CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53253760|53253863
Strand -
CircType exon
Host Gene ENSG00000182544.8;
Algorism CIRI2;
Sequence CTTCAGCCCATGCACCTGCTGTCCCTTGCTGTGCTCATCGTCGTCTTCTCTCTCTTCATGTTGACTTTCTCTACCAGCCCAGGCCAGGAGAGTCCGGTGGAGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53253760|53253863 hsa-miR-214-5p 0 0 1
chr12:53253760|53253863 hsa-miR-214-3p 0 0 1
chr12:53253760|53253863 hsa-miR-379-5p 0 0 1
chr12:53253760|53253863 hsa-miR-379-3p 0 0 1
chr12:53253760|53253863 hsa-miR-505-5p 0 0 1
chr12:53253760|53253863 hsa-miR-505-3p 0 0 1
chr12:53253760|53253863 hsa-miR-661 0 0 1
chr12:53253760|53253863 hsa-miR-1253 0 0 1
chr12:53253760|53253863 hsa-miR-638 1 0 0
chr12:53253760|53253863 hsa-miR-762 1 0 0
chr12:53253760|53253863 hsa-miR-765 1 0 0
chr12:53253760|53253863 hsa-miR-1538 1 0 0
chr12:53253760|53253863 hsa-miR-2861 1 0 0
chr12:53253760|53253863 hsa-miR-3132 1 0 0
chr12:53253760|53253863 hsa-miR-3176 0 1 0
chr12:53253760|53253863 hsa-miR-4298 1 0 0
chr12:53253760|53253863 hsa-miR-3665 0 1 0
chr12:53253760|53253863 hsa-miR-378g 0 1 0
chr12:53253760|53253863 hsa-miR-4475 0 1 0
chr12:53253760|53253863 hsa-miR-4498 1 1 0
chr12:53253760|53253863 hsa-miR-4505 1 0 0
chr12:53253760|53253863 hsa-miR-4507 1 0 0
chr12:53253760|53253863 hsa-miR-4510 1 0 0
chr12:53253760|53253863 hsa-miR-1587 1 0 0
chr12:53253760|53253863 hsa-miR-4644 1 1 0
chr12:53253760|53253863 hsa-miR-4656 1 0 0
chr12:53253760|53253863 hsa-miR-4688 1 0 0
chr12:53253760|53253863 hsa-miR-4689 1 0 0
chr12:53253760|53253863 hsa-miR-4741 1 0 0
chr12:53253760|53253863 hsa-miR-5090 1 0 0
chr12:53253760|53253863 hsa-miR-5739 1 0 0
chr12:53253760|53253863 hsa-miR-5787 1 0 0
chr12:53253760|53253863 hsa-miR-6088 1 0 0
chr12:53253760|53253863 hsa-miR-8060 1 1 0
chr12:53253760|53253863 hsa-miR-8085 1 1 0
chr12:53253760|53253863 hsa-miR-8089 1 0 0
chr12:53253760|53253863 hsa-miR-211-3p 1 0 0
chr12:53253760|53253863 hsa-miR-6861-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6510-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6728-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6880-5p 1 0 0
chr12:53253760|53253863 hsa-miR-4709-3p 1 0 0
chr12:53253760|53253863 hsa-miR-3622b-5p 1 0 0
chr12:53253760|53253863 hsa-miR-197-5p 1 0 0
chr12:53253760|53253863 hsa-miR-7845-5p 1 1 0
chr12:53253760|53253863 hsa-miR-6845-3p 0 1 0
chr12:53253760|53253863 hsa-miR-6829-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6770-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6760-5p 1 1 0
chr12:53253760|53253863 hsa-miR-6810-5p 1 0 0
chr12:53253760|53253863 hsa-miR-1226-5p 1 0 0
chr12:53253760|53253863 hsa-miR-4690-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6823-5p 1 0 0
chr12:53253760|53253863 hsa-miR-92b-5p 1 0 0
chr12:53253760|53253863 hsa-miR-877-5p 1 0 0
chr12:53253760|53253863 hsa-miR-4732-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6749-5p 1 0 0
chr12:53253760|53253863 hsa-miR-3202 1 0 0
chr12:53253760|53253863 hsa-miR-4446-3p 1 0 0
chr12:53253760|53253863 hsa-miR-149-3p 1 0 0
chr12:53253760|53253863 hsa-miR-3120-3p 0 1 0
chr12:53253760|53253863 hsa-miR-5197-3p 1 0 0
chr12:53253760|53253863 hsa-miR-3177-3p 1 0 0
chr12:53253760|53253863 hsa-miR-5001-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6743-5p 1 0 0
chr12:53253760|53253863 hsa-miR-7107-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6722-3p 1 0 0
chr12:53253760|53253863 hsa-miR-6754-3p 0 1 0
chr12:53253760|53253863 hsa-miR-3620-5p 1 1 0
chr12:53253760|53253863 hsa-miR-5189-5p 1 0 0
chr12:53253760|53253863 hsa-miR-1909-3p 1 0 0
chr12:53253760|53253863 hsa-miR-4632-5p 1 0 0
chr12:53253760|53253863 hsa-miR-4685-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6858-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6831-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6731-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6758-5p 1 1 0
chr12:53253760|53253863 hsa-miR-6856-5p 1 0 0
chr12:53253760|53253863 hsa-miR-6750-5p 1 0 0
chr12:53253760|53253863 hsa-miR-3619-5p 1 1 0
chr12:53253760|53253863 hsa-miR-1255b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr12:53253760|53253863
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MHLLSLAVLIVVFSLFMLTFSTSPGQESPVE
Nucleotide Sequence ATGCACCTGCTGTCCCTTGCTGTGCTCATCGTCGTCTTCTCTCTCTTCATGTTGACTTTCTCTACCAGCCCAGGCCAGGAGAGTCCGGTGGAG
CircID chr12:53253760|53253863
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MAWAGRESQHEEREDDDEHSKGQQVHGLK
Nucleotide Sequence CTGGCCTGGGCTGGTAGAGAAAGTCAACATGAAGAGAGAGAAGACGACGATGAGCACAGCAAGGGACAGCAGGTGCATGGGCTGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab