CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53314751|53315127
Strand -
CircType exon
Host Gene ENSG00000094914.11;
Algorism CIRI2;
Sequence CTGCTGGCATTATACACACGGACTGAGTCATCTAGCAGGGCCACTGCAAACTTGTTGGTGTGGGGGTGCCATGCAAAGACACGCAAGCAGCAGCTGGACCTAAGGAAGGGGTTAACATGAAGAGTTCCTGCACCTATCCCTACCCTAGCCCAGAAGCTCACATTCATTTCCAGTAAGGACATGGTTTTTTCCTACTTTTTCTTGTATTCTTTTTTGGGGGAACAGGAGGAATGAGAATATGGTGAGCAATCAGAAAAGGAGTAGGAGTCTTTGCCTTCTCCCCAAAGGGAGTTTTGAGGTTCAGGACTTCCTTTCCACAAAGCTCCAGGGCTTGTGCACTCACCAATTTGTGACTTGGGCAAATTCAGCGATCAGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53314751|53315127 hsa-miR-183-5p 0 0 1
chr12:53314751|53315127 hsa-miR-183-3p 0 0 1
chr12:53314751|53315127 hsa-miR-187-5p 0 0 1
chr12:53314751|53315127 hsa-miR-187-3p 0 0 1
chr12:53314751|53315127 hsa-miR-204-5p 0 0 1
chr12:53314751|53315127 hsa-miR-204-3p 0 0 1
chr12:53314751|53315127 hsa-miR-211-5p 0 0 1
chr12:53314751|53315127 hsa-miR-211-3p 0 0 1
chr12:53314751|53315127 hsa-miR-224-5p 0 0 1
chr12:53314751|53315127 hsa-miR-224-3p 0 0 1
chr12:53314751|53315127 hsa-miR-186-5p 0 0 1
chr12:53314751|53315127 hsa-miR-186-3p 0 0 1
chr12:53314751|53315127 hsa-miR-381-5p 0 0 1
chr12:53314751|53315127 hsa-miR-381-3p 0 0 1
chr12:53314751|53315127 hsa-miR-328-5p 0 0 1
chr12:53314751|53315127 hsa-miR-328-3p 0 0 1
chr12:53314751|53315127 hsa-miR-511-5p 0 0 1
chr12:53314751|53315127 hsa-miR-511-3p 0 0 1
chr12:53314751|53315127 hsa-miR-568 0 0 1
chr12:53314751|53315127 hsa-miR-612 1 0 1
chr12:53314751|53315127 hsa-miR-1323 0 0 1
chr12:53314751|53315127 hsa-miR-300 0 0 1
chr12:53314751|53315127 hsa-miR-873-5p 0 0 1
chr12:53314751|53315127 hsa-miR-873-3p 0 0 1
chr12:53314751|53315127 hsa-miR-939-5p 0 0 1
chr12:53314751|53315127 hsa-miR-939-3p 0 0 1
chr12:53314751|53315127 hsa-miR-1178-5p 0 0 1
chr12:53314751|53315127 hsa-miR-1178-3p 0 0 1
chr12:53314751|53315127 hsa-miR-1202 0 0 1
chr12:53314751|53315127 hsa-miR-663b 0 1 1
chr12:53314751|53315127 hsa-miR-1286 0 0 1
chr12:53314751|53315127 hsa-miR-1291 0 1 1
chr12:53314751|53315127 hsa-miR-1243 0 0 1
chr12:53314751|53315127 hsa-miR-548n 0 0 1
chr12:53314751|53315127 hsa-miR-548o-3p 0 0 1
chr12:53314751|53315127 hsa-miR-548o 0 0 1
chr12:53314751|53315127 hsa-miR-361-3p 0 0 1
chr12:53314751|53315127 hsa-miR-875-3p 0 0 1
chr12:53314751|53315127 hsa-miR-455-3p 0 0 1
chr12:53314751|53315127 hsa-miR-548d-3p 0 0 1
chr12:53314751|53315127 hsa-miR-1285 0 0 1
chr12:53314751|53315127 hsa-miR-365 0 0 1
chr12:53314751|53315127 hsa-miR-762 1 0 0
chr12:53314751|53315127 hsa-miR-548u 0 1 0
chr12:53314751|53315127 hsa-miR-3175 0 1 0
chr12:53314751|53315127 hsa-miR-4308 0 1 0
chr12:53314751|53315127 hsa-miR-4321 1 0 0
chr12:53314751|53315127 hsa-miR-4254 0 1 0
chr12:53314751|53315127 hsa-miR-4466 1 0 0
chr12:53314751|53315127 hsa-miR-4498 1 0 0
chr12:53314751|53315127 hsa-miR-1587 1 0 0
chr12:53314751|53315127 hsa-miR-4656 1 0 0
chr12:53314751|53315127 hsa-miR-4658 0 1 0
chr12:53314751|53315127 hsa-miR-5093 0 1 0
chr12:53314751|53315127 hsa-miR-5693 0 1 0
chr12:53314751|53315127 hsa-miR-5787 1 0 0
chr12:53314751|53315127 hsa-miR-6860 1 0 0
chr12:53314751|53315127 hsa-miR-8066 0 1 0
chr12:53314751|53315127 hsa-miR-3150a-3p 0 1 0
chr12:53314751|53315127 hsa-miR-6757-5p 1 0 0
chr12:53314751|53315127 hsa-miR-6880-5p 1 0 0
chr12:53314751|53315127 hsa-let-7c-3p 0 1 0
chr12:53314751|53315127 hsa-miR-491-5p 1 0 0
chr12:53314751|53315127 hsa-miR-6793-5p 0 1 0
chr12:53314751|53315127 hsa-miR-6770-5p 0 1 0
chr12:53314751|53315127 hsa-miR-2467-3p 1 0 0
chr12:53314751|53315127 hsa-miR-7855-5p 0 1 0
chr12:53314751|53315127 hsa-miR-532-3p 0 1 0
chr12:53314751|53315127 hsa-miR-6852-5p 0 1 0
chr12:53314751|53315127 hsa-miR-7109-5p 1 0 0
chr12:53314751|53315127 hsa-miR-1229-5p 1 0 0
chr12:53314751|53315127 hsa-miR-30c-2-3p 1 0 0
chr12:53314751|53315127 hsa-miR-296-3p 1 0 0
chr12:53314751|53315127 hsa-miR-6878-5p 0 1 0
chr12:53314751|53315127 hsa-miR-208a-5p 0 1 0
chr12:53314751|53315127 hsa-miR-6814-5p 1 0 0
chr12:53314751|53315127 hsa-miR-6758-3p 0 1 0
chr12:53314751|53315127 hsa-miR-3192-3p 0 1 0
chr12:53314751|53315127 hsa-miR-3173-5p 0 1 0
chr12:53314751|53315127 hsa-miR-6515-3p 0 1 0
chr12:53314751|53315127 hsa-miR-3680-3p 0 1 0
chr12:53314751|53315127 hsa-miR-4716-5p 0 1 0
chr12:53314751|53315127 hsa-miR-4763-3p 1 0 0
chr12:53314751|53315127 hsa-miR-6816-5p 1 0 0
chr12:53314751|53315127 hsa-miR-6743-5p 1 0 0
chr12:53314751|53315127 hsa-miR-6756-5p 1 0 0
chr12:53314751|53315127 hsa-miR-6722-3p 1 0 0
chr12:53314751|53315127 hsa-miR-6879-5p 1 0 0
chr12:53314751|53315127 hsa-miR-3127-3p 1 1 0
chr12:53314751|53315127 hsa-miR-3620-5p 1 1 0
chr12:53314751|53315127 hsa-miR-5189-5p 1 0 0
chr12:53314751|53315127 hsa-miR-1909-3p 1 0 0
chr12:53314751|53315127 hsa-miR-4649-5p 1 0 0
chr12:53314751|53315127 hsa-miR-675-5p 1 0 0
chr12:53314751|53315127 hsa-miR-6799-3p 0 1 0
chr12:53314751|53315127 hsa-miR-4747-5p 0 1 0
chr12:53314751|53315127 hsa-miR-6511a-3p 0 1 0
chr12:53314751|53315127 hsa-miR-6756-3p 0 1 0
chr12:53314751|53315127 hsa-miR-6511b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:53314751|53315127
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence LLALYTRTESSSRATANLLVWGCHAKTRKQQLDLRKGLT
Nucleotide Sequence CTGCTGGCATTATACACACGGACTGAGTCATCTAGCAGGGCCACTGCAAACTTGTTGGTGTGGGGGTGCCATGCAAAGACACGCAAGCAGCAGCTGGACCTAAGGAAGGGGTTAACATGA
CircID chr12:53314751|53315127
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MSHLAGPLQTCWCGGAMQRHASSSWT
Nucleotide Sequence CTGAGTCATCTAGCAGGGCCACTGCAAACTTGTTGGTGTGGGGGTGCCATGCAAAGACACGCAAGCAGCAGCTGGACCTAA
CircID chr12:53314751|53315127
ORF Type ORF3
Protein Length 46
Nucleotide Length 138
Protein Sequence MVSNQKRSRSLCLLPKGSFEVQDFLSTKLQGLCTHQFVTWANSAIR
Nucleotide Sequence ATGGTGAGCAATCAGAAAAGGAGTAGGAGTCTTTGCCTTCTCCCCAAAGGGAGTTTTGAGGTTCAGGACTTCCTTTCCACAAAGCTCCAGGGCTTGTGCACTCACCAATTTGTGACTTGGGCAAATTCAGCGATCAGA
CircID chr12:53314751|53315127
ORF Type ORF4
Protein Length 58
Nucleotide Length 177
Protein Sequence MNLPKSQIGECTSPGALWKGSPEPQNSLWGEGKDSYSFSDCSPYSHSSCSPKKEYKKK
Nucleotide Sequence CTGAATTTGCCCAAGTCACAAATTGGTGAGTGCACAAGCCCTGGAGCTTTGTGGAAAGGAAGTCCTGAACCTCAAAACTCCCTTTGGGGAGAAGGCAAAGACTCCTACTCCTTTTCTGATTGCTCACCATATTCTCATTCCTCCTGTTCCCCCAAAAAAGAATACAAGAAAAAGTAG
CircID chr12:53314751|53315127
ORF Type ORF5
Protein Length 60
Nucleotide Length 180
Protein Sequence MSLLEMNVSFWARVGIGAGTLHVNPFLRSSCCLRVFAWHPHTNKFAVALLDDSVRVYNAS
Nucleotide Sequence ATGTCCTTACTGGAAATGAATGTGAGCTTCTGGGCTAGGGTAGGGATAGGTGCAGGAACTCTTCATGTTAACCCCTTCCTTAGGTCCAGCTGCTGCTTGCGTGTCTTTGCATGGCACCCCCACACCAACAAGTTTGCAGTGGCCCTGCTAGATGACTCAGTCCGTGTGTATAATGCCAGC
CircID chr12:53314751|53315127
ORF Type ORF6
Protein Length 60
Nucleotide Length 183
Protein Sequence MVSAQALELCGKEVLNLKTPFGEKAKTPTPFLIAHHILIPPVPPKKNTRKSRKKPCPYWK
Nucleotide Sequence TTGGTGAGTGCACAAGCCCTGGAGCTTTGTGGAAAGGAAGTCCTGAACCTCAAAACTCCCTTTGGGGAGAAGGCAAAGACTCCTACTCCTTTTCTGATTGCTCACCATATTCTCATTCCTCCTGTTCCCCCAAAAAAGAATACAAGAAAAAGTAGGAAAAAACCATGTCCTTACTGGAAATGA
CircID chr12:53314751|53315127
ORF Type ORF7
Protein Length 28
Nucleotide Length 87
Protein Sequence MLTPSLGPAAACVSLHGTPTPTSLQWPC
Nucleotide Sequence ATGTTAACCCCTTCCTTAGGTCCAGCTGCTGCTTGCGTGTCTTTGCATGGCACCCCCACACCAACAAGTTTGCAGTGGCCCTGCTAG
CircID chr12:53314751|53315127
ORF Type ORF8
Protein Length 34
Nucleotide Length 105
Protein Sequence MLTIFSFLLFPQKRIQEKVGKNHVLTGNECELLG
Nucleotide Sequence TTGCTCACCATATTCTCATTCCTCCTGTTCCCCCAAAAAAGAATACAAGAAAAAGTAGGAAAAAACCATGTCCTTACTGGAAATGAATGTGAGCTTCTGGGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab