CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53474953|53475153
Strand -
CircType exon
Host Gene ENSG00000197111.14;
Algorism CIRI2;
Sequence CCCTTCTTCTTCTTCCTCCTCCACCACCACCCCCTCGCTCGCCACAGCGGGGACCTCCGACGCACCCTCCAGCCTCCCCAACCCTCTTCCGACCGCCCCTTGTGTCTCCAGTCTGCTTGGCATGAAACCCATCCCTCTCCTGGCTCTAAATGTTGTGTCTGCTGCTAAGGGTACCGGGGCTTCAGCTACCACCACCACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53474953|53475153 hsa-miR-15a-5p 0 0 1
chr12:53474953|53475153 hsa-miR-15a-3p 0 0 1
chr12:53474953|53475153 hsa-miR-15b-5p 0 0 1
chr12:53474953|53475153 hsa-miR-15b-3p 0 0 1
chr12:53474953|53475153 hsa-miR-195-5p 0 0 1
chr12:53474953|53475153 hsa-miR-195-3p 0 0 1
chr12:53474953|53475153 hsa-miR-424-5p 0 0 1
chr12:53474953|53475153 hsa-miR-424-3p 0 0 1
chr12:53474953|53475153 hsa-miR-497-5p 0 0 1
chr12:53474953|53475153 hsa-miR-497-3p 0 0 1
chr12:53474953|53475153 hsa-miR-503-5p 0 0 1
chr12:53474953|53475153 hsa-miR-503-3p 0 0 1
chr12:53474953|53475153 hsa-miR-608 -24 1 1
chr12:53474953|53475153 hsa-miR-629-5p 0 0 1
chr12:53474953|53475153 hsa-miR-629-3p 0 0 1
chr12:53474953|53475153 hsa-miR-646 -7 0 1
chr12:53474953|53475153 hsa-miR-765 -22 1 1
chr12:53474953|53475153 hsa-miR-665 -10 0 1
chr12:53474953|53475153 hsa-miR-922 -7 0 1
chr12:53474953|53475153 hsa-miR-939-5p 0 0 1
chr12:53474953|53475153 hsa-miR-939-3p 0 0 1
chr12:53474953|53475153 hsa-miR-1293 -21 1 1
chr12:53474953|53475153 hsa-miR-1303 -11 0 1
chr12:53474953|53475153 hsa-miR-296-3p -28 1 1
chr12:53474953|53475153 hsa-miR-485-5p -16 0 1
chr12:53474953|53475153 hsa-miR-876-3p -10 0 1
chr12:53474953|53475153 hsa-miR-323-5p 0 0 1
chr12:53474953|53475153 hsa-miR-16 0 0 1
chr12:53474953|53475153 hsa-miR-3147 -28 1 0
chr12:53474953|53475153 hsa-miR-3652 -20 1 0
chr12:53474953|53475153 hsa-miR-1268b -32 1 0
chr12:53474953|53475153 hsa-miR-4430 -17 1 0
chr12:53474953|53475153 hsa-miR-3135b -14 1 0
chr12:53474953|53475153 hsa-miR-3150a-3p -18 1 0
chr12:53474953|53475153 hsa-miR-6825-5p -24 1 0
chr12:53474953|53475153 hsa-miR-6804-5p -15 1 0
chr12:53474953|53475153 hsa-miR-6515-5p -18 1 0
chr12:53474953|53475153 hsa-miR-6757-5p -21 1 0
chr12:53474953|53475153 hsa-miR-6880-5p -24 1 0
chr12:53474953|53475153 hsa-miR-7847-3p -29 1 0
chr12:53474953|53475153 hsa-miR-6732-5p -23 1 0
chr12:53474953|53475153 hsa-miR-6805-5p -23 1 0
chr12:53474953|53475153 hsa-miR-7843-3p -3 1 0
chr12:53474953|53475153 hsa-miR-214-3p -16 1 0
chr12:53474953|53475153 hsa-miR-6767-5p -12 1 0
chr12:53474953|53475153 hsa-miR-4771 -10 1 0
chr12:53474953|53475153 hsa-miR-4639-5p -16 1 0
chr12:53474953|53475153 hsa-miR-16-5p -9 1 0
chr12:53474953|53475153 hsa-miR-6812-5p -19 1 0
chr12:53474953|53475153 hsa-miR-5001-5p -22 1 0
chr12:53474953|53475153 hsa-miR-6752-5p -26 1 0
chr12:53474953|53475153 hsa-miR-6842-5p -19 1 0
chr12:53474953|53475153 hsa-miR-7110-5p -29 1 0
chr12:53474953|53475153 hsa-miR-11181-3p -22 1 0
chr12:53474953|53475153 hsa-miR-1249-5p -20 1 0
chr12:53474953|53475153 hsa-miR-6763-5p -22 1 0
chr12:53474953|53475153 hsa-miR-7111-5p -24 1 0
chr12:53474953|53475153 hsa-miR-328-5p -30 1 0
chr12:53474953|53475153 hsa-miR-10396a-3p -12 1 0
chr12:53474953|53475153 hsa-miR-10396b-3p -12 1 0
chr12:53474953|53475153 hsa-miR-4716-3p -17 1 0
chr12:53474953|53475153 hsa-miR-6884-5p -22 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:53474953|53475153
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MLGMKPIPLLALNVVSAAKGTGASATTTT
Nucleotide Sequence CTGCTTGGCATGAAACCCATCCCTCTCCTGGCTCTAAATGTTGTGTCTGCTGCTAAGGGTACCGGGGCTTCAGCTACCACCACCACC
CircID chr12:53474953|53475153
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MGFMPSRLETQGAVGRGLGRLEGASEVPAVASEGVVVEEEEEEG
Nucleotide Sequence ATGGGTTTCATGCCAAGCAGACTGGAGACACAAGGGGCGGTCGGAAGAGGGTTGGGGAGGCTGGAGGGTGCGTCGGAGGTCCCCGCTGTGGCGAGCGAGGGGGTGGTGGTGGAGGAGGAAGAAGAAGAAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab