908|53069164 hsa-let-7c-3p 0 0 1
chr12:53068908|53069164 hsa-let-7d-5p 0 0 1
chr12:53068908|53069164 hsa-let-7d-3p 0 0 1
chr12:53068908|53069164 hsa-let-7e-5p 0 0 1
chr12:53068908|53069164 hsa-let-7e-3p 0 0 1
chr12:53068908|53069164 hsa-miR-26b-5p 0 0 1
chr12:53068908|53069164 hsa-miR-26b-3p 0 0 1
chr12:53068908|53069164 hsa-miR-98-5p 0 0 1
chr12:53068908|53069164 hsa-miR-98-3p 0 0 1
chr12:53068908|53069164 hsa-miR-223-5p 0 0 1
chr12:53068908|53069164 hsa-miR-223-3p 0 0 1
chr12:53068908|53069164 hsa-let-7g-5p 0 0 1
chr12:53068908|53069164 hsa-let-7g-3p 0 0 1
chr12:53068908|53069164 hsa-let-7i-5p 0 0 1
chr12:53068908|53069164 hsa-let-7i-3p 0 0 1
chr12:53068908|53069164 hsa-miR-143-5p 0 0 1
chr12:53068908|53069164 hsa-miR-143-3p 0 0 1
chr12:53068908|53069164 hsa-miR-612 0 0 1
chr12:53068908|53069164 hsa-miR-635 0 0 1
chr12:53068908|53069164 hsa-miR-661 0 0 1
chr12:53068908|53069164 hsa-miR-940 0 0 1
chr12:53068908|53069164 hsa-miR-1178-5p 0 0 1
chr12:53068908|53069164 hsa-miR-1178-3p 0 0 1
chr12:53068908|53069164 hsa-miR-1294 0 0 1
chr12:53068908|53069164 hsa-miR-1297 0 0 1
chr12:53068908|53069164 hsa-miR-1827 0 0 1
chr12:53068908|53069164 hsa-miR-188-3p 0 0 1
chr12:53068908|53069164 hsa-miR-455-3p 0 0 1
chr12:53068908|53069164 hsa-miR-26a 0 0 1
chr12:53068908|53069164 hsa-let-7a 0 0 1
chr12:53068908|53069164 hsa-let-7f 0 0 1
chr12:53068908|53069164 hsa-miR-1285 0 0 1
chr12:53068908|53069164 hsa-miR-1268 0 0 1
chr12:53068908|53069164 hsa-miR-1254 0 0 1
chr12:53068908|53069164 hsa-miR-768-3p 0 0 1
chr12:53068908|53069164 hsa-miR-608 1 0 0
chr12:53068908|53069164 hsa-miR-637 1 0 0
chr12:53068908|53069164 hsa-miR-1257 1 0 0
chr12:53068908|53069164 hsa-miR-1268a 1 1 0
chr12:53068908|53069164 hsa-miR-1275 1 1 0
chr12:53068908|53069164 hsa-miR-2861 1 0 0
chr12:53068908|53069164 hsa-miR-3175 1 0 0
chr12:53068908|53069164 hsa-miR-3196 1 1 0
chr12:53068908|53069164 hsa-miR-4298 1 0 0
chr12:53068908|53069164 hsa-miR-4259 1 0 0
chr12:53068908|53069164 hsa-miR-4260 1 1 0
chr12:53068908|53069164 hsa-miR-3646 1 0 0
chr12:53068908|53069164 hsa-miR-3936 1 0 0
chr12:53068908|53069164 hsa-miR-1268b 1 1 0
chr12:53068908|53069164 hsa-miR-4439 1 1 0
chr12:53068908|53069164 hsa-miR-4458 1 1 0
chr12:53068908|53069164 hsa-miR-3689c 0 1 0
chr12:53068908|53069164 hsa-miR-4488 1 0 0
chr12:53068908|53069164 hsa-miR-2392 1 0 0
chr12:53068908|53069164 hsa-miR-4510 0 1 0
chr12:53068908|53069164 hsa-miR-4516 1 0 0
chr12:53068908|53069164 hsa-miR-4644 1 0 0
chr12:53068908|53069164 hsa-miR-4651 1 0 0
chr12:53068908|53069164 hsa-miR-4654 1 0 0
chr12:53068908|53069164 hsa-miR-4688 1 0 0
chr12:53068908|53069164 hsa-miR-4698 0 1 0
chr12:53068908|53069164 hsa-miR-4706 1 0 0
chr12:53068908|53069164 hsa-miR-4739 1 0 0
chr12:53068908|53069164 hsa-miR-5191 0 1 0
chr12:53068908|53069164 hsa-miR-5572 1 0 0
chr12:53068908|53069164 hsa-miR-5698 1 0 0
chr12:53068908|53069164 hsa-miR-6085 1 0 0
chr12:53068908|53069164 hsa-miR-6086 1 0 0
chr12:53068908|53069164 hsa-miR-6088 1 0 0
chr12:53068908|53069164 hsa-miR-6127 0 1 0
chr12:53068908|53069164 hsa-miR-6130 0 1 0
chr12:53068908|53069164 hsa-miR-6133 1 1 0
chr12:53068908|53069164 hsa-miR-6860 0 1 0
chr12:53068908|53069164 hsa-miR-7704 1 0 0
chr12:53068908|53069164 hsa-miR-8085 1 0 0
chr12:53068908|53069164 hsa-miR-4433b-3p 1 0 0
chr12:53068908|53069164 hsa-miR-6734-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6747-5p 1 0 0
chr12:53068908|53069164 hsa-miR-3150a-3p 1 0 0
chr12:53068908|53069164 hsa-miR-6861-5p 0 1 0
chr12:53068908|53069164 hsa-miR-7106-5p 1 1 0
chr12:53068908|53069164 hsa-miR-6825-5p 1 0 0
chr12:53068908|53069164 hsa-miR-4687-3p 1 0 0
chr12:53068908|53069164 hsa-miR-27a-5p 0 1 0
chr12:53068908|53069164 hsa-miR-6510-5p 1 0 0
chr12:53068908|53069164 hsa-miR-3192-5p 1 1 0
chr12:53068908|53069164 hsa-miR-7847-3p 1 1 0
chr12:53068908|53069164 hsa-miR-6890-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6721-5p 1 0 0
chr12:53068908|53069164 hsa-miR-4677-5p 0 1 0
chr12:53068908|53069164 hsa-miR-197-5p 1 0 0
chr12:53068908|53069164 hsa-miR-432-5p 1 0 0
chr12:53068908|53069164 hsa-miR-3180-3p 1 1 0
chr12:53068908|53069164 hsa-miR-6793-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6796-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6805-5p 1 0 0
chr12:53068908|53069164 hsa-miR-23a-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6760-5p 0 1 0
chr12:53068908|53069164 hsa-miR-6881-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6782-5p 1 0 0
chr12:53068908|53069164 hsa-miR-3150b-3p 0 1 0
chr12:53068908|53069164 hsa-miR-6835-5p 1 0 0
chr12:53068908|53069164 hsa-miR-1229-5p 1 0 0
chr12:53068908|53069164 hsa-miR-296-3p 1 0 0
chr12:53068908|53069164 hsa-miR-877-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6824-5p 1 1 0
chr12:53068908|53069164 hsa-miR-6789-5p 1 1 0
chr12:53068908|53069164 hsa-miR-6769a-3p 0 1 0
chr12:53068908|53069164 hsa-miR-1289 0 1 0
chr12:53068908|53069164 hsa-miR-873-3p 1 0 0
chr12:53068908|53069164 hsa-miR-6741-3p 0 1 0
chr12:53068908|53069164 hsa-miR-625-5p 1 0 0
chr12:53068908|53069164 hsa-miR-7113-5p 0 1 0
chr12:53068908|53069164 hsa-miR-6857-3p 1 0 0
chr12:53068908|53069164 hsa-miR-4444 1 0 0
chr12:53068908|53069164 hsa-miR-6505-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6839-3p 0 1 0
chr12:53068908|53069164 hsa-miR-1273h-5p 1 0 0
chr12:53068908|53069164 hsa-miR-3689b-3p 0 1 0
chr12:53068908|53069164 hsa-miR-4763-3p 1 0 0
chr12:53068908|53069164 hsa-miR-6778-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6816-5p 1 1 0
chr12:53068908|53069164 hsa-miR-6870-5p 1 1 0
chr12:53068908|53069164 hsa-miR-6893-5p 0 1 0
chr12:53068908|53069164 hsa-miR-1343-5p 1 0 0
chr12:53068908|53069164 hsa-miR-3180 1 1 0
chr12:53068908|53069164 hsa-miR-6743-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6754-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6756-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6803-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6813-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6851-5p 1 1 0
chr12:53068908|53069164 hsa-miR-11181-3p 1 0 0
chr12:53068908|53069164 hsa-miR-1249-5p 1 1 0
chr12:53068908|53069164 hsa-miR-6751-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6779-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6788-5p 0 1 0
chr12:53068908|53069164 hsa-miR-6875-5p 0 1 0
chr12:53068908|53069164 hsa-miR-6879-5p 1 0 0
chr12:53068908|53069164 hsa-miR-7111-5p 1 0 0
chr12:53068908|53069164 hsa-miR-4728-5p 1 1 0
chr12:53068908|53069164 hsa-miR-5189-5p 0 1 0
chr12:53068908|53069164 hsa-miR-5196-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6780b-5p 1 0 0
chr12:53068908|53069164 hsa-miR-1237-5p 1 0 0
chr12:53068908|53069164 hsa-miR-4649-5p 1 0 0
chr12:53068908|53069164 hsa-miR-4745-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6729-5p 1 0 0
chr12:53068908|53069164 hsa-miR-6738-5p 1 1 0
chr12:53068908|53069164 hsa-miR-6848-5p 1 0 0
chr12:53068908|53069164 hsa-miR-3187-5p 0 1 0
chr12:53068908|53069164 hsa-miR-939-5p 1 0 0
chr12:53068908|53069164 hsa-miR-4758-5p 1 0 0
chr12:53068908|53069164 hsa-miR-4769-5p 1 0 0
chr12:53068908|53069164 hsa-miR-10394-3p 0 1 0
chr12:53068908|53069164 hsa-miR-1910-3p 0 1 0
chr12:53068908|53069164 hsa-miR-3198 1 0 0
chr12:53068908|53069164 hsa-miR-6731-5p 0 1 0
chr12:53068908|53069164 hsa-miR-3173-3p 1 0 0
chr12:53068908|53069164 hsa-miR-1295b-5p 0 1 0
chr12:53068908|53069164 hsa-miR-6855-3p 1 0 0
chr12:53068908|53069164 hsa-miR-5588-3p 0 1 0
chr12:53068908|53069164 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:53068908|53069164
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence MGVAAPSCPGRTIVGLKSPKNPSVISPILPPRPYSNLNEQ
Nucleotide Sequence TTGGGGGTTGCCGCCCCGTCGTGCCCAGGCAGGACCATTGTGGGACTGAAGAGCCCCAAGAACCCATCAGTCATCTCCCCTATCCTACCTCCACGCCCCTACTCCAACTTGAATGAGCAATGA
CircID chr12:53068908|53069164
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MSNEGLGTAKPASVFILTSPLPHMK
Nucleotide Sequence ATGAGCAATGAGGGGCTGGGAACAGCTAAGCCTGCCTCTGTCTTCATTTTGACCTCTCCTCTCCCTCACATGAAATGA
CircID chr12:53068908|53069164
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MTNKSSQIGGCRPVVPRQDHCGTEEPQEPISHLPYPTSTPLLQLE
Nucleotide Sequence CTGACAAATAAATCCTCCCAGATTGGGGGTTGCCGCCCCGTCGTGCCCAGGCAGGACCATTGTGGGACTGAAGAGCCCCAAGAACCCATCAGTCATCTCCCCTATCCTACCTCCACGCCCCTACTCCAACTTGAATGA
CircID chr12:53068908|53069164
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MTDGFLGLFSPTMVLPGHDGAATPNLGGFICQLS
Nucleotide Sequence ATGACTGATGGGTTCTTGGGGCTCTTCAGTCCCACAATGGTCCTGCCTGGGCACGACGGGGCGGCAACCCCCAATCTGGGAGGATTTATTTGTCAGTTGTCA
CircID chr12:53068908|53069164
ORF Type ORF5
Protein Length 33
Nucleotide Length 99
Protein Sequence MMGSWGSSVPQWSCLGTTGRQPPIWEDLFVSCH
Nucleotide Sequence CTGATGGGTTCTTGGGGCTCTTCAGTCCCACAATGGTCCTGCCTGGGCACGACGGGGCGGCAACCCCCAATCTGGGAGGATTTATTTGTCAGTTGTCAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab