CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53190377|53190558
Strand +
CircType exon
Host Gene ENSG00000139651.10;
Algorism CIRI2;
Sequence CCTCCAATGTCAAGCCATGGGCGTGATCAGTAGCTAAGTGATGACAAGGCTGTTGGGGGTGGACGGAAAAGACTTGGGGCAAAGCAGACTGTTTATAGCCTGAGCTGGTAGGGCCTGGTGCAGCAGCCTACCCGGAACTGGCACTACTCTTTCCCAGGTTCCCTGACTCTCTATCCTGGTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53190377|53190558 hsa-miR-212-5p 0 0 1
chr12:53190377|53190558 hsa-miR-212-3p 0 0 1
chr12:53190377|53190558 hsa-miR-132-5p 0 0 1
chr12:53190377|53190558 hsa-miR-132-3p 0 0 1
chr12:53190377|53190558 hsa-miR-135b-5p 0 0 1
chr12:53190377|53190558 hsa-miR-135b-3p 0 0 1
chr12:53190377|53190558 hsa-miR-484 0 0 1
chr12:53190377|53190558 hsa-miR-489-5p 0 0 1
chr12:53190377|53190558 hsa-miR-489-3p 0 0 1
chr12:53190377|53190558 hsa-miR-519e-5p 0 0 1
chr12:53190377|53190558 hsa-miR-519e-3p 0 0 1
chr12:53190377|53190558 hsa-miR-622 0 1 1
chr12:53190377|53190558 hsa-miR-634 0 0 1
chr12:53190377|53190558 hsa-miR-1264 0 1 1
chr12:53190377|53190558 hsa-miR-767-5p 0 0 1
chr12:53190377|53190558 hsa-miR-490-3p 0 0 1
chr12:53190377|53190558 hsa-miR-515-3p 0 0 1
chr12:53190377|53190558 hsa-miR-135a 0 0 1
chr12:53190377|53190558 hsa-miR-768-5p 0 0 1
chr12:53190377|53190558 hsa-miR-371-3p 0 0 1
chr12:53190377|53190558 hsa-miR-3153 0 1 0
chr12:53190377|53190558 hsa-miR-4270 1 1 0
chr12:53190377|53190558 hsa-miR-4449 1 0 0
chr12:53190377|53190558 hsa-miR-3976 0 1 0
chr12:53190377|53190558 hsa-miR-6081 1 0 0
chr12:53190377|53190558 hsa-miR-8085 0 1 0
chr12:53190377|53190558 hsa-miR-12128 0 1 0
chr12:53190377|53190558 hsa-miR-6861-5p 1 1 0
chr12:53190377|53190558 hsa-miR-6854-5p 0 1 0
chr12:53190377|53190558 hsa-miR-7851-3p 0 1 0
chr12:53190377|53190558 hsa-miR-6762-3p 0 1 0
chr12:53190377|53190558 hsa-miR-6806-5p 1 0 0
chr12:53190377|53190558 hsa-miR-197-5p 1 0 0
chr12:53190377|53190558 hsa-miR-3189-5p 1 0 0
chr12:53190377|53190558 hsa-miR-3691-3p 0 1 0
chr12:53190377|53190558 hsa-miR-3934-3p 0 1 0
chr12:53190377|53190558 hsa-miR-6740-5p 1 0 0
chr12:53190377|53190558 hsa-miR-3944-3p 1 0 0
chr12:53190377|53190558 hsa-miR-204-3p 0 1 0
chr12:53190377|53190558 hsa-miR-4640-5p 1 0 0
chr12:53190377|53190558 hsa-miR-6753-5p 1 0 0
chr12:53190377|53190558 hsa-miR-4733-3p 0 1 0
chr12:53190377|53190558 hsa-miR-937-5p 1 0 0
chr12:53190377|53190558 hsa-miR-3162-5p 1 0 0
chr12:53190377|53190558 hsa-miR-584-3p 1 0 0
chr12:53190377|53190558 hsa-miR-1911-3p 0 1 0
chr12:53190377|53190558 hsa-miR-4758-3p 1 0 0
chr12:53190377|53190558 hsa-miR-1537-5p 0 1 0
chr12:53190377|53190558 hsa-miR-1207-5p 1 0 0
chr12:53190377|53190558 hsa-miR-6743-5p 1 0 0
chr12:53190377|53190558 hsa-miR-6788-5p 0 1 0
chr12:53190377|53190558 hsa-miR-4725-3p 1 0 0
chr12:53190377|53190558 hsa-miR-4745-5p 1 0 0
chr12:53190377|53190558 hsa-miR-6735-5p 1 0 0
chr12:53190377|53190558 hsa-miR-3085-5p 1 0 0
chr12:53190377|53190558 hsa-miR-6739-5p 0 1 0
chr12:53190377|53190558 hsa-miR-4646-5p 0 1 0
chr12:53190377|53190558 hsa-miR-6750-5p 1 1 0
chr12:53190377|53190558 hsa-miR-6805-3p 1 0 0
chr12:53190377|53190558 hsa-miR-6775-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:53190377|53190558
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MVGPGAAAYPELALLFPRFPDSLSWS
Nucleotide Sequence CTGGTAGGGCCTGGTGCAGCAGCCTACCCGGAACTGGCACTACTCTTTCCCAGGTTCCCTGACTCTCTATCCTGGTCT
CircID chr12:53190377|53190558
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MPQVFSVHPQQPCHHLATDHAHGLTLE
Nucleotide Sequence TTGCCCCAAGTCTTTTCCGTCCACCCCCAACAGCCTTGTCATCACTTAGCTACTGATCACGCCCATGGCTTGACATTGGAG
CircID chr12:53190377|53190558
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MLHQALPAQAINSLLCPKSFPSTPNSLVIT
Nucleotide Sequence CTGCTGCACCAGGCCCTACCAGCTCAGGCTATAAACAGTCTGCTTTGCCCCAAGTCTTTTCCGTCCACCCCCAACAGCCTTGTCATCACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab