CircRNA Information

General Information
circRNA Basic Information
CircID chr12:53669148|53669273
Strand -
CircType exon
Host Gene ENSG00000135390.16;
Algorism CIRI2;
Sequence CTGGCATAACCAATGATGAGGCTCCCAAACACAGTTCCAATCCCAGCCCCAGAACCAGCCACCCCAACTGTGGCAGCCCCAGCTCCAATGAACTTGGCTGCTGTGTCGATGTCCCTTGAAATGGCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:53669148|53669273 hsa-miR-498-5p 0 0 1
chr12:53669148|53669273 hsa-miR-498-3p 0 0 1
chr12:53669148|53669273 hsa-miR-608 1 0 1
chr12:53669148|53669273 hsa-miR-637 1 0 1
chr12:53669148|53669273 hsa-miR-892a 0 0 1
chr12:53669148|53669273 hsa-miR-920 0 0 1
chr12:53669148|53669273 hsa-miR-342-5p 0 0 1
chr12:53669148|53669273 hsa-miR-762 1 1 0
chr12:53669148|53669273 hsa-miR-760 1 0 0
chr12:53669148|53669273 hsa-miR-1293 1 0 0
chr12:53669148|53669273 hsa-miR-3137 1 0 0
chr12:53669148|53669273 hsa-miR-3196 1 0 0
chr12:53669148|53669273 hsa-miR-4259 1 0 0
chr12:53669148|53669273 hsa-miR-4498 1 1 0
chr12:53669148|53669273 hsa-miR-4505 1 1 0
chr12:53669148|53669273 hsa-miR-4507 1 0 0
chr12:53669148|53669273 hsa-miR-4508 1 0 0
chr12:53669148|53669273 hsa-miR-1587 1 0 0
chr12:53669148|53669273 hsa-miR-4648 1 0 0
chr12:53669148|53669273 hsa-miR-4651 1 1 0
chr12:53669148|53669273 hsa-miR-4656 1 0 0
chr12:53669148|53669273 hsa-miR-4736 1 0 0
chr12:53669148|53669273 hsa-miR-4741 1 0 0
chr12:53669148|53669273 hsa-miR-5572 1 1 0
chr12:53669148|53669273 hsa-miR-5705 1 0 0
chr12:53669148|53669273 hsa-miR-5787 1 0 0
chr12:53669148|53669273 hsa-miR-6085 1 0 0
chr12:53669148|53669273 hsa-miR-6086 1 0 0
chr12:53669148|53669273 hsa-miR-6745 1 0 0
chr12:53669148|53669273 hsa-miR-8089 1 0 0
chr12:53669148|53669273 hsa-miR-12115 1 0 0
chr12:53669148|53669273 hsa-miR-4731-5p 0 1 0
chr12:53669148|53669273 hsa-miR-6747-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6857-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6728-5p 1 0 0
chr12:53669148|53669273 hsa-miR-4474-3p 1 1 0
chr12:53669148|53669273 hsa-miR-6842-3p 1 1 0
chr12:53669148|53669273 hsa-miR-8069 1 0 0
chr12:53669148|53669273 hsa-miR-6748-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6793-5p 1 0 0
chr12:53669148|53669273 hsa-miR-185-3p 1 1 0
chr12:53669148|53669273 hsa-miR-6829-5p 0 1 0
chr12:53669148|53669273 hsa-miR-6827-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6782-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6874-5p 0 1 0
chr12:53669148|53669273 hsa-miR-296-3p 1 0 0
chr12:53669148|53669273 hsa-miR-887-5p 1 1 0
chr12:53669148|53669273 hsa-miR-6853-3p 0 1 0
chr12:53669148|53669273 hsa-miR-1207-5p 1 0 0
chr12:53669148|53669273 hsa-miR-4763-3p 1 0 0
chr12:53669148|53669273 hsa-miR-6769b-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6812-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6816-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6775-5p 1 0 0
chr12:53669148|53669273 hsa-miR-5001-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6726-5p 1 1 0
chr12:53669148|53669273 hsa-miR-6737-5p 1 1 0
chr12:53669148|53669273 hsa-miR-6756-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6803-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6813-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6819-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6842-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6751-5p 1 0 0
chr12:53669148|53669273 hsa-miR-3620-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6846-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6848-5p 1 1 0
chr12:53669148|53669273 hsa-miR-3940-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6855-5p 1 0 0
chr12:53669148|53669273 hsa-miR-4700-5p 1 0 0
chr12:53669148|53669273 hsa-miR-4646-5p 1 0 0
chr12:53669148|53669273 hsa-miR-6506-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr12:53669148|53669273
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MMRLPNTVPIPAPEPATPTVAAPAPMNLAAVSMSLEMA
Nucleotide Sequence ATGATGAGGCTCCCAAACACAGTTCCAATCCCAGCCCCAGAACCAGCCACCCCAACTGTGGCAGCCCCAGCTCCAATGAACTTGGCTGCTGTGTCGATGTCCCTTGAAATGGCG
CircID chr12:53669148|53669273
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MELGLPQLGWLVLGLGLELCLGASSLVMP
Nucleotide Sequence TTGGAGCTGGGGCTGCCACAGTTGGGGTGGCTGGTTCTGGGGCTGGGATTGGAACTGTGTTTGGGAGCCTCATCATTGGTTATGCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab