CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53503125|53503359
Strand -
CircType exon
Host Gene ENSG00000139546.9;
Algorism CIRI2;
Sequence AGCAGGTGAGGGAGGAACCGAGGCATCCCAGAAGCCCTTCAAGGAACCCAGGCCCTGCACCACCCACTCTGCCCCGAGGCCTGGCCAGGTGACACTTAGCCACCCTGACCTGGCCTCTTCCTGAGAGTCCCTCTGGACCTGAACAGGGTTTTCCAGGGCTTCTGCTGCTATGAAGAATTCTTGGGGTGGAGGGGTTGGTTAGCCCCATAGAGGGGTTGTGGCAGTAGGTTGGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53503125|53503359 hsa-miR-15a-5p 0 0 1
chr12:53503125|53503359 hsa-miR-15a-3p 0 0 1
chr12:53503125|53503359 hsa-miR-198 0 1 1
chr12:53503125|53503359 hsa-miR-10a-5p 0 0 1
chr12:53503125|53503359 hsa-miR-10a-3p 0 0 1
chr12:53503125|53503359 hsa-miR-10b-5p 0 0 1
chr12:53503125|53503359 hsa-miR-10b-3p 0 0 1
chr12:53503125|53503359 hsa-miR-15b-5p 0 0 1
chr12:53503125|53503359 hsa-miR-15b-3p 0 0 1
chr12:53503125|53503359 hsa-miR-195-5p 0 0 1
chr12:53503125|53503359 hsa-miR-195-3p 0 0 1
chr12:53503125|53503359 hsa-miR-424-5p 0 0 1
chr12:53503125|53503359 hsa-miR-424-3p 0 0 1
chr12:53503125|53503359 hsa-miR-376b-5p 0 0 1
chr12:53503125|53503359 hsa-miR-376b-3p 0 0 1
chr12:53503125|53503359 hsa-miR-497-5p 0 0 1
chr12:53503125|53503359 hsa-miR-497-3p 0 0 1
chr12:53503125|53503359 hsa-miR-503-5p 0 0 1
chr12:53503125|53503359 hsa-miR-503-3p 0 0 1
chr12:53503125|53503359 hsa-miR-595 0 0 1
chr12:53503125|53503359 hsa-miR-597-5p 0 0 1
chr12:53503125|53503359 hsa-miR-597-3p 0 0 1
chr12:53503125|53503359 hsa-miR-646 0 0 1
chr12:53503125|53503359 hsa-miR-661 1 1 1
chr12:53503125|53503359 hsa-miR-298 0 1 1
chr12:53503125|53503359 hsa-miR-873-5p 0 0 1
chr12:53503125|53503359 hsa-miR-873-3p 0 0 1
chr12:53503125|53503359 hsa-miR-922 0 0 1
chr12:53503125|53503359 hsa-miR-1293 0 1 1
chr12:53503125|53503359 hsa-miR-1266-5p 0 0 1
chr12:53503125|53503359 hsa-miR-1266-3p 0 0 1
chr12:53503125|53503359 hsa-miR-486-3p 0 0 1
chr12:53503125|53503359 hsa-miR-525-5p 0 1 1
chr12:53503125|53503359 hsa-miR-502-5p 0 0 1
chr12:53503125|53503359 hsa-miR-875-3p 0 1 1
chr12:53503125|53503359 hsa-miR-520a-5p 0 1 1
chr12:53503125|53503359 hsa-miR-1274b 0 0 1
chr12:53503125|53503359 hsa-miR-16 0 0 1
chr12:53503125|53503359 hsa-miR-376a 0 0 1
chr12:53503125|53503359 hsa-miR-608 1 0 0
chr12:53503125|53503359 hsa-miR-663a 1 0 0
chr12:53503125|53503359 hsa-miR-762 1 0 0
chr12:53503125|53503359 hsa-miR-3141 1 0 0
chr12:53503125|53503359 hsa-miR-3196 1 0 0
chr12:53503125|53503359 hsa-miR-4326 0 1 0
chr12:53503125|53503359 hsa-miR-4281 1 0 0
chr12:53503125|53503359 hsa-miR-3714 1 0 0
chr12:53503125|53503359 hsa-miR-4463 1 0 0
chr12:53503125|53503359 hsa-miR-4466 1 0 0
chr12:53503125|53503359 hsa-miR-4481 0 1 0
chr12:53503125|53503359 hsa-miR-4507 1 0 0
chr12:53503125|53503359 hsa-miR-4651 1 0 0
chr12:53503125|53503359 hsa-miR-4656 1 0 0
chr12:53503125|53503359 hsa-miR-4688 1 0 0
chr12:53503125|53503359 hsa-miR-5090 1 1 0
chr12:53503125|53503359 hsa-miR-6070 0 1 0
chr12:53503125|53503359 hsa-miR-6085 1 0 0
chr12:53503125|53503359 hsa-miR-6132 1 1 0
chr12:53503125|53503359 hsa-miR-6745 1 0 0
chr12:53503125|53503359 hsa-miR-6860 1 0 0
chr12:53503125|53503359 hsa-miR-9900 0 1 0
chr12:53503125|53503359 hsa-miR-11399 0 1 0
chr12:53503125|53503359 hsa-miR-150-3p 1 0 0
chr12:53503125|53503359 hsa-miR-4435 0 1 0
chr12:53503125|53503359 hsa-miR-4433b-3p 1 0 0
chr12:53503125|53503359 hsa-miR-6749-3p 0 1 0
chr12:53503125|53503359 hsa-miR-671-5p 1 1 0
chr12:53503125|53503359 hsa-miR-6861-5p 1 0 0
chr12:53503125|53503359 hsa-miR-7106-5p 1 0 0
chr12:53503125|53503359 hsa-miR-1972 0 1 0
chr12:53503125|53503359 hsa-miR-6799-5p 1 0 0
chr12:53503125|53503359 hsa-miR-7851-3p 1 0 0
chr12:53503125|53503359 hsa-miR-6089 1 1 0
chr12:53503125|53503359 hsa-miR-1225-3p 1 0 0
chr12:53503125|53503359 hsa-miR-6727-5p 1 1 0
chr12:53503125|53503359 hsa-miR-6759-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6721-5p 1 0 0
chr12:53503125|53503359 hsa-miR-23b-5p 1 1 0
chr12:53503125|53503359 hsa-miR-197-5p 1 1 0
chr12:53503125|53503359 hsa-miR-874-3p 1 0 0
chr12:53503125|53503359 hsa-miR-3151-5p 1 0 0
chr12:53503125|53503359 hsa-miR-3180-3p 1 0 0
chr12:53503125|53503359 hsa-miR-6748-5p 1 1 0
chr12:53503125|53503359 hsa-miR-6793-5p 1 0 0
chr12:53503125|53503359 hsa-miR-185-3p 1 0 0
chr12:53503125|53503359 hsa-miR-23a-5p 1 1 0
chr12:53503125|53503359 hsa-miR-6765-3p 0 1 0
chr12:53503125|53503359 hsa-miR-6735-3p 1 0 0
chr12:53503125|53503359 hsa-miR-6882-3p 1 0 0
chr12:53503125|53503359 hsa-miR-1229-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6749-5p 1 1 0
chr12:53503125|53503359 hsa-miR-6887-3p 0 1 0
chr12:53503125|53503359 hsa-miR-6793-3p 1 1 0
chr12:53503125|53503359 hsa-miR-6513-3p 0 1 0
chr12:53503125|53503359 hsa-miR-4749-3p 1 0 0
chr12:53503125|53503359 hsa-miR-6802-3p 1 0 0
chr12:53503125|53503359 hsa-miR-1207-5p 1 0 0
chr12:53503125|53503359 hsa-miR-1233-5p 1 0 0
chr12:53503125|53503359 hsa-miR-4763-3p 1 1 0
chr12:53503125|53503359 hsa-miR-6769b-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6816-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6775-5p 1 1 0
chr12:53503125|53503359 hsa-miR-6743-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6756-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6803-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6813-5p 1 0 0
chr12:53503125|53503359 hsa-miR-7107-5p 1 0 0
chr12:53503125|53503359 hsa-miR-11181-3p 1 1 0
chr12:53503125|53503359 hsa-miR-6808-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6875-5p 0 1 0
chr12:53503125|53503359 hsa-miR-6836-5p 0 1 0
chr12:53503125|53503359 hsa-miR-1237-5p 1 0 0
chr12:53503125|53503359 hsa-miR-4632-5p 0 1 0
chr12:53503125|53503359 hsa-miR-4685-5p 1 0 0
chr12:53503125|53503359 hsa-miR-4745-5p 0 1 0
chr12:53503125|53503359 hsa-miR-6735-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6848-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6831-5p 1 0 0
chr12:53503125|53503359 hsa-miR-4758-5p 1 0 0
chr12:53503125|53503359 hsa-miR-365a-5p 0 1 0
chr12:53503125|53503359 hsa-miR-365b-5p 0 1 0
chr12:53503125|53503359 hsa-miR-3940-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6785-5p 1 0 0
chr12:53503125|53503359 hsa-miR-6756-3p 1 0 0
chr12:53503125|53503359 hsa-miR-7114-3p 1 0 0
chr12:53503125|53503359 hsa-miR-6838-5p 0 1 0
chr12:53503125|53503359 hsa-miR-6806-3p 0 1 0
chr12:53503125|53503359 hsa-miR-6506-5p 0 1 0
chr12:53503125|53503359 hsa-miR-4524a-5p 0 1 0
chr12:53503125|53503359 hsa-miR-4524b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:53503125|53503359
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MRVPLDLNRVFQGFCCYEEFLGWRGWLAP
Nucleotide Sequence CTGAGAGTCCCTCTGGACCTGAACAGGGTTTTCCAGGGCTTCTGCTGCTATGAAGAATTCTTGGGGTGGAGGGGTTGGTTAGCCCCATAG
CircID chr12:53503125|53503359
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MGLTNPSTPRILHSSRSPGKPCSGPEGLSGRGQVRVAKCHLARPRGRVGGAGPGFLEGLLGCLGSSLTC
Nucleotide Sequence ATGGGGCTAACCAACCCCTCCACCCCAAGAATTCTTCATAGCAGCAGAAGCCCTGGAAAACCCTGTTCAGGTCCAGAGGGACTCTCAGGAAGAGGCCAGGTCAGGGTGGCTAAGTGTCACCTGGCCAGGCCTCGGGGCAGAGTGGGTGGTGCAGGGCCTGGGTTCCTTGAAGGGCTTCTGGGATGCCTCGGTTCCTCCCTCACCTGC
CircID chr12:53503125|53503359
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MENPVQVQRDSQEEARSGWLSVTWPGLGAEWVVQGLGSLKGFWDASVPPSPA
Nucleotide Sequence CTGGAAAACCCTGTTCAGGTCCAGAGGGACTCTCAGGAAGAGGCCAGGTCAGGGTGGCTAAGTGTCACCTGGCCAGGCCTCGGGGCAGAGTGGGTGGTGCAGGGCCTGGGTTCCTTGAAGGGCTTCTGGGATGCCTCGGTTCCTCCCTCACCTGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab