CircRNA Information

General Information
circRNA Basic Information
CircID chr12:54347767|54348039
Strand +
CircType exon
Host Gene ENSG00000111481.8;
Algorism CIRI2;
Sequence CCGGTGTACCACCTGCTGGGGATCACTCTCTAGGATCACCCTGCAAAAACAAAGAAGAGATCATTGTTCACTCTGTCCCGAAGGCCCAACTCACTGTCGGGGAACAGGACCTCTGGCCACTGAGCCTGCTTGACTTAGGACAGGGGCAGTTATCCCGCCACCTCACCCAAGATCAAGGCAGGTCAGAGAACTTACCCTCCATCTACAATTTCATCCACAGCCAAGAACAGCCCCTCCATGTTCTCCAGCAGTGCTCGCTTTTCTACATTTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr12:54347767|54348039 hsa-miR-214-5p 0 0 1
chr12:54347767|54348039 hsa-miR-214-3p 0 0 1
chr12:54347767|54348039 hsa-miR-224-5p 0 0 1
chr12:54347767|54348039 hsa-miR-224-3p 0 0 1
chr12:54347767|54348039 hsa-miR-484 0 1 1
chr12:54347767|54348039 hsa-miR-507 0 0 1
chr12:54347767|54348039 hsa-miR-555 0 0 1
chr12:54347767|54348039 hsa-miR-557 0 0 1
chr12:54347767|54348039 hsa-miR-571 0 1 1
chr12:54347767|54348039 hsa-miR-631 0 0 1
chr12:54347767|54348039 hsa-miR-635 0 0 1
chr12:54347767|54348039 hsa-miR-647 0 0 1
chr12:54347767|54348039 hsa-miR-1236-5p 0 0 1
chr12:54347767|54348039 hsa-miR-1236-3p 0 0 1
chr12:54347767|54348039 hsa-miR-1287-5p 0 0 1
chr12:54347767|54348039 hsa-miR-1287-3p 0 0 1
chr12:54347767|54348039 hsa-miR-1294 0 1 1
chr12:54347767|54348039 hsa-miR-1255a 0 0 1
chr12:54347767|54348039 hsa-miR-1262 1 1 1
chr12:54347767|54348039 hsa-miR-129-5p 0 0 1
chr12:54347767|54348039 hsa-miR-339-5p 0 1 1
chr12:54347767|54348039 hsa-miR-423-5p 0 0 1
chr12:54347767|54348039 hsa-miR-324-3p 0 0 1
chr12:54347767|54348039 hsa-miR-450b-5p 0 0 1
chr12:54347767|54348039 hsa-miR-1255b 0 0 1
chr12:54347767|54348039 hsa-miR-24 0 0 1
chr12:54347767|54348039 hsa-miR-219-1-3p 0 0 1
chr12:54347767|54348039 hsa-miR-663 0 0 1
chr12:54347767|54348039 hsa-miR-1245 0 0 1
chr12:54347767|54348039 hsa-miR-608 1 1 0
chr12:54347767|54348039 hsa-miR-762 1 0 0
chr12:54347767|54348039 hsa-miR-1182 1 0 0
chr12:54347767|54348039 hsa-miR-1183 1 0 0
chr12:54347767|54348039 hsa-miR-1293 0 1 0
chr12:54347767|54348039 hsa-miR-1257 1 0 0
chr12:54347767|54348039 hsa-miR-1270 1 0 0
chr12:54347767|54348039 hsa-miR-3122 0 1 0
chr12:54347767|54348039 hsa-miR-3138 1 0 0
chr12:54347767|54348039 hsa-miR-3147 1 1 0
chr12:54347767|54348039 hsa-miR-3155a 0 1 0
chr12:54347767|54348039 hsa-miR-3165 1 0 0
chr12:54347767|54348039 hsa-miR-4256 0 1 0
chr12:54347767|54348039 hsa-miR-4259 1 1 0
chr12:54347767|54348039 hsa-miR-3911 1 0 0
chr12:54347767|54348039 hsa-miR-4447 1 0 0
chr12:54347767|54348039 hsa-miR-3135b 0 1 0
chr12:54347767|54348039 hsa-miR-4462 1 0 0
chr12:54347767|54348039 hsa-miR-4507 1 0 0
chr12:54347767|54348039 hsa-miR-4508 1 0 0
chr12:54347767|54348039 hsa-miR-4534 0 1 0
chr12:54347767|54348039 hsa-miR-4656 1 0 0
chr12:54347767|54348039 hsa-miR-4675 1 1 0
chr12:54347767|54348039 hsa-miR-4741 1 0 0
chr12:54347767|54348039 hsa-miR-4752 1 0 0
chr12:54347767|54348039 hsa-miR-5090 1 0 0
chr12:54347767|54348039 hsa-miR-5194 1 0 0
chr12:54347767|54348039 hsa-miR-5787 1 0 0
chr12:54347767|54348039 hsa-miR-6134 0 1 0
chr12:54347767|54348039 hsa-miR-7974 1 0 0
chr12:54347767|54348039 hsa-miR-8056 1 0 0
chr12:54347767|54348039 hsa-miR-8082 0 1 0
chr12:54347767|54348039 hsa-miR-8089 1 0 0
chr12:54347767|54348039 hsa-miR-1843 0 1 0
chr12:54347767|54348039 hsa-miR-11400 1 0 0
chr12:54347767|54348039 hsa-miR-4435 0 1 0
chr12:54347767|54348039 hsa-miR-6747-3p 0 1 0
chr12:54347767|54348039 hsa-miR-4687-3p 1 0 0
chr12:54347767|54348039 hsa-miR-3692-5p 0 1 0
chr12:54347767|54348039 hsa-miR-6833-5p 1 0 0
chr12:54347767|54348039 hsa-miR-7114-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6089 1 0 0
chr12:54347767|54348039 hsa-miR-7847-3p 1 0 0
chr12:54347767|54348039 hsa-miR-6744-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6746-5p 1 0 0
chr12:54347767|54348039 hsa-miR-3677-5p 1 1 0
chr12:54347767|54348039 hsa-miR-24-3p 0 1 0
chr12:54347767|54348039 hsa-miR-6842-3p 1 0 0
chr12:54347767|54348039 hsa-miR-6748-5p 1 0 0
chr12:54347767|54348039 hsa-miR-185-3p 0 1 0
chr12:54347767|54348039 hsa-miR-6829-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6732-5p 1 0 0
chr12:54347767|54348039 hsa-miR-4693-3p 0 1 0
chr12:54347767|54348039 hsa-miR-1229-5p 1 0 0
chr12:54347767|54348039 hsa-miR-3691-5p 1 1 0
chr12:54347767|54348039 hsa-miR-5001-3p 1 0 0
chr12:54347767|54348039 hsa-miR-4690-5p 0 1 0
chr12:54347767|54348039 hsa-miR-1266-3p 0 1 0
chr12:54347767|54348039 hsa-miR-193a-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6781-5p 1 0 0
chr12:54347767|54348039 hsa-miR-3681-5p 1 0 0
chr12:54347767|54348039 hsa-miR-676-3p 0 1 0
chr12:54347767|54348039 hsa-miR-6769b-5p 1 0 0
chr12:54347767|54348039 hsa-miR-5001-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6743-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6756-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6813-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6815-5p 0 1 0
chr12:54347767|54348039 hsa-miR-1249-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6751-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6774-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6779-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6797-5p 1 0 0
chr12:54347767|54348039 hsa-miR-328-5p 1 0 0
chr12:54347767|54348039 hsa-miR-4701-3p 1 1 0
chr12:54347767|54348039 hsa-miR-4726-5p 1 0 0
chr12:54347767|54348039 hsa-miR-4745-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6795-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6846-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6848-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6887-5p 1 0 0
chr12:54347767|54348039 hsa-miR-939-5p 1 0 0
chr12:54347767|54348039 hsa-miR-4758-5p 1 0 0
chr12:54347767|54348039 hsa-miR-5586-3p 0 1 0
chr12:54347767|54348039 hsa-miR-6736-5p 0 1 0
chr12:54347767|54348039 hsa-miR-6891-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6785-5p 1 0 0
chr12:54347767|54348039 hsa-miR-6718-5p 0 1 0
chr12:54347767|54348039 hsa-miR-6504-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr12:54347767|54348039
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MQKQRRDHCSLCPEGPTHCRGTGPLATEPA
Nucleotide Sequence CTGCAAAAACAAAGAAGAGATCATTGTTCACTCTGTCCCGAAGGCCCAACTCACTGTCGGGGAACAGGACCTCTGGCCACTGAGCCTGCTTGA
CircID chr12:54347767|54348039
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MSLLDLGQGQLSRHLTQDQGRSENLPSIYNFIHSQEQPLHVLQQCSLFYIF
Nucleotide Sequence CTGAGCCTGCTTGACTTAGGACAGGGGCAGTTATCCCGCCACCTCACCCAAGATCAAGGCAGGTCAGAGAACTTACCCTCCATCTACAATTTCATCCACAGCCAAGAACAGCCCCTCCATGTTCTCCAGCAGTGCTCGCTTTTCTACATTTTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab