CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53209319|53209417
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCACTCACTGCCACCTGCACTGTTACCTTCTTTCCGAATATCTGTCCTTGCTCCCACACGCCTTCCCTCTGCAACACGCCTTTGCAGTGCCTTTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53209319|53209417 hsa-miR-148a-5p 0 0 1
chr12:53209319|53209417 hsa-miR-148a-3p 0 0 1
chr12:53209319|53209417 hsa-miR-34a-5p 0 0 1
chr12:53209319|53209417 hsa-miR-34a-3p 0 0 1
chr12:53209319|53209417 hsa-miR-212-5p 0 0 1
chr12:53209319|53209417 hsa-miR-212-3p 0 0 1
chr12:53209319|53209417 hsa-miR-132-5p 0 0 1
chr12:53209319|53209417 hsa-miR-132-3p 0 0 1
chr12:53209319|53209417 hsa-miR-152-5p 0 0 1
chr12:53209319|53209417 hsa-miR-152-3p 0 0 1
chr12:53209319|53209417 hsa-miR-148b-5p 0 0 1
chr12:53209319|53209417 hsa-miR-148b-3p 0 0 1
chr12:53209319|53209417 hsa-miR-449a 0 0 1
chr12:53209319|53209417 hsa-miR-527 0 0 1
chr12:53209319|53209417 hsa-miR-506-5p 0 0 1
chr12:53209319|53209417 hsa-miR-506-3p 0 0 1
chr12:53209319|53209417 hsa-miR-449b-5p 0 0 1
chr12:53209319|53209417 hsa-miR-449b-3p 0 0 1
chr12:53209319|53209417 hsa-miR-657 0 0 1
chr12:53209319|53209417 hsa-miR-920 1 0 1
chr12:53209319|53209417 hsa-miR-34c-5p 0 0 1
chr12:53209319|53209417 hsa-miR-518a-5p 0 0 1
chr12:53209319|53209417 hsa-miR-124 0 0 1
chr12:53209319|53209417 hsa-miR-194 0 0 1
chr12:53209319|53209417 hsa-miR-658 1 0 0
chr12:53209319|53209417 hsa-miR-1183 1 0 0
chr12:53209319|53209417 hsa-miR-1268a 1 0 0
chr12:53209319|53209417 hsa-miR-3131 1 0 0
chr12:53209319|53209417 hsa-miR-3138 1 0 0
chr12:53209319|53209417 hsa-miR-3141 1 0 0
chr12:53209319|53209417 hsa-miR-3153 1 0 0
chr12:53209319|53209417 hsa-miR-3196 1 0 0
chr12:53209319|53209417 hsa-miR-4298 1 0 0
chr12:53209319|53209417 hsa-miR-4300 1 0 0
chr12:53209319|53209417 hsa-miR-4253 1 0 0
chr12:53209319|53209417 hsa-miR-4271 1 0 0
chr12:53209319|53209417 hsa-miR-3650 1 0 0
chr12:53209319|53209417 hsa-miR-3659 1 0 0
chr12:53209319|53209417 hsa-miR-3936 1 0 0
chr12:53209319|53209417 hsa-miR-1268b 1 0 0
chr12:53209319|53209417 hsa-miR-4436a 1 0 0
chr12:53209319|53209417 hsa-miR-4443 1 0 0
chr12:53209319|53209417 hsa-miR-4510 1 0 0
chr12:53209319|53209417 hsa-miR-4533 1 0 0
chr12:53209319|53209417 hsa-miR-4706 1 0 0
chr12:53209319|53209417 hsa-miR-4739 1 0 0
chr12:53209319|53209417 hsa-miR-6081 1 0 0
chr12:53209319|53209417 hsa-miR-6090 1 0 0
chr12:53209319|53209417 hsa-miR-6125 1 0 0
chr12:53209319|53209417 hsa-miR-6127 1 0 0
chr12:53209319|53209417 hsa-miR-6129 1 0 0
chr12:53209319|53209417 hsa-miR-6133 1 0 0
chr12:53209319|53209417 hsa-miR-7150 1 0 0
chr12:53209319|53209417 hsa-miR-8072 1 0 0
chr12:53209319|53209417 hsa-miR-8085 1 0 0
chr12:53209319|53209417 hsa-miR-6734-5p 1 0 0
chr12:53209319|53209417 hsa-miR-504-3p 1 0 0
chr12:53209319|53209417 hsa-miR-6747-5p 1 0 0
chr12:53209319|53209417 hsa-miR-7106-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6825-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6510-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6757-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6873-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6867-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6730-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6727-5p 1 0 0
chr12:53209319|53209417 hsa-miR-7845-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6748-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6796-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6827-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6798-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6760-5p 1 0 0
chr12:53209319|53209417 hsa-miR-2467-3p 1 0 0
chr12:53209319|53209417 hsa-miR-6782-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6810-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6740-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4640-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6516-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6847-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4743-5p 1 0 0
chr12:53209319|53209417 hsa-miR-149-3p 1 0 0
chr12:53209319|53209417 hsa-miR-6824-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6800-5p 1 0 0
chr12:53209319|53209417 hsa-miR-3158-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4740-5p 1 0 0
chr12:53209319|53209417 hsa-miR-5010-5p 1 0 0
chr12:53209319|53209417 hsa-miR-483-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4520-3p 1 0 0
chr12:53209319|53209417 hsa-miR-1233-5p 1 1 0
chr12:53209319|53209417 hsa-miR-4763-3p 1 0 0
chr12:53209319|53209417 hsa-miR-6769b-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6778-5p 1 1 0
chr12:53209319|53209417 hsa-miR-6865-5p 0 1 0
chr12:53209319|53209417 hsa-miR-6726-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6752-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6754-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6815-5p 0 1 0
chr12:53209319|53209417 hsa-miR-7110-5p 1 0 0
chr12:53209319|53209417 hsa-miR-10401-5p 1 1 0
chr12:53209319|53209417 hsa-miR-1249-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6722-3p 1 0 0
chr12:53209319|53209417 hsa-miR-6779-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6780a-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6797-5p 1 1 0
chr12:53209319|53209417 hsa-miR-6808-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6875-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6879-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4728-5p 1 1 0
chr12:53209319|53209417 hsa-miR-5196-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6780b-5p 1 0 0
chr12:53209319|53209417 hsa-miR-1909-3p 1 0 0
chr12:53209319|53209417 hsa-miR-328-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4632-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4725-3p 1 0 0
chr12:53209319|53209417 hsa-miR-4726-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6735-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6794-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6858-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6883-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4436b-3p 1 0 0
chr12:53209319|53209417 hsa-miR-1238-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4758-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4769-5p 1 0 0
chr12:53209319|53209417 hsa-miR-3173-3p 0 1 0
chr12:53209319|53209417 hsa-miR-4747-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6876-5p 0 1 0
chr12:53209319|53209417 hsa-miR-6891-5p 1 0 0
chr12:53209319|53209417 hsa-miR-4716-3p 1 0 0
chr12:53209319|53209417 hsa-miR-6750-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6766-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6785-5p 1 0 0
chr12:53209319|53209417 hsa-miR-518e-5p 1 0 0
chr12:53209319|53209417 hsa-miR-519a-5p 1 0 0
chr12:53209319|53209417 hsa-miR-519b-5p 1 0 0
chr12:53209319|53209417 hsa-miR-519c-5p 1 0 0
chr12:53209319|53209417 hsa-miR-522-5p 1 0 0
chr12:53209319|53209417 hsa-miR-523-5p 1 0 0
chr12:53209319|53209417 hsa-miR-6822-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:53209319|53209417
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MPPALLPSFRISVLAPTRLPSATRLCSAFG
Nucleotide Sequence CTGCCACCTGCACTGTTACCTTCTTTCCGAATATCTGTCCTTGCTCCCACACGCCTTCCCTCTGCAACACGCCTTTGCAGTGCCTTTGGC
CircID chr12:53209319|53209417
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MHCYLLSEYLSLLPHAFPLQHAFAVPL
Nucleotide Sequence CTGCACTGTTACCTTCTTTCCGAATATCTGTCCTTGCTCCCACACGCCTTCCCTCTGCAACACGCCTTTGCAGTGCCTTTG
CircID chr12:53209319|53209417
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MQRRVAEGRRVGARTDIRKEGNSAGGSEW
Nucleotide Sequence CTGCAAAGGCGTGTTGCAGAGGGAAGGCGTGTGGGAGCAAGGACAGATATTCGGAAAGAAGGTAACAGTGCAGGTGGCAGTGAGTGG
CircID chr12:53209319|53209417
ORF Type ORF4
Protein Length 25
Nucleotide Length 75
Protein Sequence MQREGVWEQGQIFGKKVTVQVAVSG
Nucleotide Sequence TTGCAGAGGGAAGGCGTGTGGGAGCAAGGACAGATATTCGGAAAGAAGGTAACAGTGCAGGTGGCAGTGAGTGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab