CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53252963|53253171
Strand -
CircType exon
Host Gene ENSG00000182544.8;
Algorism CIRI2;
Sequence TGGACTTCTATCAGGTCTACTTCCTGGCCCTGGCAGCTGATTGGCTTCAGGCCCCCTACCTCTATAAACTCTACCAGCATTACTACTTCCTGGAAGGTCAAATTGCCATCCTCTATGTCTGTGGCCTTGCCTCTACAGTCCTCTTTGGCCTAGTGGCCTCCTCCCTTGTGGATTGGCTGGGTCGCAAGAATTCTTGTGTCCTCTTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53252963|53253171 hsa-let-7b-5p 0 0 1
chr12:53252963|53253171 hsa-let-7b-3p 0 0 1
chr12:53252963|53253171 hsa-let-7c-5p 0 0 1
chr12:53252963|53253171 hsa-let-7c-3p 0 0 1
chr12:53252963|53253171 hsa-let-7d-5p 0 0 1
chr12:53252963|53253171 hsa-let-7d-3p 0 0 1
chr12:53252963|53253171 hsa-let-7e-5p 0 0 1
chr12:53252963|53253171 hsa-let-7e-3p 0 0 1
chr12:53252963|53253171 hsa-miR-22-5p 0 0 1
chr12:53252963|53253171 hsa-miR-22-3p 0 0 1
chr12:53252963|53253171 hsa-miR-98-5p 0 0 1
chr12:53252963|53253171 hsa-miR-98-3p 0 0 1
chr12:53252963|53253171 hsa-miR-192-5p 0 0 1
chr12:53252963|53253171 hsa-miR-192-3p 0 0 1
chr12:53252963|53253171 hsa-miR-215-5p 0 0 1
chr12:53252963|53253171 hsa-miR-215-3p 0 0 1
chr12:53252963|53253171 hsa-let-7g-5p 0 0 1
chr12:53252963|53253171 hsa-let-7g-3p 0 0 1
chr12:53252963|53253171 hsa-let-7i-5p 0 0 1
chr12:53252963|53253171 hsa-let-7i-3p 0 0 1
chr12:53252963|53253171 hsa-miR-155-5p 0 0 1
chr12:53252963|53253171 hsa-miR-155-3p 0 0 1
chr12:53252963|53253171 hsa-miR-376c-5p 0 0 1
chr12:53252963|53253171 hsa-miR-376c-3p 0 0 1
chr12:53252963|53253171 hsa-miR-379-5p 0 0 1
chr12:53252963|53253171 hsa-miR-379-3p 0 0 1
chr12:53252963|53253171 hsa-miR-551a 0 0 1
chr12:53252963|53253171 hsa-miR-551b-5p 0 0 1
chr12:53252963|53253171 hsa-miR-551b-3p 0 0 1
chr12:53252963|53253171 hsa-miR-583 0 0 1
chr12:53252963|53253171 hsa-miR-411-5p 0 0 1
chr12:53252963|53253171 hsa-miR-411-3p 0 0 1
chr12:53252963|53253171 hsa-miR-765 0 0 1
chr12:53252963|53253171 hsa-miR-877-5p 0 0 1
chr12:53252963|53253171 hsa-miR-877-3p 0 0 1
chr12:53252963|53253171 hsa-miR-665 0 0 1
chr12:53252963|53253171 hsa-miR-1183 0 1 1
chr12:53252963|53253171 hsa-miR-1253 0 0 1
chr12:53252963|53253171 hsa-miR-1321 0 0 1
chr12:53252963|53253171 hsa-miR-1197 0 0 1
chr12:53252963|53253171 hsa-miR-1207-3p 0 0 1
chr12:53252963|53253171 hsa-miR-138 0 0 1
chr12:53252963|53253171 hsa-let-7a 0 0 1
chr12:53252963|53253171 hsa-let-7f 0 0 1
chr12:53252963|53253171 hsa-miR-3131 1 1 0
chr12:53252963|53253171 hsa-miR-3169 1 1 0
chr12:53252963|53253171 hsa-miR-4270 1 0 0
chr12:53252963|53253171 hsa-miR-4278 0 1 0
chr12:53252963|53253171 hsa-miR-3918 1 1 0
chr12:53252963|53253171 hsa-miR-3923 1 0 0
chr12:53252963|53253171 hsa-miR-4458 0 1 0
chr12:53252963|53253171 hsa-miR-4462 1 0 0
chr12:53252963|53253171 hsa-miR-4510 1 0 0
chr12:53252963|53253171 hsa-miR-4534 1 0 0
chr12:53252963|53253171 hsa-miR-4739 1 1 0
chr12:53252963|53253171 hsa-miR-4741 1 0 0
chr12:53252963|53253171 hsa-miR-6133 1 0 0
chr12:53252963|53253171 hsa-miR-8052 1 1 0
chr12:53252963|53253171 hsa-miR-8075 1 0 0
chr12:53252963|53253171 hsa-miR-12114 1 0 0
chr12:53252963|53253171 hsa-miR-12127 1 0 0
chr12:53252963|53253171 hsa-miR-138-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6809-5p 0 1 0
chr12:53252963|53253171 hsa-miR-7106-5p 0 1 0
chr12:53252963|53253171 hsa-miR-6894-5p 1 1 0
chr12:53252963|53253171 hsa-miR-3692-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6089 1 0 0
chr12:53252963|53253171 hsa-miR-6880-5p 1 0 0
chr12:53252963|53253171 hsa-miR-7847-3p 1 0 0
chr12:53252963|53253171 hsa-miR-4695-5p 0 1 0
chr12:53252963|53253171 hsa-miR-4753-5p 0 1 0
chr12:53252963|53253171 hsa-miR-197-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6772-5p 1 0 0
chr12:53252963|53253171 hsa-miR-5006-5p 1 1 0
chr12:53252963|53253171 hsa-miR-4640-5p 1 1 0
chr12:53252963|53253171 hsa-miR-4650-3p 1 0 0
chr12:53252963|53253171 hsa-miR-4732-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6847-5p 1 1 0
chr12:53252963|53253171 hsa-miR-6830-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6824-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6789-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6802-5p 1 1 0
chr12:53252963|53253171 hsa-miR-7843-3p 0 1 0
chr12:53252963|53253171 hsa-miR-6781-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6866-5p 0 1 0
chr12:53252963|53253171 hsa-miR-6895-5p 0 1 0
chr12:53252963|53253171 hsa-miR-3922-5p 0 1 0
chr12:53252963|53253171 hsa-let-7a-5p 1 1 0
chr12:53252963|53253171 hsa-miR-4717-5p 0 1 0
chr12:53252963|53253171 hsa-miR-1233-5p 1 0 0
chr12:53252963|53253171 hsa-miR-4763-3p 1 0 0
chr12:53252963|53253171 hsa-miR-6778-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6787-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6743-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6752-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6754-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6756-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6842-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6851-5p 1 0 0
chr12:53252963|53253171 hsa-miR-1249-5p 1 0 0
chr12:53252963|53253171 hsa-miR-7111-5p 1 0 0
chr12:53252963|53253171 hsa-miR-4728-5p 1 0 0
chr12:53252963|53253171 hsa-miR-5196-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6780b-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6836-5p 0 1 0
chr12:53252963|53253171 hsa-miR-10526-3p 0 1 0
chr12:53252963|53253171 hsa-miR-1237-5p 1 0 0
chr12:53252963|53253171 hsa-miR-328-5p 1 0 0
chr12:53252963|53253171 hsa-miR-4685-5p 1 1 0
chr12:53252963|53253171 hsa-miR-4726-5p 1 1 0
chr12:53252963|53253171 hsa-miR-6738-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6795-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6848-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6858-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6887-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6831-5p 1 1 0
chr12:53252963|53253171 hsa-miR-6885-5p 1 0 0
chr12:53252963|53253171 hsa-miR-3173-3p 1 0 0
chr12:53252963|53253171 hsa-miR-4747-5p 1 0 0
chr12:53252963|53253171 hsa-miR-6762-5p 0 1 0
chr12:53252963|53253171 hsa-miR-320a-3p 1 0 0
chr12:53252963|53253171 hsa-miR-320b 1 0 0
chr12:53252963|53253171 hsa-miR-6837-5p 0 1 0
chr12:53252963|53253171 hsa-miR-4756-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:53252963|53253171
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MIGFRPPTSINSTSITTSWKVKLPSSMSVALPLQSSLA
Nucleotide Sequence CTGATTGGCTTCAGGCCCCCTACCTCTATAAACTCTACCAGCATTACTACTTCCTGGAAGGTCAAATTGCCATCCTCTATGTCTGTGGCCTTGCCTCTACAGTCCTCTTTGGCCTAG
CircID chr12:53252963|53253171
ORF Type ORF2
Protein Length 30
Nucleotide Length 90
Protein Sequence MWPCLYSPLWPSGLLPCGLAGSQEFLCPLL
Nucleotide Sequence CTGTGGCCTTGCCTCTACAGTCCTCTTTGGCCTAGTGGCCTCCTCCCTTGTGGATTGGCTGGGTCGCAAGAATTCTTGTGTCCTCTTCTC
CircID chr12:53252963|53253171
ORF Type ORF3
Protein Length 62
Nucleotide Length 186
Protein Sequence MALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFS
Nucleotide Sequence CTGGCCCTGGCAGCTGATTGGCTTCAGGCCCCCTACCTCTATAAACTCTACCAGCATTACTACTTCCTGGAAGGTCAAATTGCCATCCTCTATGTCTGTGGCCTTGCCTCTACAGTCCTCTTTGGCCTAGTGGCCTCCTCCCTTGTGGATTGGCTGGGTCGCAAGAATTCTTGTGTCCTCTTCTCC
CircID chr12:53252963|53253171
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MTFQEVVMLVEFIEVGGLKPISCQGQEVDLIEV
Nucleotide Sequence TTGACCTTCCAGGAAGTAGTAATGCTGGTAGAGTTTATAGAGGTAGGGGGCCTGAAGCCAATCAGCTGCCAGGGCCAGGAAGTAGACCTGATAGAAGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab