CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53299800|53300193
Strand -
CircType exon
Host Gene ENSG00000257605.2;
Algorism CIRI2;
Sequence CCGGCACCGCATGCTCGGTCCAGAGTCCGTCCCGCCCCCAAAACGATCCCGCAGCAAACTCATGGCACCGCCCCGAATCGGGACGCACAATGGCACCTTCCACTGCGACGAGGCACTGGCATGCGCACTGCTTCGCCTCCTGCCGGAGTACCGGGTACGGTCCGCGAAAAGTGACCCTGGGACTGCGTGCATGCATGCCTCCGGGGTGGATGGCATTCCGCCAACAGGGTCACTCCGATAGCGCCCGGCAGCCCAAGCACCCTTCCTACCCTTCCTGCCTCCCTGAAGTCCAGCATTAATCCCCTACCCGGCGACACCCGGCAGCCCCTTCACCCCTGTGTACCTCGCAGGATGCAGAGATTGTGCGGACCCGGGATCCCGAAAAACTCGCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53299800|53300193 hsa-miR-18a-5p 0 0 1
chr12:53299800|53300193 hsa-miR-18a-3p 0 0 1
chr12:53299800|53300193 hsa-miR-10a-5p 0 0 1
chr12:53299800|53300193 hsa-miR-10a-3p 0 0 1
chr12:53299800|53300193 hsa-miR-10b-5p 0 0 1
chr12:53299800|53300193 hsa-miR-10b-3p 0 0 1
chr12:53299800|53300193 hsa-miR-210-5p 0 0 1
chr12:53299800|53300193 hsa-miR-210-3p 0 0 1
chr12:53299800|53300193 hsa-miR-184 0 0 1
chr12:53299800|53300193 hsa-miR-155-5p 0 0 1
chr12:53299800|53300193 hsa-miR-155-3p 0 0 1
chr12:53299800|53300193 hsa-miR-422a 1 1 1
chr12:53299800|53300193 hsa-miR-18b-5p 0 0 1
chr12:53299800|53300193 hsa-miR-18b-3p 0 0 1
chr12:53299800|53300193 hsa-miR-519e-5p 0 0 1
chr12:53299800|53300193 hsa-miR-519e-3p 0 0 1
chr12:53299800|53300193 hsa-miR-504-5p 0 0 1
chr12:53299800|53300193 hsa-miR-504-3p 0 0 1
chr12:53299800|53300193 hsa-miR-635 0 0 1
chr12:53299800|53300193 hsa-miR-636 0 1 1
chr12:53299800|53300193 hsa-miR-638 1 1 1
chr12:53299800|53300193 hsa-miR-650 1 1 1
chr12:53299800|53300193 hsa-miR-147b-5p 0 0 1
chr12:53299800|53300193 hsa-miR-147b-3p 0 0 1
chr12:53299800|53300193 hsa-miR-216b-5p 0 0 1
chr12:53299800|53300193 hsa-miR-216b-3p 0 0 1
chr12:53299800|53300193 hsa-miR-933 0 0 1
chr12:53299800|53300193 hsa-miR-940 0 0 1
chr12:53299800|53300193 hsa-miR-1181 0 0 1
chr12:53299800|53300193 hsa-miR-1287-5p 0 0 1
chr12:53299800|53300193 hsa-miR-1287-3p 0 0 1
chr12:53299800|53300193 hsa-miR-1275 0 0 1
chr12:53299800|53300193 hsa-miR-1321 0 0 1
chr12:53299800|53300193 hsa-miR-1825 0 1 1
chr12:53299800|53300193 hsa-miR-1827 0 0 1
chr12:53299800|53300193 hsa-miR-324-5p 0 0 1
chr12:53299800|53300193 hsa-miR-941 0 0 1
chr12:53299800|53300193 hsa-miR-515-3p 0 0 1
chr12:53299800|53300193 hsa-miR-1274b 0 0 1
chr12:53299800|53300193 hsa-miR-220c 0 0 1
chr12:53299800|53300193 hsa-miR-378 0 0 1
chr12:53299800|53300193 hsa-miR-608 1 0 0
chr12:53299800|53300193 hsa-miR-637 1 0 0
chr12:53299800|53300193 hsa-miR-639 1 0 0
chr12:53299800|53300193 hsa-miR-663a 1 1 0
chr12:53299800|53300193 hsa-miR-762 1 0 0
chr12:53299800|53300193 hsa-miR-1183 1 0 0
chr12:53299800|53300193 hsa-miR-1293 1 0 0
chr12:53299800|53300193 hsa-miR-1269a 1 0 0
chr12:53299800|53300193 hsa-miR-1469 1 0 0
chr12:53299800|53300193 hsa-miR-3132 1 0 0
chr12:53299800|53300193 hsa-miR-378b 1 1 0
chr12:53299800|53300193 hsa-miR-3141 1 0 0
chr12:53299800|53300193 hsa-miR-3196 1 1 0
chr12:53299800|53300193 hsa-miR-378c 1 1 0
chr12:53299800|53300193 hsa-miR-4322 1 0 0
chr12:53299800|53300193 hsa-miR-4321 1 0 0
chr12:53299800|53300193 hsa-miR-4270 1 1 0
chr12:53299800|53300193 hsa-miR-3907 1 0 0
chr12:53299800|53300193 hsa-miR-378e 1 1 0
chr12:53299800|53300193 hsa-miR-378f 1 1 0
chr12:53299800|53300193 hsa-miR-4429 1 0 0
chr12:53299800|53300193 hsa-miR-4440 1 0 0
chr12:53299800|53300193 hsa-miR-4449 1 1 0
chr12:53299800|53300193 hsa-miR-4450 1 0 0
chr12:53299800|53300193 hsa-miR-4458 1 0 0
chr12:53299800|53300193 hsa-miR-378h 0 1 0
chr12:53299800|53300193 hsa-miR-4466 1 0 0
chr12:53299800|53300193 hsa-miR-4476 0 1 0
chr12:53299800|53300193 hsa-miR-3689c 0 1 0
chr12:53299800|53300193 hsa-miR-4488 1 1 0
chr12:53299800|53300193 hsa-miR-4505 1 0 0
chr12:53299800|53300193 hsa-miR-4507 1 0 0
chr12:53299800|53300193 hsa-miR-4514 1 0 0
chr12:53299800|53300193 hsa-miR-4519 0 1 0
chr12:53299800|53300193 hsa-miR-1269b 1 1 0
chr12:53299800|53300193 hsa-miR-4525 1 0 0
chr12:53299800|53300193 hsa-miR-4533 1 0 0
chr12:53299800|53300193 hsa-miR-378i 1 1 0
chr12:53299800|53300193 hsa-miR-4651 1 0 0
chr12:53299800|53300193 hsa-miR-4654 1 0 0
chr12:53299800|53300193 hsa-miR-4656 1 0 0
chr12:53299800|53300193 hsa-miR-4674 1 0 0
chr12:53299800|53300193 hsa-miR-4688 1 0 0
chr12:53299800|53300193 hsa-miR-4706 1 0 0
chr12:53299800|53300193 hsa-miR-4730 0 1 0
chr12:53299800|53300193 hsa-miR-4734 1 1 0
chr12:53299800|53300193 hsa-miR-4736 1 0 0
chr12:53299800|53300193 hsa-miR-4739 1 1 0
chr12:53299800|53300193 hsa-miR-4741 1 1 0
chr12:53299800|53300193 hsa-miR-4767 1 0 0
chr12:53299800|53300193 hsa-miR-5090 1 0 0
chr12:53299800|53300193 hsa-miR-5194 1 0 0
chr12:53299800|53300193 hsa-miR-5572 1 0 0
chr12:53299800|53300193 hsa-miR-5787 1 0 0
chr12:53299800|53300193 hsa-miR-6068 0 1 0
chr12:53299800|53300193 hsa-miR-6081 1 1 0
chr12:53299800|53300193 hsa-miR-6085 0 1 0
chr12:53299800|53300193 hsa-miR-6133 1 0 0
chr12:53299800|53300193 hsa-miR-6860 1 0 0
chr12:53299800|53300193 hsa-miR-7704 1 0 0
chr12:53299800|53300193 hsa-miR-8068 1 1 0
chr12:53299800|53300193 hsa-miR-8072 1 0 0
chr12:53299800|53300193 hsa-miR-9901 1 0 0
chr12:53299800|53300193 hsa-miR-12121 1 0 0
chr12:53299800|53300193 hsa-miR-12128 1 1 0
chr12:53299800|53300193 hsa-miR-211-3p 1 0 0
chr12:53299800|53300193 hsa-miR-6765-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6861-5p 1 0 0
chr12:53299800|53300193 hsa-miR-7106-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6825-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6799-5p 1 0 0
chr12:53299800|53300193 hsa-miR-8071 1 0 0
chr12:53299800|53300193 hsa-miR-6515-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6089 1 0 0
chr12:53299800|53300193 hsa-miR-4695-5p 1 1 0
chr12:53299800|53300193 hsa-miR-4722-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6730-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6741-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6727-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6721-5p 1 0 0
chr12:53299800|53300193 hsa-miR-197-5p 1 0 0
chr12:53299800|53300193 hsa-let-7i-3p 0 1 0
chr12:53299800|53300193 hsa-miR-7108-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6768-5p 0 1 0
chr12:53299800|53300193 hsa-miR-3180-3p 1 1 0
chr12:53299800|53300193 hsa-miR-6748-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6772-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6793-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6829-5p 0 1 0
chr12:53299800|53300193 hsa-miR-6732-5p 1 0 0
chr12:53299800|53300193 hsa-miR-3190-3p 0 1 0
chr12:53299800|53300193 hsa-miR-6827-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6798-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6760-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6782-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6821-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6850-5p 1 0 0
chr12:53299800|53300193 hsa-miR-1343-3p 1 1 0
chr12:53299800|53300193 hsa-miR-4793-5p 1 1 0
chr12:53299800|53300193 hsa-miR-3944-3p 1 0 0
chr12:53299800|53300193 hsa-miR-1229-5p 1 0 0
chr12:53299800|53300193 hsa-miR-4640-5p 1 0 0
chr12:53299800|53300193 hsa-miR-3127-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6771-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6823-5p 1 0 0
chr12:53299800|53300193 hsa-miR-92b-5p 1 1 0
chr12:53299800|53300193 hsa-miR-3202 0 1 0
chr12:53299800|53300193 hsa-miR-3648 1 0 0
chr12:53299800|53300193 hsa-miR-4787-5p 1 0 0
chr12:53299800|53300193 hsa-miR-149-3p 1 0 0
chr12:53299800|53300193 hsa-miR-202-3p 1 0 0
chr12:53299800|53300193 hsa-miR-6824-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6789-5p 1 0 0
chr12:53299800|53300193 hsa-miR-3162-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6781-5p 1 0 0
chr12:53299800|53300193 hsa-let-7e-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6499-5p 0 1 0
chr12:53299800|53300193 hsa-miR-3158-3p 1 0 0
chr12:53299800|53300193 hsa-miR-4746-3p 1 1 0
chr12:53299800|53300193 hsa-miR-4750-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6792-5p 1 0 0
chr12:53299800|53300193 hsa-miR-518c-5p 0 1 0
chr12:53299800|53300193 hsa-miR-7158-5p 0 1 0
chr12:53299800|53300193 hsa-miR-3678-5p 0 1 0
chr12:53299800|53300193 hsa-miR-10400-5p 1 0 0
chr12:53299800|53300193 hsa-miR-1207-5p 1 1 0
chr12:53299800|53300193 hsa-miR-3689b-3p 0 1 0
chr12:53299800|53300193 hsa-miR-4763-3p 1 1 0
chr12:53299800|53300193 hsa-miR-6769b-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6787-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6816-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6870-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6893-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6775-5p 1 0 0
chr12:53299800|53300193 hsa-miR-3180 1 1 0
chr12:53299800|53300193 hsa-miR-5001-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6737-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6743-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6752-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6754-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6756-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6769a-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6803-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6813-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6842-5p 1 0 0
chr12:53299800|53300193 hsa-miR-10401-5p 1 0 0
chr12:53299800|53300193 hsa-miR-1249-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6722-3p 1 0 0
chr12:53299800|53300193 hsa-miR-6751-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6774-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6779-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6797-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6808-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6879-5p 1 0 0
chr12:53299800|53300193 hsa-miR-7111-5p 1 0 0
chr12:53299800|53300193 hsa-miR-3620-5p 0 1 0
chr12:53299800|53300193 hsa-miR-4728-5p 1 0 0
chr12:53299800|53300193 hsa-miR-5196-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6780b-5p 1 0 0
chr12:53299800|53300193 hsa-miR-10396a-5p 1 0 0
chr12:53299800|53300193 hsa-miR-10396b-5p 1 0 0
chr12:53299800|53300193 hsa-miR-1237-5p 1 1 0
chr12:53299800|53300193 hsa-miR-1909-3p 1 0 0
chr12:53299800|53300193 hsa-miR-328-5p 1 1 0
chr12:53299800|53300193 hsa-miR-449c-5p 1 1 0
chr12:53299800|53300193 hsa-miR-4725-3p 1 0 0
chr12:53299800|53300193 hsa-miR-6729-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6738-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6777-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6846-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6848-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6883-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6889-5p 1 0 0
chr12:53299800|53300193 hsa-miR-4436b-3p 1 0 0
chr12:53299800|53300193 hsa-miR-4697-5p 0 1 0
chr12:53299800|53300193 hsa-miR-6885-5p 1 0 0
chr12:53299800|53300193 hsa-miR-939-5p 1 0 0
chr12:53299800|53300193 hsa-miR-4758-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6511a-5p 1 0 0
chr12:53299800|53300193 hsa-miR-3085-5p 1 1 0
chr12:53299800|53300193 hsa-miR-3940-5p 1 0 0
chr12:53299800|53300193 hsa-miR-1914-3p 1 0 0
chr12:53299800|53300193 hsa-miR-4747-5p 1 1 0
chr12:53299800|53300193 hsa-miR-6876-5p 0 1 0
chr12:53299800|53300193 hsa-miR-6891-5p 1 0 0
chr12:53299800|53300193 hsa-miR-378a-3p 1 1 0
chr12:53299800|53300193 hsa-miR-6785-5p 1 0 0
chr12:53299800|53300193 hsa-miR-6790-5p 1 0 0
chr12:53299800|53300193 hsa-miR-10400-3p 1 0 0
chr12:53299800|53300193 hsa-miR-4756-5p 1 0 0
chr12:53299800|53300193 hsa-miR-33b-3p 1 1 0
chr12:53299800|53300193 hsa-miR-6764-5p 0 1 0
chr12:53299800|53300193 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:53299800|53300193
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MKSSINPLPGDTRQPLHPCVPRRMQRLCGPGIPKNSL
Nucleotide Sequence CTGAAGTCCAGCATTAATCCCCTACCCGGCGACACCCGGCAGCCCCTTCACCCCTGTGTACCTCGCAGGATGCAGAGATTGTGCGGACCCGGGATCCCGAAAAACTCGCTT
CircID chr12:53299800|53300193
ORF Type ORF2
Protein Length 76
Nucleotide Length 231
Protein Sequence MLGPESVPPPKRSRSKLMAPPRIGTHNGTFHCDEALACALLRLLPEYRVRSAKSDPGTACMHASGVDGIPPTGSLR
Nucleotide Sequence ATGCTCGGTCCAGAGTCCGTCCCGCCCCCAAAACGATCCCGCAGCAAACTCATGGCACCGCCCCGAATCGGGACGCACAATGGCACCTTCCACTGCGACGAGGCACTGGCATGCGCACTGCTTCGCCTCCTGCCGGAGTACCGGGTACGGTCCGCGAAAAGTGACCCTGGGACTGCGTGCATGCATGCCTCCGGGGTGGATGGCATTCCGCCAACAGGGTCACTCCGATAG
CircID chr12:53299800|53300193
ORF Type ORF3
Protein Length 69
Nucleotide Length 210
Protein Sequence MAPSTATRHWHAHCFASCRSTGYGPRKVTLGLRACMPPGWMAFRQQGHSDSARQPKHPSYPSCLPEVQH
Nucleotide Sequence ATGGCACCTTCCACTGCGACGAGGCACTGGCATGCGCACTGCTTCGCCTCCTGCCGGAGTACCGGGTACGGTCCGCGAAAAGTGACCCTGGGACTGCGTGCATGCATGCCTCCGGGGTGGATGGCATTCCGCCAACAGGGTCACTCCGATAGCGCCCGGCAGCCCAAGCACCCTTCCTACCCTTCCTGCCTCCCTGAAGTCCAGCATTAA
CircID chr12:53299800|53300193
ORF Type ORF4
Protein Length 65
Nucleotide Length 195
Protein Sequence MHARSPRVTFRGPYPVLRQEAKQCACQCLVAVEGAIVRPDSGRCHEFAAGSFWGRDGLWTEHAVP
Nucleotide Sequence ATGCATGCACGCAGTCCCAGGGTCACTTTTCGCGGACCGTACCCGGTACTCCGGCAGGAGGCGAAGCAGTGCGCATGCCAGTGCCTCGTCGCAGTGGAAGGTGCCATTGTGCGTCCCGATTCGGGGCGGTGCCATGAGTTTGCTGCGGGATCGTTTTGGGGGCGGGACGGACTCTGGACCGAGCATGCGGTGCCG
CircID chr12:53299800|53300193
ORF Type ORF5
Protein Length 72
Nucleotide Length 216
Protein Sequence MPSTPEACMHAVPGSLFADRTRYSGRRRSSAHASASSQWKVPLCVPIRGGAMSLLRDRFGGGTDSGPSMRCR
Nucleotide Sequence ATGCCATCCACCCCGGAGGCATGCATGCACGCAGTCCCAGGGTCACTTTTCGCGGACCGTACCCGGTACTCCGGCAGGAGGCGAAGCAGTGCGCATGCCAGTGCCTCGTCGCAGTGGAAGGTGCCATTGTGCGTCCCGATTCGGGGCGGTGCCATGAGTTTGCTGCGGGATCGTTTTGGGGGCGGGACGGACTCTGGACCGAGCATGCGGTGCCGG
CircID chr12:53299800|53300193
ORF Type ORF6
Protein Length 78
Nucleotide Length 237
Protein Sequence MLDFREAGRVGRVLGLPGAIGVTLLAECHPPRRHACTQSQGHFSRTVPGTPAGGEAVRMPVPRRSGRCHCASRFGAVP
Nucleotide Sequence ATGCTGGACTTCAGGGAGGCAGGAAGGGTAGGAAGGGTGCTTGGGCTGCCGGGCGCTATCGGAGTGACCCTGTTGGCGGAATGCCATCCACCCCGGAGGCATGCATGCACGCAGTCCCAGGGTCACTTTTCGCGGACCGTACCCGGTACTCCGGCAGGAGGCGAAGCAGTGCGCATGCCAGTGCCTCGTCGCAGTGGAAGGTGCCATTGTGCGTCCCGATTCGGGGCGGTGCCATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab